BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00021711
         (785 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   121   8e-33
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   106   1e-32
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...   118   6e-32
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   113   1e-31
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...   109   2e-31

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  121 bits (304), Expect(2) = 8e-33
 Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
 Frame = -3

Query: 660 GFIKGRVIQDNLLLAQELIHPLDHSTHGGNVLLKLDMSKAFDMLSWKFLSLIMTKFGFSA 481
           GFI+GR I+D + LA E I+ LD  + GGN+  K+D+SKAFD L+WKFL  ++ +FGFS 
Sbjct: 227 GFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSE 286

Query: 480 EWIDRILACISNSWFSVLLNGELAGFFPSSKGIRQGDPISPGLFALASDYLIRGLCAIMK 301
            + + I A + ++  S+ +NG   G+F  S+G+RQGDP+SP LF LA D L R L  +++
Sbjct: 287 TFCNWIDAILQSAKLSICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVE 346

Query: 300 DSPACAYKTKCKMIIPC-LAFADDCLIF 220
                  +     ++P  + +ADD +IF
Sbjct: 347 QGKLKQMRGTRNCLVPSHILYADDIMIF 374



 Score = 45.4 bits (106), Expect(2) = 8e-33
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = -2

Query: 784 LIPKCEGALTWKQFRPISLCTFANKIISKLLSTRLSKVLPFWIHQRE 644
           LIPK + A +  QFRPI++  F  KIISK+L+ RL++++P  + Q +
Sbjct: 179 LIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQ 225


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  106 bits (265), Expect(3) = 1e-32
 Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
 Frame = -3

Query: 663 SGFIKGRVIQDNLLLAQELIHPLDH--STHGGNVLLKLDMSKAFDMLSWKFLSLIMTKFG 490
           S F+  R+I DN L+A E+ H +    +   G   LKLDMSKA+D + W FL  +M K G
Sbjct: 541 SAFVPRRLITDNALVAFEIFHAMKRKDANKNGVCALKLDMSKAYDRVEWCFLERVMKKMG 600

Query: 489 FSAEWIDRILACISNSWFSVLLNGELAGFFPSSKGIRQGDPISPGLFALASDYLIRGLC- 313
           F   WIDR++ACIS+  F+  +NG + G    S+G+RQGDPISP LF L +D     L  
Sbjct: 601 FCDGWIDRVMACISSVSFTFNVNGVVEGSLSPSRGLRQGDPISPYLFLLCADAFSTLLSK 660

Query: 312 AIMKDSPACAYKTKCKMIIPCLAFADDCLIF 220
           A  +     A   +   ++  L FADD ++F
Sbjct: 661 AASEKKIHGAQICRGAPVVSHLFFADDSILF 691



 Score = 50.4 bits (119), Expect(3) = 1e-32
 Identities = 25/48 (52%), Positives = 31/48 (64%)
 Frame = -2

Query: 784 LIPKCEGALTWKQFRPISLCTFANKIISKLLSTRLSKVLPFWIHQRES 641
           LIPKC+   + K FRPISLCT   KI+SK L+ RL  +LP  I   +S
Sbjct: 494 LIPKCDHPQSMKDFRPISLCTVLYKILSKTLANRLKVILPAIISPNQS 541



 Score = 29.6 bits (65), Expect(3) = 1e-32
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 211 SKASLSKATV---FLEHYQAMSGQVINKDKSACIFSSKLSKSRQK*VILYSGFKQ 56
           +KAS+ + ++    +  Y+  SGQ +N  K+  +FS  + + R+  ++   G K+
Sbjct: 692 TKASVQECSMVADIISKYERASGQQVNLSKTEVVFSRSVDRERRSAIVNVLGVKE 746


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score =  118 bits (295), Expect(3) = 6e-32
 Identities = 71/165 (43%), Positives = 94/165 (56%), Gaps = 9/165 (5%)
 Frame = -3

Query: 657  FIKGRVIQDNLLLAQELIHPLDHST-HGGNVLLKLDMSKAFDMLSWKFLSLIMTKFGFSA 481
            FI  R+IQDN+L+A E+ H   + T  GG + +KLDM KA+D L WK++   M K GFS 
Sbjct: 556  FIPERLIQDNILIAHEVFHSFKNKTGRGGWIAIKLDMEKAYDRLEWKYIYTTMDKMGFSP 615

Query: 480  EWIDRILACISNSWFSVLLNGELAGFFPSSKGIRQGDPISPGLFALASDYLIRGLCAIMK 301
             WI+ I +CIS++ FSVL+NG     F  S+GIRQGDP+SP LF L ++ L R      +
Sbjct: 616  IWIEWIRSCISSASFSVLVNGIPGERFFPSRGIRQGDPLSPYLFILCAELLAR------E 669

Query: 300  DSPACAYKTK--------CKMIIPCLAFADDCLIFGMVLKLHSQK 190
             S AC    K         +  IP L FADD +IF    +    K
Sbjct: 670  FSKACHEPGKLIGVPIGRTRTRIPFLTFADDTMIFAKATEASCHK 714



 Score = 39.7 bits (91), Expect(3) = 6e-32
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = -2

Query: 784 LIPKCEGALTWKQFRPISLCTFANKIISKLLSTRLSKVLPFWIH 653
           LIPK +  +    FRPISLC+   K+ISK+++ RL   L   IH
Sbjct: 507 LIPKVDKPVNANHFRPISLCSTIYKVISKIITNRLKITLGKIIH 550



 Score = 26.6 bits (57), Expect(3) = 6e-32
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 211 SKASLSKATVFLEHYQAMSGQVINKDKSA 125
           ++AS  K    L+ Y  MSGQ++N  KSA
Sbjct: 708 TEASCHKIRQILDKYCLMSGQLVNYHKSA 736


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  113 bits (283), Expect(3) = 1e-31
 Identities = 61/148 (41%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
 Frame = -3

Query: 660 GFIKGRVIQDNLLLAQELIHPLDHSTHGGNVLLKLDMSKAFDMLSWKFLSLIMTKFGFSA 481
           GFI+ R I   ++LA E I+ L+   +GGNV LK+D++KAFD L W FL  ++ +FGF  
Sbjct: 553 GFIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDE 612

Query: 480 EWIDRILACISNSWFSVLLNGELAGFFPSSKGIRQGDPISPGLFALASDYLIRGLCAIMK 301
           +++  IL  + ++  SVL+NG+  GFF  S G+RQGDP+SP LF L  + L R L     
Sbjct: 613 KFVHWILVILQSARLSVLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALSMAAT 672

Query: 300 DSPACAYKTKCKMIIPC-LAFADDCLIF 220
           D           +  P  + +ADD LIF
Sbjct: 673 DGQLIPMSYCRGVSFPTHILYADDVLIF 700



 Score = 38.9 bits (89), Expect(3) = 1e-31
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = -2

Query: 784 LIPKCEGALTWKQFRPISLCTFANKIISKLLSTRLSKV 671
           LIPK  GA     +RPI+L  F  KIISK+L+ RL+ +
Sbjct: 505 LIPKVPGARVMGDYRPIALANFQFKIISKILADRLADI 542



 Score = 31.2 bits (69), Expect(3) = 1e-31
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 214 GSKASLSKATVFLEHYQAMSGQVINKDKSACIFSSKLSKSRQK*VILYSGFKQENLP 44
           G+K ++ +       Y  +SGQ+IN  KS   F+S ++ SR + +    GF   +LP
Sbjct: 703 GTKRNIRRLIKIFSQYSEVSGQLINNAKSR-FFTSAMTGSRVQMISSLLGFNVGSLP 758


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score =  109 bits (273), Expect(3) = 2e-31
 Identities = 64/161 (39%), Positives = 90/161 (55%), Gaps = 13/161 (8%)
 Frame = -3

Query: 663 SGFIKGRVIQDNLLLAQELIHPL--DHSTHGGNVLLKLDMSKAFDMLSWKFLSLIMTKFG 490
           S F+  R+I DN+L+AQE  H L  + +     + +K DMSKA+D + W FL  +M K G
Sbjct: 485 SAFVAERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMG 544

Query: 489 FSAEWIDRILACISNSWFSVLLNGELAGFFPSSKGIRQGDPISPGLFALASDYLIRGL-- 316
           F+ +W+D I+ CIS+  + +LLNG   GF   S+GIRQGDPISP LF L ++ L+  L  
Sbjct: 545 FAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKD 604

Query: 315 ---------CAIMKDSPACAYKTKCKMIIPCLAFADDCLIF 220
                      I + SP+ ++          L FADD L F
Sbjct: 605 AEWHGRIQGLQISRASPSTSH----------LLFADDSLFF 635



 Score = 48.5 bits (114), Expect(3) = 2e-31
 Identities = 24/48 (50%), Positives = 33/48 (68%)
 Frame = -2

Query: 784 LIPKCEGALTWKQFRPISLCTFANKIISKLLSTRLSKVLPFWIHQRES 641
           LIPK E      +FRPISLC  + K+ISK+LS+RL ++LP  I + +S
Sbjct: 438 LIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQS 485



 Score = 24.3 bits (51), Expect(3) = 2e-31
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 178 LEHYQAMSGQVINKDKSACIFSSKLSKS 95
           L  Y   SGQ +N DKS+ +F  ++  S
Sbjct: 650 LRLYGEASGQQLNPDKSSVMFGHEVDNS 677