BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00020746
         (1454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containi...   307   4e-81
ref|XP_002325952.1| predicted protein [Populus trichocarpa] gi|2...   276   1e-71
ref|XP_002525536.1| pentatricopeptide repeat-containing protein,...   265   2e-68
ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containi...   244   3e-62
ref|XP_003637044.1| Pentatricopeptide repeat-containing protein ...   218   2e-54

>ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
            mitochondrial-like [Vitis vinifera]
          Length = 582

 Score =  307 bits (787), Expect = 4e-81
 Identities = 165/422 (39%), Positives = 259/422 (61%), Gaps = 17/422 (4%)
 Frame = +3

Query: 3    SGSLDNESLNLCVNEMKKGDKTPFSGL---------GKLFPGGK-IRELI---DPERVSQ 143
            S  L N    L VN +K   +T F  L         G    G K I EL+    P+R+S+
Sbjct: 149  SSILWNTCARLNVNSLKLSTQTSFRLLSISSFDNCSGSFEFGNKGIDELVPNMSPKRISE 208

Query: 144  IVDLIKKDEDDLESRLNVLAPDLQIKTSILVFEILNIDKVSGMRLFRWVQSTNNKLHRSA 323
            I+ +I+ DE D+E +LN++   L + +   +F +LN++++S MR F W+  + + L R+ 
Sbjct: 209  IIKVIRSDEIDMEVKLNLMNLRLSVASVTEIFRVLNLERLSAMRFFEWISHSRSGLSRNY 268

Query: 324  DFCALMLCNCGHLNDYETMGMLLKEFRQKGFCLSELAFEFLIPLFVSVDSGARESIKHIV 503
            D C+L++ NCG L DYETM  LLK+F  K  CL+  AF F +P+F    +   + ++ ++
Sbjct: 269  DICSLIIDNCGRLGDYETMRCLLKDFNSKRVCLTSKAFGF-VPVFTLSKASIMDFVRKLI 327

Query: 504  ELLRKAGGSCYSSGIHSXXXXXXXXXXFDMAKYVMQITEMKVAYLNILIQEKCKRGLQED 683
            E+L   GG C  SG+            F+MAK+VM+ITE K +Y NIL++E C++   ++
Sbjct: 328  EVLDDVGGVCRRSGLFGLIEMFSVSGSFEMAKFVMEITERKTSYYNILVREMCRKCNFKE 387

Query: 684  ALGIISEMRGEGCHADTKSYNLILGSLCKMNKLDGAFSVLKDMKVQGVPADALSYDILIY 863
            A  ++ EMR  GC  + K+YN +L SLCK N+ D A +VL++M+  G P DAL+++I IY
Sbjct: 388  ARDLLDEMRLFGCRPNAKTYNYLLSSLCKNNRDDEACNVLEEMQEAGCPPDALTFEIFIY 447

Query: 864  FLCKIGKVNDAYRFFNQMVSEGIRPRLLVHASIIEAFMKVQQCEEAYRYVVDSCVKDPYS 1043
            +  ++GK++ A +F +QMVS G+ PRL  HA+ I+ +   ++ EEAY YVVDS V   + 
Sbjct: 448  YTYRLGKLDFAIKFLDQMVSRGLEPRLTTHAAFIKGYFHSRRYEEAYEYVVDSGVTYKWP 507

Query: 1044 SPMIYTFLVKEHRKRGDIMSAQNIILEMMDKGLRPNYNEYMKVLRSL----KGQLATDLK 1211
            S MIY+ L   H++ G+++SAQ I++EM++KGL+PN++ Y +VL  L    +  LA DL+
Sbjct: 508  SNMIYSLLASLHQRNGNLISAQKILIEMIEKGLKPNFSVYKRVLEHLDKSGREDLAGDLR 567

Query: 1212 NR 1217
            +R
Sbjct: 568  SR 569


>ref|XP_002325952.1| predicted protein [Populus trichocarpa] gi|222862827|gb|EEF00334.1|
            predicted protein [Populus trichocarpa]
          Length = 432

 Score =  276 bits (706), Expect = 1e-71
 Identities = 161/416 (38%), Positives = 246/416 (59%), Gaps = 9/416 (2%)
 Frame = +3

Query: 15   DNESLNL-----CVNEMKKGDKTPFSGLGKLFPGGKIRELIDPERVSQIVDLIKKDEDDL 179
            +++SLNL      ++   +G KT    + K    G++R     ++V+ I+DLIK+DE DL
Sbjct: 17   NSQSLNLYFFKSSIHGYLRGYKTSSFDVYKEMGTGRVRPKAMQKQVAYIIDLIKRDEYDL 76

Query: 180  ESRLNVLAPDLQIKTSILVFEILNIDKVSGMRLFRWVQSTNNKLHRSADFCALMLCNCGH 359
            E +L  L+  L I +  LVF +LN +KVS +R FRW++    +L  ++D C+L++ NCG 
Sbjct: 77   EYKLGSLSVKLSIASVTLVFHVLNSEKVSALRFFRWIRHWQPELRCNSDICSLVIDNCGR 136

Query: 360  LNDYETMGMLLKEFRQKGFCLSELAFEFLIPLFVSVDSGARESIKHIVELLRKAGGSCYS 539
            L+DY+ M  LL EF +   CL++ AFEFL  + V+ +S   ES + ++ LL +  GSCY 
Sbjct: 137  LDDYDAMRSLLNEFNENQLCLTKKAFEFLHVMNVTNESLV-ESTQRVIVLLLEVRGSCYG 195

Query: 540  SGIHSXXXXXXXXXXFDMAKYVMQITEMKVAYLNILIQEKCKRGLQEDALGIISEMRGEG 719
              + S          FDM ++VM+ TE K++Y  I I+E C+R   +    I  EMR EG
Sbjct: 196  -WVSSLIEMFSVLGSFDMVEFVMKKTERKISYYYIFIREMCRRCDFKGVRDIQDEMRKEG 254

Query: 720  CHADTKSYNLILGSLCKMNKLDGAFSVLKDMKVQGVPADALSYDILIYFLCKIGKVNDAY 899
               + + YN ++  L K  +   A  VL +M+ +  P DAL+++I IY+ C  GK   A 
Sbjct: 255  FELNARIYNYLISCLLKNGEYADACKVLTEMQDKDCPPDALTFEIFIYYCCNNGKTEIAC 314

Query: 900  RFFNQMVSEGIRPRLLVHASIIEAFMKVQQCEEAYRYVVDSCVKDPYSSPMIYTFLVKEH 1079
             +F+++V+ G+ PRL  HA+ I+ F   +Q EEAY+YVVDS  K   +S M Y+ L + H
Sbjct: 315  HYFDEIVARGLEPRLSTHAAFIKGFFNSEQYEEAYKYVVDSDKKYKCTSCMNYSLLARLH 374

Query: 1080 RKRGDIMSAQNIILEMMDKGLRPNYNEYMKVLRSL----KGQLATDLKNRNFKESH 1235
            +KRG+++ AQNI+ EM+ KGLRP +  YMKV   L    +  LATDL+ + F + H
Sbjct: 375  QKRGNLVIAQNILSEMIKKGLRPYFKVYMKVFNCLNKSGRETLATDLQEQ-FHQLH 429


>ref|XP_002525536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535215|gb|EEF36894.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 430

 Score =  265 bits (678), Expect = 2e-68
 Identities = 141/375 (37%), Positives = 237/375 (63%), Gaps = 4/375 (1%)
 Frame = +3

Query: 105  KIRELIDPERVSQIVDLIKKDEDDLESRLNVLAPDLQIKTSILVFEILNIDKVSGMRLFR 284
            ++R     ++VS I+ L+  ++++LE++LN L   L I +   VF++LN +K S ++ F 
Sbjct: 51   ELRPKATRKQVSVIIGLLITEDNELETKLNSLGVRLSIGSVRWVFQVLNREKKSALQFFH 110

Query: 285  WVQSTNNKLHRSADFCALMLCNCGHLNDYETMGMLLKEFRQKGFCLSELAFEFLIPLFVS 464
            W++    +L  ++D C+L++ NCGHL+DY+ M  LL  F  +   L++ AFE+L  L  S
Sbjct: 111  WIRRWQPELEGNSDICSLVIDNCGHLDDYKAMRCLLDGFSLQRLFLTKKAFEYL-QLTSS 169

Query: 465  VDSGARESIKHIVELLRKAGGSCYSSGIHSXXXXXXXXXXFDMAKYVMQITEMKVAYLNI 644
             +   +++ +++V++L++ GG+ Y +G+ S          FDMAK+V++ T  K++Y N+
Sbjct: 170  KEELLKKATQNVVDILQEIGGTSYGTGVPSLIEMFSDLGSFDMAKFVIEKTGRKLSYYNV 229

Query: 645  LIQEKCKRGLQEDALGIISEMRGEGCHADTKSYNLILGSLCKMNKLDGAFSVLKDMKVQG 824
            LI+E C+RG  + A  ++ E+  EGC+    +YN I+ SL K  K   A  V ++M+   
Sbjct: 230  LIRELCRRGDFKAARDLMDEIGKEGCNPSAHTYNYIISSLLKNGKNADACEVFQEMQDND 289

Query: 825  VPADALSYDILIYFLCKIGKVNDAYRFFNQMVSEGIRPRLLVHASIIEAFMKVQQCEEAY 1004
             P DAL+++I IY  C  GK+++A+ FF+ MV+ G+ PRLL HA+ I+ F   QQ E+AY
Sbjct: 290  CPPDALTFEIFIYNSCNEGKLDNAFEFFDDMVARGLEPRLLTHAAFIKGFFNSQQYEKAY 349

Query: 1005 RYVVDSCVKDPYSSPMIYTFLVKEHRKRGDIMSAQNIILEMMDKGLRPNYNEYMKV---- 1172
            +YVV S   D YSS + Y+ L   H+K+G+++ A+NI+ EM+ KGLRP++N +MKV    
Sbjct: 350  KYVVGS--DDKYSSNVNYSLLANLHQKQGNLVDAENILSEMIKKGLRPHFNVFMKVKKHL 407

Query: 1173 LRSLKGQLATDLKNR 1217
            ++S   +LAT L+ +
Sbjct: 408  MKSGNEELATSLQKK 422


>ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
            mitochondrial-like [Cucumis sativus]
            gi|449498723|ref|XP_004160616.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g05670,
            mitochondrial-like [Cucumis sativus]
          Length = 494

 Score =  244 bits (624), Expect = 3e-62
 Identities = 137/373 (36%), Positives = 230/373 (61%), Gaps = 7/373 (1%)
 Frame = +3

Query: 120  IDPERVSQIVDLIKKDEDDLESRLNVLAPDLQIKTSILV---FEILNIDKVSGMRLFRWV 290
            +   ++S I+++I+++++DLES+L+  +P++++ T++LV    E+LN  K+S  R F WV
Sbjct: 114  VTSNQLSNIINIIRENQEDLESKLD--SPNVRL-TNVLVGQILEMLNKHKISASRFFNWV 170

Query: 291  QSTNNKLHRSADFCALMLCNCGHLNDYETMGMLLKEFRQKGFCLSELAFEFLIPLFVSVD 470
               + K   ++D  +L++ N G L+DYE +  +L EF  KG  L+  AF FL+PL  S +
Sbjct: 171  SVQSCKFPCNSDVYSLLIDNFGRLDDYEGILPVLIEFGLKGIELNHKAFGFLLPL--SNE 228

Query: 471  SGARESIKHIVELLRKAGGSCYSSGIHSXXXXXXXXXXFDMAKYVMQITEMKVAYLNILI 650
               + S+  +V+LL +AGG+C  SGI +          F MAK+V++ITE + ++  I++
Sbjct: 229  HSMKLSVVKLVKLLNEAGGTCRLSGIMALIEMFCSLGSFGMAKFVIEITEKRSSFYYIIV 288

Query: 651  QEKCKRGLQEDALGIISEMRGEGCHADTKSYNLILGSLCKMNKLDGAFSVLKDMKVQGVP 830
            +EKCK+   E A   + EMR  GC  D    N +L SLCK +K   A ++L++M  Q   
Sbjct: 289  REKCKQKDFEGARCTLDEMRQVGCIPDAGILNYLLSSLCKNDKFGEAHNLLEEMLEQNCS 348

Query: 831  ADALSYDILIYFLCKIGKVNDAYRFFNQMVSEGIRPRLLVHASIIEAFMKVQQCEEAYRY 1010
             ++L+++I+I  LCKIG +  A  + + MV+ G+ PRL  HA+ ++++   Q+ EEAY+Y
Sbjct: 349  PNSLTFEIIICHLCKIGNIESALGYLDMMVAGGLMPRLSTHAAFVKSYFSSQRYEEAYQY 408

Query: 1011 VVDSCVKDPYSSPMIYTFLVKEHRKRGDIMSAQNIILEMMDKGLRPNYNEYMKVLRSL-- 1184
             VDS +K   +    Y+ L   H KRG+++ AQ I+ E+MD GL+P+++ Y ++L+ L  
Sbjct: 409  AVDSSLKYVTTQNATYSLLATLHEKRGNLVDAQKILSELMDAGLKPHFHVYTRLLKKLQV 468

Query: 1185 --KGQLATDLKNR 1217
              +G LA DLK +
Sbjct: 469  QGRGDLANDLKRK 481


>ref|XP_003637044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|358346621|ref|XP_003637365.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
            gi|355502979|gb|AES84182.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
            gi|355503300|gb|AES84503.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 448

 Score =  218 bits (556), Expect = 2e-54
 Identities = 118/360 (32%), Positives = 205/360 (56%)
 Frame = +3

Query: 129  ERVSQIVDLIKKDEDDLESRLNVLAPDLQIKTSILVFEILNIDKVSGMRLFRWVQSTNNK 308
            ++VSQI+ ++ + ++ LE RLN++   L + + I +F+ L   +VS +  F W+  ++ +
Sbjct: 77   KQVSQIIAMVIEGDNGLEHRLNMMNVSLSMASVIYIFDALASQRVSALMFFHWLNVSHPE 136

Query: 309  LHRSADFCALMLCNCGHLNDYETMGMLLKEFRQKGFCLSELAFEFLIPLFVSVDSGARES 488
            L    +    ++ NCG L D++ M  +L++F  K  CL   AF FL+ L++  DS  R  
Sbjct: 137  LCCDPEIGCCVVDNCGLLRDFDAMVPILRDFNSKRVCLGRRAFRFLVVLWLDEDS--RMD 194

Query: 489  IKHIVELLRKAGGSCYSSGIHSXXXXXXXXXXFDMAKYVMQITEMKVAYLNILIQEKCKR 668
            I  IV +L++ GG C SSG+            FD+A++V+      V   N L++  CKR
Sbjct: 195  IVRIVNVLKEVGGVCQSSGVKVLIELLSFSGIFDVAEFVIGEAGRNVDRYNFLLRMICKR 254

Query: 669  GLQEDALGIISEMRGEGCHADTKSYNLILGSLCKMNKLDGAFSVLKDMKVQGVPADALSY 848
            G  E  + ++ +M+  G   +  +YNL++  L K+     A  VL+ M+ +   +   ++
Sbjct: 255  GDYERVVDLVEKMKKIGVEPNGSTYNLLISCLFKIGNFAEACQVLETMENENGLSKEFTF 314

Query: 849  DILIYFLCKIGKVNDAYRFFNQMVSEGIRPRLLVHASIIEAFMKVQQCEEAYRYVVDSCV 1028
            D +I  LCK G+++ A +F ++M  +G+ P  L HA++I+ + ++ + +EA+ YVV    
Sbjct: 315  DTIIRLLCKHGQIDLALKFIDKMTLKGVEPCSLTHAAVIKCYFELGKYDEAHEYVVVCAG 374

Query: 1029 KDPYSSPMIYTFLVKEHRKRGDIMSAQNIILEMMDKGLRPNYNEYMKVLRSLKGQLATDL 1208
            K+ YSS   YT L   H K+G ++ +Q I+ EMMDKGL+PNY+ YMK+ +  + +  TDL
Sbjct: 375  KNSYSSNENYTLLASLHFKKGSVLLSQRILHEMMDKGLKPNYSVYMKIRKYFEKKNKTDL 434