BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00022774
         (933 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305137.1| predicted protein [Populus trichocarpa] gi|2...   302   e-106
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...   301   e-106
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia...   301   e-106
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   300   e-106
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   300   e-106

>ref|XP_002305137.1| predicted protein [Populus trichocarpa] gi|222848101|gb|EEE85648.1|
           predicted protein [Populus trichocarpa]
          Length = 421

 Score =  302 bits (773), Expect(2) = e-106
 Identities = 142/164 (86%), Positives = 152/164 (92%)
 Frame = +3

Query: 237 RGFETMYNGHTGRRLKAMIFLGPTYYQRLKHMVDDKIHSRGRGPMQNLTRQPVEGRARDG 416
           RGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGP+Q LTRQP EGR+RDG
Sbjct: 257 RGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 316

Query: 417 GLRVGEMEHDCIVAHGAANFLKERLFDQSDAYRVHVCERCGLIAIANLKKTSYECRGCKN 596
           GLR GEME DC++AHGAA+FLKERLFDQSDAYRVHVCERCGLIAIANLKK S+ECRGCKN
Sbjct: 317 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 376

Query: 597 KTDIVQVHIPYACKLLFQELMSMAIAPRMFTKAVKKASKDQNKG 728
           KTDIVQVHIPYACKLLFQELM+MAIAPRM TK +K+A   + KG
Sbjct: 377 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKKG 420



 Score =  111 bits (277), Expect(2) = e-106
 Identities = 50/55 (90%), Positives = 54/55 (98%)
 Frame = +2

Query: 2   SRMTVGQLIECLMGKVAAHMGKEGDATPFTDVTLDNISRALHKCGYQKRGFETMY 166
           SRMT+GQLIEC+MGKVAAHMGKEGDATPFTDVT+DNIS+ALHKCGYQ RGFETMY
Sbjct: 209 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 263


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  301 bits (772), Expect(2) = e-106
 Identities = 146/165 (88%), Positives = 153/165 (92%)
 Frame = +3

Query: 237  RGFETMYNGHTGRRLKAMIFLGPTYYQRLKHMVDDKIHSRGRGPMQNLTRQPVEGRARDG 416
            RGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGP+Q LTRQP EGR+RDG
Sbjct: 1027 RGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1086

Query: 417  GLRVGEMEHDCIVAHGAANFLKERLFDQSDAYRVHVCERCGLIAIANLKKTSYECRGCKN 596
            GLR GEME DC++AHGAA+FLKERLFDQSDAYRVHVCERCGLIAIANLKK S+ECRGCKN
Sbjct: 1087 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 1146

Query: 597  KTDIVQVHIPYACKLLFQELMSMAIAPRMFTKAVKKASKDQNKGG 731
            KTDIVQVHIPYACKLLFQELM+MAIAPRM TK VK A KDQ K G
Sbjct: 1147 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLA-KDQKKKG 1190



 Score =  111 bits (277), Expect(2) = e-106
 Identities = 50/55 (90%), Positives = 54/55 (98%)
 Frame = +2

Query: 2    SRMTVGQLIECLMGKVAAHMGKEGDATPFTDVTLDNISRALHKCGYQKRGFETMY 166
            SRMT+GQLIEC+MGKVAAHMGKEGDATPFTDVT+DNIS+ALHKCGYQ RGFETMY
Sbjct: 979  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1033


>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score =  301 bits (771), Expect(2) = e-106
 Identities = 143/164 (87%), Positives = 152/164 (92%)
 Frame = +3

Query: 237  RGFETMYNGHTGRRLKAMIFLGPTYYQRLKHMVDDKIHSRGRGPMQNLTRQPVEGRARDG 416
            RGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGP+Q LTRQP EGR+RDG
Sbjct: 1031 RGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1090

Query: 417  GLRVGEMEHDCIVAHGAANFLKERLFDQSDAYRVHVCERCGLIAIANLKKTSYECRGCKN 596
            GLR GEME DC++AHGAA+FLKERLFDQSDAYRVHVCERCGLIAIANLKK S+ECRGCKN
Sbjct: 1091 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 1150

Query: 597  KTDIVQVHIPYACKLLFQELMSMAIAPRMFTKAVKKASKDQNKG 728
            KTDIVQVHIPYACKLLFQELM+MAIAPRM TK VK+A   + KG
Sbjct: 1151 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQARDQKKKG 1194



 Score =  111 bits (277), Expect(2) = e-106
 Identities = 50/55 (90%), Positives = 54/55 (98%)
 Frame = +2

Query: 2    SRMTVGQLIECLMGKVAAHMGKEGDATPFTDVTLDNISRALHKCGYQKRGFETMY 166
            SRMT+GQLIEC+MGKVAAHMGKEGDATPFTDVT+DNIS+ALHKCGYQ RGFETMY
Sbjct: 983  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1037


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  300 bits (769), Expect(2) = e-106
 Identities = 145/165 (87%), Positives = 153/165 (92%)
 Frame = +3

Query: 237  RGFETMYNGHTGRRLKAMIFLGPTYYQRLKHMVDDKIHSRGRGPMQNLTRQPVEGRARDG 416
            RGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGP+Q LTRQP EGR+RDG
Sbjct: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089

Query: 417  GLRVGEMEHDCIVAHGAANFLKERLFDQSDAYRVHVCERCGLIAIANLKKTSYECRGCKN 596
            GLR GEME DC++AHGAA+FLKERLFDQSDAYRVHVCERCGLIAIANLKK S+ECRGCKN
Sbjct: 1090 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 1149

Query: 597  KTDIVQVHIPYACKLLFQELMSMAIAPRMFTKAVKKASKDQNKGG 731
            KTDIVQVHIPYACKLLFQELM+MAIAPRM TK V K +KDQ K G
Sbjct: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDV-KPTKDQKKKG 1193



 Score =  111 bits (277), Expect(2) = e-106
 Identities = 50/55 (90%), Positives = 54/55 (98%)
 Frame = +2

Query: 2    SRMTVGQLIECLMGKVAAHMGKEGDATPFTDVTLDNISRALHKCGYQKRGFETMY 166
            SRMT+GQLIEC+MGKVAAHMGKEGDATPFTDVT+DNIS+ALHKCGYQ RGFETMY
Sbjct: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  300 bits (768), Expect(2) = e-106
 Identities = 145/165 (87%), Positives = 152/165 (92%)
 Frame = +3

Query: 237  RGFETMYNGHTGRRLKAMIFLGPTYYQRLKHMVDDKIHSRGRGPMQNLTRQPVEGRARDG 416
            RGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGRGP+Q LTRQP EGR+RDG
Sbjct: 1029 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1088

Query: 417  GLRVGEMEHDCIVAHGAANFLKERLFDQSDAYRVHVCERCGLIAIANLKKTSYECRGCKN 596
            GLR GEME DC++AHGAA+FLKERLFDQSDAYRVHVCERCGLIAIANLKK S+ECRGCKN
Sbjct: 1089 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 1148

Query: 597  KTDIVQVHIPYACKLLFQELMSMAIAPRMFTKAVKKASKDQNKGG 731
            KTDIVQVHIPYACKLLFQELM+MAIAPRM TK V K  KDQ K G
Sbjct: 1149 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEV-KPPKDQKKKG 1192



 Score =  111 bits (277), Expect(2) = e-106
 Identities = 50/55 (90%), Positives = 54/55 (98%)
 Frame = +2

Query: 2    SRMTVGQLIECLMGKVAAHMGKEGDATPFTDVTLDNISRALHKCGYQKRGFETMY 166
            SRMT+GQLIEC+MGKVAAHMGKEGDATPFTDVT+DNIS+ALHKCGYQ RGFETMY
Sbjct: 981  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1035