BLASTX nr result

ID: Lithospermum22_contig00021398 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00021398
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306988.1| glutamate-gated kainate-type ion channel rec...   205   3e-51
ref|XP_002301908.1| glutamate-gated kainate-type ion channel rec...   204   5e-51
ref|XP_002272859.1| PREDICTED: glutamate receptor 3.3 [Vitis vin...   199   3e-49
emb|CAN72607.1| hypothetical protein VITISV_021339 [Vitis vinifera]   199   3e-49
dbj|BAL15056.1| glutamate receptor 3.3 [Solanum lycopersicum]         198   3e-49

>ref|XP_002306988.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222856437|gb|EEE93984.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 897

 Score =  205 bits (522), Expect = 3e-51
 Identities = 97/153 (63%), Positives = 123/153 (80%), Gaps = 1/153 (0%)
 Frame = -2

Query: 457 RNGMSALGDALVARHCKISYKVGIPPKAS-NRDDILDILVKVKDVESRIIVLHTYPTIGF 281
           RNG+SALGD L  R C+ISYKVGIPP +  NR DI+DILVKV  +ESR++++H YP +GF
Sbjct: 169 RNGVSALGDRLAERRCRISYKVGIPPDSGVNRGDIMDILVKVALMESRVVIVHVYPDMGF 228

Query: 280 MVFSVAKYLGMTGNGCVWIATDWLTSVADSSADSPLEEMDDLQGALVLRQHTANSERKRA 101
            +FS+A +L M GNG VWIATDWL+SV DS++  P E MD +QG LVLRQHT +S+R RA
Sbjct: 229 KIFSMANHLEMMGNGWVWIATDWLSSVLDSASPLPSETMDSVQGVLVLRQHTPDSDRNRA 288

Query: 100 FSKKFVKMTGGTLGLNSYGFYAYDTVWLVAHAI 2
           FS ++ K+TGG LGL+SYG YAYD+VWL+AHA+
Sbjct: 289 FSSRWHKLTGGYLGLHSYGLYAYDSVWLIAHAL 321


>ref|XP_002301908.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222843634|gb|EEE81181.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 859

 Score =  204 bits (520), Expect = 5e-51
 Identities = 99/153 (64%), Positives = 120/153 (78%), Gaps = 1/153 (0%)
 Frame = -2

Query: 457 RNGMSALGDALVARHCKISYKVGIPPKAS-NRDDILDILVKVKDVESRIIVLHTYPTIGF 281
           RNGMSALGD L  R C+ISYKVG+PP +  NR DILD+L+KV  +ESR+IVLH  P +GF
Sbjct: 170 RNGMSALGDKLAERRCRISYKVGVPPDSGVNRTDILDMLIKVASMESRVIVLHVNPDVGF 229

Query: 280 MVFSVAKYLGMTGNGCVWIATDWLTSVADSSADSPLEEMDDLQGALVLRQHTANSERKRA 101
            VFSVA  L M GNG VWIAT+WL+SV DS++  P E MD +QG L  RQHT +S+RKRA
Sbjct: 230 EVFSVANRLQMMGNGWVWIATNWLSSVLDSASPLPSETMDSIQGVLFFRQHTPDSDRKRA 289

Query: 100 FSKKFVKMTGGTLGLNSYGFYAYDTVWLVAHAI 2
           F  ++ K+TGG+LGLNSYG YAYD+VWL+AHAI
Sbjct: 290 FYSRWRKLTGGSLGLNSYGLYAYDSVWLIAHAI 322


>ref|XP_002272859.1| PREDICTED: glutamate receptor 3.3 [Vitis vinifera]
           gi|297745576|emb|CBI40741.3| unnamed protein product
           [Vitis vinifera]
          Length = 934

 Score =  199 bits (505), Expect = 3e-49
 Identities = 100/153 (65%), Positives = 122/153 (79%), Gaps = 1/153 (0%)
 Frame = -2

Query: 457 RNGMSALGDALVARHCKISYKVGIPPKAS-NRDDILDILVKVKDVESRIIVLHTYPTIGF 281
           RNG+SAL DAL  +  KIS+K GIPP AS ++ DI+DILVKV  +ESRIIVLH  P IGF
Sbjct: 178 RNGVSALDDALAEKRLKISHKEGIPPGASASQGDIMDILVKVSVLESRIIVLHVNPDIGF 237

Query: 280 MVFSVAKYLGMTGNGCVWIATDWLTSVADSSADSPLEEMDDLQGALVLRQHTANSERKRA 101
            VFSVA+YLGM  NG VWIATDWL+SV D+S+    + MD +QG LVLR+HT +S+RKRA
Sbjct: 238 KVFSVARYLGMMQNGYVWIATDWLSSVLDTSSPLASDTMDSMQGVLVLRRHTPDSDRKRA 297

Query: 100 FSKKFVKMTGGTLGLNSYGFYAYDTVWLVAHAI 2
           F  ++ K+TGG+LGLNSYG YAYDTVWL+AHA+
Sbjct: 298 FLSRWKKLTGGSLGLNSYGLYAYDTVWLLAHAL 330


>emb|CAN72607.1| hypothetical protein VITISV_021339 [Vitis vinifera]
          Length = 916

 Score =  199 bits (505), Expect = 3e-49
 Identities = 100/153 (65%), Positives = 122/153 (79%), Gaps = 1/153 (0%)
 Frame = -2

Query: 457 RNGMSALGDALVARHCKISYKVGIPPKAS-NRDDILDILVKVKDVESRIIVLHTYPTIGF 281
           RNG+SAL DAL  +  KIS+K GIPP AS ++ DI+DILVKV  +ESRIIVLH  P IGF
Sbjct: 160 RNGVSALDDALAEKRLKISHKEGIPPGASASQGDIMDILVKVSVLESRIIVLHVNPDIGF 219

Query: 280 MVFSVAKYLGMTGNGCVWIATDWLTSVADSSADSPLEEMDDLQGALVLRQHTANSERKRA 101
            VFSVA+YLGM  NG VWIATDWL+SV D+S+    + MD +QG LVLR+HT +S+RKRA
Sbjct: 220 KVFSVARYLGMMQNGYVWIATDWLSSVLDTSSPLASDTMDSMQGVLVLRRHTPDSDRKRA 279

Query: 100 FSKKFVKMTGGTLGLNSYGFYAYDTVWLVAHAI 2
           F  ++ K+TGG+LGLNSYG YAYDTVWL+AHA+
Sbjct: 280 FLSRWKKLTGGSLGLNSYGLYAYDTVWLLAHAL 312


>dbj|BAL15056.1| glutamate receptor 3.3 [Solanum lycopersicum]
          Length = 808

 Score =  198 bits (504), Expect = 3e-49
 Identities = 98/153 (64%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
 Frame = -2

Query: 457 RNGMSALGDALVARHCKISYKVGIPPKAS-NRDDILDILVKVKDVESRIIVLHTYPTIGF 281
           RNG+SAL DAL  R C+ISYKVGI P A+  R D++D++VKV  +ESR+IVLH Y  +G 
Sbjct: 183 RNGVSALDDALATRRCRISYKVGISPGATVTRGDVMDVMVKVALMESRVIVLHAYRKLGL 242

Query: 280 MVFSVAKYLGMTGNGCVWIATDWLTSVADSSADSPLEEMDDLQGALVLRQHTANSERKRA 101
           MV SVA YLGM G+G VWI+TDWLT+V DSS   P + MD +QG LVLRQHT  S+ KRA
Sbjct: 243 MVLSVAHYLGMMGDGYVWISTDWLTTVLDSSPPLPQDTMDTMQGVLVLRQHTPESKNKRA 302

Query: 100 FSKKFVKMTGGTLGLNSYGFYAYDTVWLVAHAI 2
           FS ++ K+TGG LGLNSY  +AYDTVWLVAHAI
Sbjct: 303 FSSRWNKLTGGLLGLNSYALHAYDTVWLVAHAI 335


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