BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00021823
         (1589 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ13715.1| putative replication factor A [Capsicum chinense]     341   4e-91
emb|CBI17841.3| unnamed protein product [Vitis vinifera]              308   3e-81
ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subu...   305   3e-80
ref|XP_004146319.1| PREDICTED: replication protein A 32 kDa subu...   286   1e-74
ref|NP_566188.1| replication factor A2 [Arabidopsis thaliana] gi...   248   3e-63

>emb|CAJ13715.1| putative replication factor A [Capsicum chinense]
          Length = 299

 Score =  341 bits (874), Expect = 4e-91
 Identities = 166/283 (58%), Positives = 211/283 (74%)
 Frame = +3

Query: 87  MYGGNRDFDGNAAFSGGGFMPSMATQSADPXXXXXXXXKNRETQPMVPLTVKQISGALQA 266
           MYGGN  FDGNAAFSGGGFMPS ATQ+A          KNR++Q ++PLTVKQIS A Q+
Sbjct: 20  MYGGNNQFDGNAAFSGGGFMPSQATQTASDHSFSPT--KNRDSQTLIPLTVKQISEAFQS 77

Query: 267 GDDKVNFLIDGVDVNNVKLVGLMYKKEERVTDISFTLDDGTGRIDCFRWVNEHVDTKEME 446
            DDK NFLIDGVDVNNVKLVG+++ K E +T +SF +DDGTGR+DCFRWVNE VDTKEME
Sbjct: 78  SDDKTNFLIDGVDVNNVKLVGILFNKAEMLTAVSFVVDDGTGRLDCFRWVNEAVDTKEME 137

Query: 447 AVSDGMYVRVHXXXXXXXXXXXXMVFSVRPLTDFNEITNHFADAIYVHIYNTKLRRLQDA 626
           A+++G+YVRVH            M +SVRP+ D+NEI +HFA+ IYVH YN++LR+ QD+
Sbjct: 138 ALTNGIYVRVHGHLKGFQGKKQLMAYSVRPVDDYNEIASHFAEVIYVHSYNSRLRKQQDS 197

Query: 627 ASVPAHFPNSAVNTPSKGYQAPSGNHFPGQYNKGGLLAIAEMISEFLSTPACVASERGVH 806
           + + A  P+S+ NTP KGYQA + N FPG +N  G+  + +M+ ++L  P+C+A E+GVH
Sbjct: 198 SFMSAQVPSSSFNTPLKGYQASASNQFPG-FNMDGIGGVHKMVLDYLQQPSCLALEKGVH 256

Query: 807 LNECVQKLGVPMEKIKEAMEYLESEGLVYTTINEHHYKSAANA 935
            NE  Q+L VP EKI  AME LESEGLVY+TI++ HYKS  NA
Sbjct: 257 RNELAQQLRVPSEKIMGAMEALESEGLVYSTIDDFHYKSTGNA 299


>emb|CBI17841.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score =  308 bits (788), Expect = 3e-81
 Identities = 155/275 (56%), Positives = 193/275 (70%)
 Frame = +3

Query: 108 FDGNAAFSGGGFMPSMATQSADPXXXXXXXXKNRETQPMVPLTVKQISGALQAGDDKVNF 287
           FDGNAAFSGGGFMPS ATQ+A+P        +NR+TQ ++PLTVKQIS A  + DDK NF
Sbjct: 7   FDGNAAFSGGGFMPSQATQAAEPGFSPA---RNRDTQALLPLTVKQISEAFLSSDDKSNF 63

Query: 288 LIDGVDVNNVKLVGLMYKKEERVTDISFTLDDGTGRIDCFRWVNEHVDTKEMEAVSDGMY 467
           LIDGV+VNNV LVG+++ K ERVTD+ F LDDGTGRIDC RWVNE VDTKEME + DGMY
Sbjct: 64  LIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMY 123

Query: 468 VRVHXXXXXXXXXXXXMVFSVRPLTDFNEITNHFADAIYVHIYNTKLRRLQDAASVPAHF 647
           VRVH             VFS+RP+TDFNEI +HF + IYVHIYNTK  R+Q      +H 
Sbjct: 124 VRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTK-SRVQAGGPTQSHV 182

Query: 648 PNSAVNTPSKGYQAPSGNHFPGQYNKGGLLAIAEMISEFLSTPACVASERGVHLNECVQK 827
            N A+ TP KGYQA   N F GQY   GL  + +++ ++L  P  +A ++GV  +E  Q+
Sbjct: 183 TNPAIGTPLKGYQASQPNQFSGQYG-AGLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQ 241

Query: 828 LGVPMEKIKEAMEYLESEGLVYTTINEHHYKSAAN 932
           L VP++KI E++  LE EGL+Y+TI+E HYKS  N
Sbjct: 242 LNVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGN 276


>ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subunit [Vitis vinifera]
          Length = 275

 Score =  305 bits (780), Expect = 3e-80
 Identities = 154/275 (56%), Positives = 191/275 (69%)
 Frame = +3

Query: 108 FDGNAAFSGGGFMPSMATQSADPXXXXXXXXKNRETQPMVPLTVKQISGALQAGDDKVNF 287
           FDGNAAFSGGGFMPS ATQ+A+P        +NR+TQ ++PLTVKQIS A  + DDK NF
Sbjct: 7   FDGNAAFSGGGFMPSQATQAAEPGFSPA---RNRDTQALLPLTVKQISEAFLSSDDKSNF 63

Query: 288 LIDGVDVNNVKLVGLMYKKEERVTDISFTLDDGTGRIDCFRWVNEHVDTKEMEAVSDGMY 467
           LIDGV+VNNV LVG+++ K ERVTD+ F LDDGTGRIDC RWVNE VDTKEME + DGMY
Sbjct: 64  LIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMY 123

Query: 468 VRVHXXXXXXXXXXXXMVFSVRPLTDFNEITNHFADAIYVHIYNTKLRRLQDAASVPAHF 647
           VRVH             VFS+RP+TDFNEI +HF + IYVHIYNTK R         +H 
Sbjct: 124 VRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRA---GGPTQSHV 180

Query: 648 PNSAVNTPSKGYQAPSGNHFPGQYNKGGLLAIAEMISEFLSTPACVASERGVHLNECVQK 827
            N A+ TP KGYQA   N F GQY   GL  + +++ ++L  P  +A ++GV  +E  Q+
Sbjct: 181 TNPAIGTPLKGYQASQPNQFSGQYG-AGLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQ 239

Query: 828 LGVPMEKIKEAMEYLESEGLVYTTINEHHYKSAAN 932
           L VP++KI E++  LE EGL+Y+TI+E HYKS  N
Sbjct: 240 LNVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGN 274


>ref|XP_004146319.1| PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis
           sativus] gi|449500253|ref|XP_004161048.1| PREDICTED:
           replication protein A 32 kDa subunit B-like [Cucumis
           sativus]
          Length = 277

 Score =  286 bits (732), Expect = 1e-74
 Identities = 142/275 (51%), Positives = 186/275 (67%)
 Frame = +3

Query: 108 FDGNAAFSGGGFMPSMATQSADPXXXXXXXXKNRETQPMVPLTVKQISGALQAGDDKVNF 287
           FDGNAAFSGGGFMPS  TQ+ D         KNR+ Q ++PLTVKQI+ A  + DDK NF
Sbjct: 6   FDGNAAFSGGGFMPSQTTQAPD---HSFSPAKNRDVQALLPLTVKQINDAFLSSDDKSNF 62

Query: 288 LIDGVDVNNVKLVGLMYKKEERVTDISFTLDDGTGRIDCFRWVNEHVDTKEMEAVSDGMY 467
           +IDGVDVNNVKLVG++  +  R+TD++F LDDGTGRIDC +WVNE  D+ E+E + DGMY
Sbjct: 63  VIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGMY 122

Query: 468 VRVHXXXXXXXXXXXXMVFSVRPLTDFNEITNHFADAIYVHIYNTKLRRLQDAASVPAHF 647
           VRVH             VFS+RP+TD+NEITNHF ++IYVH YNT+LR+ Q ++      
Sbjct: 123 VRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQPQ 182

Query: 648 PNSAVNTPSKGYQAPSGNHFPGQYNKGGLLAIAEMISEFLSTPACVASERGVHLNECVQK 827
             +  NTP K YQAP  N + GQ       ++ +M+ +FL  P+C  SERG H +   Q+
Sbjct: 183 MTNLSNTPMKVYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSC-DSERGAHRDVIAQQ 241

Query: 828 LGVPMEKIKEAMEYLESEGLVYTTINEHHYKSAAN 932
           L VP+EK+  AM+ LE EGL+Y+T ++ H+KS AN
Sbjct: 242 LKVPLEKLIPAMKNLEEEGLIYSTTDDFHFKSTAN 276


>ref|NP_566188.1| replication factor A2 [Arabidopsis thaliana]
           gi|75330048|sp|Q8LFJ8.1|RFA2B_ARATH RecName:
           Full=Replication protein A 32 kDa subunit B;
           Short=AtRPA32B; Short=RP-A p32 B; AltName: Full=DNA
           replication protein A2 subunit B; AltName:
           Full=Replication factor A protein 2 B; Short=AtRPA2 B;
           Short=RF-A protein 2 B; AltName: Full=Replicon protein
           A2 B gi|21537031|gb|AAM61372.1| putative replication
           factor A [Arabidopsis thaliana]
           gi|26450657|dbj|BAC42439.1| putative replication factor
           A [Arabidopsis thaliana] gi|90186248|gb|ABD91500.1|
           At3g02920 [Arabidopsis thaliana]
           gi|332640358|gb|AEE73879.1| replication factor A2
           [Arabidopsis thaliana]
          Length = 278

 Score =  248 bits (633), Expect = 3e-63
 Identities = 129/286 (45%), Positives = 180/286 (62%), Gaps = 3/286 (1%)
 Frame = +3

Query: 87  MYGGNRDFDGNAAFSGGGFMPSMATQSADPXXXXXXXXKNRETQPMVPLTVKQISGALQA 266
           MYGG  DFDGNAAF+GGGFMPS AT  A          KNR+ + ++PLT+KQ+S A   
Sbjct: 1   MYGG--DFDGNAAFAGGGFMPSQATTQAHESSSSL---KNRDVRTLLPLTLKQLSSASTT 55

Query: 267 GDDKVNFLIDGVDVNNVKLVGLMYKKEERVTDISFTLDDGTGRIDCFRWVNEHVDTKEME 446
           G+   NF IDGVD+  V +VG + + E R+T + F +DDGTG +DC RW +   +T+EME
Sbjct: 56  GES--NFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEME 113

Query: 447 AVSDGMYVRVHXXXXXXXXXXXXMVFSVRPLTDFNEITNHFADAIYVHIYNTKLRR---L 617
           AV  GMYVR+H             VFSVRP+TDFNEI +HF + +YVH+YNTKLR     
Sbjct: 114 AVKLGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSIT 173

Query: 618 QDAASVPAHFPNSAVNTPSKGYQAPSGNHFPGQYNKGGLLAIAEMISEFLSTPACVASER 797
           QD A+     P S + TP+K YQ    N FP Q+N   +  + + +  +L+ P  + SE 
Sbjct: 174 QDTATPRPQMPYSTMPTPAKPYQTGPSNQFPNQFN-DSMHGVKQTVLNYLNQPMHIVSEA 232

Query: 798 GVHLNECVQKLGVPMEKIKEAMEYLESEGLVYTTINEHHYKSAANA 935
           GVH +   ++L +P+ ++KEA+E L ++G +Y+T++E  +KS ANA
Sbjct: 233 GVHCDIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTANA 278