BLASTX nr result

ID: Lithospermum22_contig00019423 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00019423
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305655.1| f-box family protein [Populus trichocarpa] g...    80   2e-13
ref|XP_002316660.1| predicted protein [Populus trichocarpa] gi|2...    79   4e-13
ref|XP_003634996.1| PREDICTED: F-box protein SKIP27-like [Vitis ...    75   6e-12
emb|CBI23311.3| unnamed protein product [Vitis vinifera]               75   6e-12
emb|CBI23307.3| unnamed protein product [Vitis vinifera]               75   6e-12

>ref|XP_002305655.1| f-box family protein [Populus trichocarpa]
           gi|222848619|gb|EEE86166.1| f-box family protein
           [Populus trichocarpa]
          Length = 189

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = -2

Query: 431 IKEAAMVAKKLHFEFSTPRKTVGFRSVADNEWLSGLSDVEAPNAPKQSRR-RSELNRKKL 255
           I+EA ++AK+ HF +STPRK+ GFRS  D E    L ++EAPNAPKQ R  +S LNRK +
Sbjct: 109 IREATLIAKESHFAYSTPRKSQGFRSPFDLENPGELDEIEAPNAPKQRRSYKSRLNRKSI 168

Query: 254 SDISVALFAS 225
           +D+SVALFAS
Sbjct: 169 ADVSVALFAS 178


>ref|XP_002316660.1| predicted protein [Populus trichocarpa] gi|222859725|gb|EEE97272.1|
           predicted protein [Populus trichocarpa]
          Length = 189

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = -2

Query: 431 IKEAAMVAKKLHFEFSTPRKTVGFRSVADNEWLSGLSDVEAPNAPKQSRR-RSELNRKKL 255
           I+EA ++AK+ HF +STPRKT  FR+  D    SGL ++EAPNAPKQ R  +S LNRK +
Sbjct: 109 IREATLIAKEWHFAYSTPRKTQAFRTRIDFGNPSGLDEIEAPNAPKQRRSYKSLLNRKSI 168

Query: 254 SDISVALFAS 225
           +D+SVALFAS
Sbjct: 169 ADVSVALFAS 178


>ref|XP_003634996.1| PREDICTED: F-box protein SKIP27-like [Vitis vinifera]
          Length = 172

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = -2

Query: 434 SIKEAAMVAKKLHFEFSTPRKTVGFRSVADNEWLSGLSDVEAPNAPKQSRR-RSELNRKK 258
           +I++A ++AKK HF +STP K   FRS  D E  SG  D++ P+APKQSR  RS L  +K
Sbjct: 99  TIRDATLIAKKSHFAYSTPSKVQTFRSPLDPEESSGFDDLQTPDAPKQSRHFRSRLRGRK 158

Query: 257 LSDISVALFASDD 219
           LS I++ALF+SD+
Sbjct: 159 LSGIAIALFSSDE 171


>emb|CBI23311.3| unnamed protein product [Vitis vinifera]
          Length = 430

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = -2

Query: 434 SIKEAAMVAKKLHFEFSTPRKTVGFRSVADNEWLSGLSDVEAPNAPKQSRR-RSELNRKK 258
           +I++A ++AKK HF +STP K   FRS  D E  SG  D++ P+APKQSR  RS L  +K
Sbjct: 357 TIRDATLIAKKSHFAYSTPSKVQTFRSPLDPEESSGFDDLQTPDAPKQSRHFRSRLRGRK 416

Query: 257 LSDISVALFASDD 219
           LS I++ALF+SD+
Sbjct: 417 LSGIAIALFSSDE 429


>emb|CBI23307.3| unnamed protein product [Vitis vinifera]
          Length = 113

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = -2

Query: 434 SIKEAAMVAKKLHFEFSTPRKTVGFRSVADNEWLSGLSDVEAPNAPKQSRR-RSELNRKK 258
           +I++A ++AKK HF FSTP K   FRS  D E  SG  D++ P+APKQSR  RS L  ++
Sbjct: 40  TIRDATLIAKKSHFAFSTPSKVQTFRSPLDPEESSGFDDLQTPDAPKQSRHFRSRLRGRR 99

Query: 257 LSDISVALFASDD 219
           LS I++ALF+SD+
Sbjct: 100 LSGIAIALFSSDE 112


Top