BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00019416
         (1342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533746.1| ubiquitin fusion degradaton protein, putativ...   404   e-110
gb|ABK94471.1| unknown [Populus trichocarpa]                          403   e-110
ref|XP_002299862.1| predicted protein [Populus trichocarpa] gi|2...   402   e-109
ref|XP_003547271.1| PREDICTED: ubiquitin fusion degradation prot...   398   e-108
ref|NP_973557.1| ubiquitin fusion degradation UFD1-like protein ...   389   e-106

>ref|XP_002533746.1| ubiquitin fusion degradaton protein, putative [Ricinus communis]
            gi|223526334|gb|EEF28633.1| ubiquitin fusion degradaton
            protein, putative [Ricinus communis]
          Length = 315

 Score =  404 bits (1039), Expect = e-110
 Identities = 207/318 (65%), Positives = 242/318 (76%), Gaps = 5/318 (1%)
 Frame = -2

Query: 1092 DDSVFEQSYRCYPVSFIEKSHLEKGDKVIMPPSALDRLANLQIDYPMLFELSNPSGRKVS 913
            + S+FE+SYRCYP SFI+K HLEKGDK+IMPPSALD+LA+L IDYPMLFEL NPS  +V+
Sbjct: 7    NSSMFERSYRCYPGSFIDKPHLEKGDKIIMPPSALDQLASLHIDYPMLFELRNPSAERVT 66

Query: 912  HCGVLEFVADEGLIYLPYWMMENMLLQEGDILQVKNTSLSKGTYVKLQPHTQDFLDVSNP 733
            HCGVLEFVADEGLI+LPYWMMENMLLQEGD++Q+KN SL KGTYVKLQPHT DFLD+SNP
Sbjct: 67   HCGVLEFVADEGLIFLPYWMMENMLLQEGDLVQLKNASLMKGTYVKLQPHTTDFLDISNP 126

Query: 732  KAILEITLRNYSCLTTGDTIMVPYNNKKFYIDIVETKPSPAISIIETDCEVDFAPPLDYK 553
            KAILE +LRNYSCLTTGDTIMV YNNKK+YIDIVETKPSPA+SIIETDCEVDFAPPLDYK
Sbjct: 127  KAILETSLRNYSCLTTGDTIMVAYNNKKYYIDIVETKPSPAVSIIETDCEVDFAPPLDYK 186

Query: 552  EPEKPVKLAKPCLKNKTRPEEEEEATKRV-KFNPFCGSARRLDGKXXXXXXXXXXXPLPD 376
            EPEKP    +    N+TRP+ EEE  K++ KF+PF G+ARRLDGK           P+  
Sbjct: 187  EPEKPSPSPR---SNQTRPKVEEEPAKKIPKFSPFSGAARRLDGKLSTQPVAAVTEPVLK 243

Query: 375  QPKKEDASGTNGSTTSNRP----SGKLVFGPTRATGLNKNQNETAKETCKALSTSQDATK 208
            Q + E  +   GS  SN      SGKL+FG       N NQ +       A  +S +A +
Sbjct: 244  QHQSEAGTDIRGSKPSNAASRSHSGKLIFGS------NANQPQNEAREIAAKKSSPEAPQ 297

Query: 207  PTDEPKFQAFSGKKYSLK 154
              + PKFQAF+GK+YSLK
Sbjct: 298  KAEPPKFQAFTGKRYSLK 315


>gb|ABK94471.1| unknown [Populus trichocarpa]
          Length = 314

 Score =  403 bits (1036), Expect = e-110
 Identities = 211/314 (67%), Positives = 242/314 (77%), Gaps = 3/314 (0%)
 Frame = -2

Query: 1086 SVFEQSYRCYPVSFIEKSHLEKGDKVIMPPSALDRLANLQIDYPMLFELSNPSGRKVSHC 907
            S FEQSYRCYPVSFI+K+HLEKGDK+IMPPSALDRLA L IDYPMLFEL NPS  + SHC
Sbjct: 9    SSFEQSYRCYPVSFIDKAHLEKGDKIIMPPSALDRLATLHIDYPMLFELHNPSAGRTSHC 68

Query: 906  GVLEFVADEGLIYLPYWMMENMLLQEGDILQVKNTSLSKGTYVKLQPHTQDFLDVSNPKA 727
            GVLEF+ADEG+IYLPYWMMENMLLQEGDI+Q++NTSL KGT+VKLQPHT+DFLD+SNPKA
Sbjct: 69   GVLEFIADEGMIYLPYWMMENMLLQEGDIVQLRNTSLEKGTFVKLQPHTKDFLDISNPKA 128

Query: 726  ILEITLRNYSCLTTGDTIMVPYNNKKFYIDIVETKPSPAISIIETDCEVDFAPPLDYKEP 547
            ILE +LRNYSCLTTGDTIMV YNNKK+YIDIVE KPS AISIIETDCEVDFAPPLDYKEP
Sbjct: 129  ILETSLRNYSCLTTGDTIMVAYNNKKYYIDIVEAKPSSAISIIETDCEVDFAPPLDYKEP 188

Query: 546  EKPVKLAKPCLKNKTRPE-EEEEATKRVKFNPFCGSARRLDGKXXXXXXXXXXXPL--PD 376
            EKP  + +    NK  PE  EE A K  +F+ F GSARRLDGK           P     
Sbjct: 189  EKPKSIPR---SNKIPPEGMEEPAAKMPRFSAFTGSARRLDGKPATQPTASTICPALKQH 245

Query: 375  QPKKEDASGTNGSTTSNRPSGKLVFGPTRATGLNKNQNETAKETCKALSTSQDATKPTDE 196
            QP+ E+      S+ S++ SGKLVFG T     N+ QNET K   K   ++Q+  +  ++
Sbjct: 246  QPEAENNGSKLLSSLSHQQSGKLVFGSTS----NQPQNETPKVPLK--KSTQEPPQKVED 299

Query: 195  PKFQAFSGKKYSLK 154
            PKFQAF+GKKYSLK
Sbjct: 300  PKFQAFTGKKYSLK 313


>ref|XP_002299862.1| predicted protein [Populus trichocarpa] gi|222847120|gb|EEE84667.1|
            predicted protein [Populus trichocarpa]
          Length = 306

 Score =  402 bits (1032), Expect = e-109
 Identities = 210/313 (67%), Positives = 241/313 (76%), Gaps = 2/313 (0%)
 Frame = -2

Query: 1086 SVFEQSYRCYPVSFIEKSHLEKGDKVIMPPSALDRLANLQIDYPMLFELSNPSGRKVSHC 907
            S FEQSYRCYPVSFI+K+HLEKGDK+IMPPSALDRLA L IDYPMLFEL NPS  + SHC
Sbjct: 4    SSFEQSYRCYPVSFIDKAHLEKGDKIIMPPSALDRLATLHIDYPMLFELHNPSAGRTSHC 63

Query: 906  GVLEFVADEGLIYLPYWMMENMLLQEGDILQVKNTSLSKGTYVKLQPHTQDFLDVSNPKA 727
            GVLEF+ADEG+IYLPYWMMENMLLQEGDI+Q++NTSL KGT+VKLQPHT+DFLD+SNPKA
Sbjct: 64   GVLEFIADEGMIYLPYWMMENMLLQEGDIVQLRNTSLEKGTFVKLQPHTKDFLDISNPKA 123

Query: 726  ILEITLRNYSCLTTGDTIMVPYNNKKFYIDIVETKPSPAISIIETDCEVDFAPPLDYKEP 547
            ILE +LRNYSCLTTGDTIMV YNNKK+YIDIVE KPS AISIIETDCEVDFAPPLDYKEP
Sbjct: 124  ILETSLRNYSCLTTGDTIMVAYNNKKYYIDIVEAKPSSAISIIETDCEVDFAPPLDYKEP 183

Query: 546  EKPVKLAKPCLKNKTRPEEEEEATKRVKFNPFCGSARRLDGKXXXXXXXXXXXPL--PDQ 373
            EKP  + +    NK  P  EE A K  +F+ F GSARRLDGK           P     Q
Sbjct: 184  EKPKSIPR---SNKIPP--EEPAAKMPRFSAFTGSARRLDGKPATQPTASTICPALKQHQ 238

Query: 372  PKKEDASGTNGSTTSNRPSGKLVFGPTRATGLNKNQNETAKETCKALSTSQDATKPTDEP 193
            P+ E+      S+ S++ SGKLVFG T     N+ QNET K   K   ++Q+  +  ++P
Sbjct: 239  PEAENNGSKLLSSLSHQQSGKLVFGSTS----NQPQNETPKVPLK--KSTQEPPQKVEDP 292

Query: 192  KFQAFSGKKYSLK 154
            KFQAF+GKKYSLK
Sbjct: 293  KFQAFTGKKYSLK 305


>ref|XP_003547271.1| PREDICTED: ubiquitin fusion degradation protein 1 homolog [Glycine
            max]
          Length = 318

 Score =  398 bits (1022), Expect = e-108
 Identities = 204/323 (63%), Positives = 248/323 (76%), Gaps = 7/323 (2%)
 Frame = -2

Query: 1101 FQEDD--SVFEQSYRCYPVSFIEKSHLEKGDKVIMPPSALDRLANLQIDYPMLFELSNPS 928
            +  DD  + FEQ YRCYPVSFIEK  LEKGDK+IMPPSALDRLA+L I+YPMLF++ NPS
Sbjct: 3    YYRDDRFATFEQFYRCYPVSFIEKPDLEKGDKIIMPPSALDRLASLHIEYPMLFQIKNPS 62

Query: 927  GRKVSHCGVLEFVADEGLIYLPYWMMENMLLQEGDILQVKNTSLSKGTYVKLQPHTQDFL 748
              +V+HCGVLEFV+DEG+IY+PYWMMENMLLQEGDI++VKNT+L+KGTYVKLQPHT+DFL
Sbjct: 63   AERVTHCGVLEFVSDEGIIYIPYWMMENMLLQEGDIVKVKNTNLAKGTYVKLQPHTKDFL 122

Query: 747  DVSNPKAILEITLRNYSCLTTGDTIMVPYNNKKFYIDIVETKPSPAISIIETDCEVDFAP 568
            D+SNPKAILE TLR+YSCLTTGDTIMVPYNNKK+YIDIVETKPSPA+SIIETDCEVDFAP
Sbjct: 123  DISNPKAILETTLRSYSCLTTGDTIMVPYNNKKYYIDIVETKPSPAVSIIETDCEVDFAP 182

Query: 567  PLDYKEPEKPVKLAKPCLKNKTRPE-EEEEATKRVKFNPFCGSARRLDGK-XXXXXXXXX 394
            PLDYKEPEK    AKP + ++ RP+ E+E  TK  +  PF GS RRLDGK          
Sbjct: 183  PLDYKEPEKQ---AKPVVFDRKRPKVEDEPPTKIARLTPFTGSGRRLDGKPSAPSVEQTS 239

Query: 393  XXPLPDQPKKEDASGT---NGSTTSNRPSGKLVFGPTRATGLNKNQNETAKETCKALSTS 223
               L  +   ++  G+   + +T S R SGKLVFG    T   +   + ++E     +TS
Sbjct: 240  SPELKQRQTDKEIKGSDSKSSNTVSRRHSGKLVFGSNATTSDIQTTPKVSQE-----NTS 294

Query: 222  QDATKPTDEPKFQAFSGKKYSLK 154
            Q+ ++  +EPKF+AF+GKKYSLK
Sbjct: 295  QEKSQKEEEPKFKAFTGKKYSLK 317


>ref|NP_973557.1| ubiquitin fusion degradation UFD1-like protein [Arabidopsis thaliana]
            gi|44917441|gb|AAS49045.1| At2g29070 [Arabidopsis
            thaliana] gi|45773886|gb|AAS76747.1| At2g29070
            [Arabidopsis thaliana] gi|111609944|gb|ABH11522.1| UFD1c
            [synthetic construct] gi|330253112|gb|AEC08206.1|
            ubiquitin fusion degradation UFD1-like protein
            [Arabidopsis thaliana]
          Length = 312

 Score =  389 bits (999), Expect = e-106
 Identities = 200/322 (62%), Positives = 235/322 (72%), Gaps = 10/322 (3%)
 Frame = -2

Query: 1092 DDSVFEQSYRCYPVSFIEKSHLEKGDKVIMPPSALDRLANLQIDYPMLFELSNPSGRKVS 913
            D S FEQ YRCYPV+FI+K+HLEKGDK+IMPPSALDRLA+L I+YPMLF+LSN S  K S
Sbjct: 4    DGSSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTS 63

Query: 912  HCGVLEFVADEGLIYLPYWMMENMLLQEGDILQVKNTSLSKGTYVKLQPHTQDFLDVSNP 733
            HCGVLEF ADEGL+YLPYWMM+NM L+EGD++QVKN SL KGTY+KLQPHTQDFLD+SNP
Sbjct: 64   HCGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLDISNP 123

Query: 732  KAILEITLRNYSCLTTGDTIMVPYNNKKFYIDIVETKPSPAISIIETDCEVDFAPPLDYK 553
            KAILE TLR+YSCLTTGDTIMVPYNNK++YI++VE KPS A+SIIETDCEVDFAPPLDYK
Sbjct: 124  KAILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYK 183

Query: 552  EPEKPVKLAKPCLKNKTRPEEEEEATKRVKFNPFCGSARRLDGKXXXXXXXXXXXPLPDQ 373
            EPEKP KL     +     EEEE A+K  KF PF GS +RLDGK             P+ 
Sbjct: 184  EPEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTGSGKRLDGKAQTQTE-------PED 236

Query: 372  PKKEDASGTNGS-------TTSNRPSGKLVFGPTRATGLNKNQNETAKETCKA---LSTS 223
             K+++    NG        TT  + SGKLVFG         N    AKET K     +  
Sbjct: 237  TKQQEKPTENGKDDEKLSVTTPRQISGKLVFG--------SNSKSAAKETAKVDDPKNIV 288

Query: 222  QDATKPTDEPKFQAFSGKKYSL 157
            Q+++  +DE KF+ F+GKKYSL
Sbjct: 289  QESSTKSDEAKFKVFTGKKYSL 310