BLASTX nr result

ID: Lithospermum22_contig00020753 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00020753
         (229 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003601650.1| Small subunit processome component-like prot...    77   1e-12
ref|XP_004139015.1| PREDICTED: small subunit processome componen...    71   1e-10
ref|XP_003552811.1| PREDICTED: U3 small nucleolar RNA-associated...    68   7e-10
emb|CBI17281.3| unnamed protein product [Vitis vinifera]               68   7e-10
ref|XP_002264012.1| PREDICTED: U3 small nucleolar RNA-associated...    68   7e-10

>ref|XP_003601650.1| Small subunit processome component-like protein [Medicago
           truncatula] gi|355490698|gb|AES71901.1| Small subunit
           processome component-like protein [Medicago truncatula]
          Length = 2733

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 35/50 (70%), Positives = 44/50 (88%)
 Frame = +2

Query: 80  MATPSDSTAVKSLNNGPGRRRFLFKTFAQRIDDIEIDVFRSLHPVKAEPS 229
           MATP+ + AVKSLN  PGRRRF+FK+F+ R+DDI+I+V+RSLH VKAEPS
Sbjct: 1   MATPAHAQAVKSLNKSPGRRRFVFKSFSDRVDDIDINVYRSLHKVKAEPS 50


>ref|XP_004139015.1| PREDICTED: small subunit processome component 20 homolog [Cucumis
           sativus]
          Length = 2696

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/50 (66%), Positives = 42/50 (84%)
 Frame = +2

Query: 80  MATPSDSTAVKSLNNGPGRRRFLFKTFAQRIDDIEIDVFRSLHPVKAEPS 229
           MAT S + AVKSLN  PGRRRF+F+TF+QR+ +I+IDV+RSL  VK+EPS
Sbjct: 1   MATASHAQAVKSLNKSPGRRRFVFQTFSQRVQEIDIDVYRSLDKVKSEPS 50


>ref|XP_003552811.1| PREDICTED: U3 small nucleolar RNA-associated protein 20-like
           [Glycine max]
          Length = 2653

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 32/50 (64%), Positives = 41/50 (82%)
 Frame = +2

Query: 80  MATPSDSTAVKSLNNGPGRRRFLFKTFAQRIDDIEIDVFRSLHPVKAEPS 229
           MAT S + AVKSLN  PG RRF+FK+F+ R+D+I+I+V+RSL  VKAEPS
Sbjct: 1   MATASQARAVKSLNKSPGGRRFVFKSFSDRVDEIDINVYRSLDKVKAEPS 50


>emb|CBI17281.3| unnamed protein product [Vitis vinifera]
          Length = 2629

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 32/50 (64%), Positives = 40/50 (80%)
 Frame = +2

Query: 80  MATPSDSTAVKSLNNGPGRRRFLFKTFAQRIDDIEIDVFRSLHPVKAEPS 229
           MAT   + AVKSLN   GR+RF+FK F+QR+++IEIDVFRSL P+K EPS
Sbjct: 1   MATSFHAQAVKSLNKSSGRKRFVFKNFSQRLEEIEIDVFRSLDPLKTEPS 50


>ref|XP_002264012.1| PREDICTED: U3 small nucleolar RNA-associated protein 20-like [Vitis
           vinifera]
          Length = 224

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 32/50 (64%), Positives = 40/50 (80%)
 Frame = +2

Query: 80  MATPSDSTAVKSLNNGPGRRRFLFKTFAQRIDDIEIDVFRSLHPVKAEPS 229
           MAT   + AVKSLN   GR+RF+FK F+QR+++IEIDVFRSL P+K EPS
Sbjct: 1   MATSFHAQAVKSLNKSSGRKRFVFKNFSQRLEEIEIDVFRSLDPLKTEPS 50


Top