BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00022387
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   159   3e-37
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   128   4e-28
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        123   2e-26
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc...   120   2e-25
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   118   6e-25

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  159 bits (401), Expect = 3e-37
 Identities = 69/94 (73%), Positives = 84/94 (89%)
 Frame = -1

Query: 284 QRRMTKLWHMRLGHMSERGMQIIAKDNHLGGHEVKDLGFCKHCIFGKLHRSKFPKATHRT 105
           Q+ MTKLWH+RLGHM ERGMQI++K++ L GH+VK L FC+HC+FGKLHR+KFPKA HRT
Sbjct: 407 QKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRT 466

Query: 104 KGTLDYIYSDYWGPSRVDSLGGHRYFLSLIDDYS 3
           KGTLDYI+SD WGP RV+SLGG R+F+S+IDDYS
Sbjct: 467 KGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYS 500


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  128 bits (322), Expect = 4e-28
 Identities = 57/90 (63%), Positives = 69/90 (76%)
 Frame = -1

Query: 272 TKLWHMRLGHMSERGMQIIAKDNHLGGHEVKDLGFCKHCIFGKLHRSKFPKATHRTKGTL 93
           TKLWH RLGH+S RG+Q + K   LG +++ DL FC+HC+FGK  R KF KA H T+  L
Sbjct: 391 TKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQL 450

Query: 92  DYIYSDYWGPSRVDSLGGHRYFLSLIDDYS 3
           DYI+SD WGPSRV S+GG RYFL+LIDDYS
Sbjct: 451 DYIHSDLWGPSRVPSIGGARYFLTLIDDYS 480


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  123 bits (308), Expect = 2e-26
 Identities = 54/90 (60%), Positives = 69/90 (76%)
 Frame = -1

Query: 272 TKLWHMRLGHMSERGMQIIAKDNHLGGHEVKDLGFCKHCIFGKLHRSKFPKATHRTKGTL 93
           TKLWH+RLGHMS +G+Q ++K   LGG  ++ L FC++CIFGK HRSKF K  H +K  L
Sbjct: 423 TKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQVL 482

Query: 92  DYIYSDYWGPSRVDSLGGHRYFLSLIDDYS 3
           DY + D+WGP++V SL G RYF+SLIDDYS
Sbjct: 483 DYAHIDHWGPAQVPSLSGGRYFMSLIDDYS 512


>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1131

 Score =  120 bits (300), Expect = 2e-25
 Identities = 54/90 (60%), Positives = 66/90 (73%)
 Frame = -1

Query: 272 TKLWHMRLGHMSERGMQIIAKDNHLGGHEVKDLGFCKHCIFGKLHRSKFPKATHRTKGTL 93
           T LWHMRLGHMSE GM  + K N L G+   ++ FC+HC+FGK  R KF  + HRTKG L
Sbjct: 376 TNLWHMRLGHMSELGMAELMKRNLLDGYTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGIL 435

Query: 92  DYIYSDYWGPSRVDSLGGHRYFLSLIDDYS 3
           DY+++D WGPSR  SLGG RY L++IDDYS
Sbjct: 436 DYVHADLWGPSRKPSLGGARYMLTIIDDYS 465


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa Japonica Group]
           gi|108710286|gb|ABF98081.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1322

 Score =  118 bits (295), Expect = 6e-25
 Identities = 54/90 (60%), Positives = 65/90 (72%)
 Frame = -1

Query: 272 TKLWHMRLGHMSERGMQIIAKDNHLGGHEVKDLGFCKHCIFGKLHRSKFPKATHRTKGTL 93
           T LWHMRLGHMSE GM  + K N L G    ++ FC+HC+FGK  R KF  + HRTKG L
Sbjct: 426 TNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGIL 485

Query: 92  DYIYSDYWGPSRVDSLGGHRYFLSLIDDYS 3
           DY+++D WGPSR  SLGG RY L++IDDYS
Sbjct: 486 DYVHADLWGPSRKPSLGGARYMLTIIDDYS 515