BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00020496
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               70   7e-23
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]    69   4e-22
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    69   1e-21
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...    64   2e-21
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]            65   3e-21

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 69.7 bits (169), Expect(2) = 7e-23
 Identities = 32/72 (44%), Positives = 48/72 (66%)
 Frame = -3

Query: 234  GFLQSRADSSLFIFSRAGVKLVMLVYMDDILVTSNSPSAVDLFIGAHNSTFVTGDLGGLS 55
            GFL+SRAD S+F F+  G+ +++L+Y+DDIL+T N+ S +   I   NS F   DLG + 
Sbjct: 1042 GFLESRADYSMFTFNNRGIYIILLIYVDDILITGNNSSHISHLIHNLNSLFSMKDLGSVH 1101

Query: 54   FFLRIDDIRQGD 19
            +FL I+ +  GD
Sbjct: 1102 YFLGIETVYNGD 1113



 Score = 62.4 bits (150), Expect(2) = 7e-23
 Identities = 28/56 (50%), Positives = 36/56 (64%)
 Frame = -2

Query: 415  IQNAFLHNTLT*TVYMVQLPGFVDERYLDLVCKLDKSIYKLKQVVRAWFHCLHEFL 248
            +QN FLH  L   +YM Q  GFVD ++   VCKL +S+Y LKQ  RAWF C  ++L
Sbjct: 983  VQNVFLHGYLNEDIYMKQHVGFVDPKFPQHVCKLRRSLYGLKQAPRAWFRCFSDYL 1038


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score = 68.6 bits (166), Expect(2) = 4e-22
 Identities = 36/79 (45%), Positives = 51/79 (64%)
 Frame = -3

Query: 258  MSFCYLAYGFLQSRADSSLFIFSRAGVKLVMLVYMDDILVTSNSPSAVDLFIGAHNSTFV 79
            +S   L +GF  SRADSS+FI       L++L+Y+DDILVT +S + V  FI   NS+F 
Sbjct: 872  LSTSLLGWGFQASRADSSMFIHHSTHDVLILLIYVDDILVTGSSSAQVSSFITRLNSSFA 931

Query: 78   TGDLGGLSFFLRIDDIRQG 22
              DLG +++FL I+ +R G
Sbjct: 932  LRDLGYVNYFLGIEVVRSG 950



 Score = 60.8 bits (146), Expect(2) = 4e-22
 Identities = 29/57 (50%), Positives = 39/57 (68%)
 Frame = -2

Query: 415 IQNAFLHNTLT*TVYMVQLPGFVDERYLDLVCKLDKSIYKLKQVVRAWFHCLHEFLL 245
           +QNAFLH  L   V+M Q PGF++ +Y   VCKL+K++Y LKQ  RAW++ L   LL
Sbjct: 821 VQNAFLHGDLEEHVFMQQPPGFINSQYPSHVCKLNKALYGLKQAPRAWYNKLSTSLL 877


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 68.9 bits (167), Expect(2) = 1e-21
 Identities = 34/76 (44%), Positives = 49/76 (64%)
 Frame = -3

Query: 234  GFLQSRADSSLFIFSRAGVKLVMLVYMDDILVTSNSPSAVDLFIGAHNSTFVTGDLGGLS 55
            GF+ S+AD SLFI++     + +LVY+DDI++T +SP A+D  +      F   DLG L 
Sbjct: 1093 GFVPSKADVSLFIYNAHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLH 1152

Query: 54   FFLRIDDIRQGDGSLL 7
            +FL I+  R+GDG LL
Sbjct: 1153 YFLGIEVHRKGDGLLL 1168



 Score = 58.9 bits (141), Expect(2) = 1e-21
 Identities = 31/58 (53%), Positives = 36/58 (62%)
 Frame = -2

Query: 415  IQNAFLHNTLT*TVYMVQLPGFVDERYLDLVCKLDKSIYKLKQVVRAWFHCLHEFLLS 242
            +QNAFLH  L  TVYM Q PGF D  + +  C L KS+Y LKQ  RAW+  L E L S
Sbjct: 1034 VQNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQS 1091


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score = 64.3 bits (155), Expect(2) = 2e-21
 Identities = 32/58 (55%), Positives = 38/58 (65%)
 Frame = -2

Query: 415  IQNAFLHNTLT*TVYMVQLPGFVDERYLDLVCKLDKSIYKLKQVVRAWFHCLHEFLLS 242
            +QNAFLH  L   VYM Q PG+ D   L+ VCKLDK++Y LKQ  RAW+  L   LLS
Sbjct: 914  VQNAFLHGVLEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLS 971



 Score = 63.2 bits (152), Expect(2) = 2e-21
 Identities = 31/79 (39%), Positives = 50/79 (63%)
 Frame = -3

Query: 243  LAYGFLQSRADSSLFIFSRAGVKLVMLVYMDDILVTSNSPSAVDLFIGAHNSTFVTGDLG 64
            L+ GF  S+AD+SLF +++  V + +LVY+DDI+V S++  A +  +   N  F   DLG
Sbjct: 970  LSLGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLG 1029

Query: 63   GLSFFLRIDDIRQGDGSLL 7
             L++FL I+  +  DG +L
Sbjct: 1030 DLNYFLGIEVNKVRDGIIL 1048


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score = 65.5 bits (158), Expect(2) = 3e-21
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
 Frame = -3

Query: 270  FTVYMSFCYLAYGFLQSRADSSLFIFSRAGVKLVMLVYMDDILVTSNSPSAVD-LFIGAH 94
            + +Y   C L  GF  S+AD+SLF + +  V +  LVY+DDI+V S+S  A+  L +G  
Sbjct: 796  YRLYDKLCQL--GFSASKADTSLFFYRKGDVVIYFLVYVDDIIVVSSSDQAIPALPLGFL 853

Query: 93   NSTFVTGDLGGLSFFLRIDDIRQGDGSLLLS 1
            N+ F   DLG L +FL I+     +GSL+LS
Sbjct: 854  NAEFALKDLGNLHYFLCIEVTPSSEGSLVLS 884



 Score = 61.2 bits (147), Expect(2) = 3e-21
 Identities = 29/56 (51%), Positives = 39/56 (69%)
 Frame = -2

Query: 415 IQNAFLHNTLT*TVYMVQLPGFVDERYLDLVCKLDKSIYKLKQVVRAWFHCLHEFL 248
           ++NAFLH  L   VYM Q PG+VD+     VCKLDK++Y LKQ  RAW++ L++ L
Sbjct: 747 VKNAFLHGILEEEVYMKQPPGYVDKSSSYYVCKLDKALYGLKQAPRAWYYRLYDKL 802