BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00019381
         (1376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   534   e-149
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   530   e-148
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   529   e-148
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   527   e-147
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II su...   526   e-147

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  534 bits (1375), Expect = e-149
 Identities = 270/316 (85%), Positives = 296/316 (93%)
 Frame = -3

Query: 1209 ASYQRFPSIKMREVKGDYCKFELRNTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 1030
            ASYQRFP IK+RE+K DYCKFELR+TDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLN
Sbjct: 4    ASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLN 63

Query: 1029 DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEYYLRVKCHGDQTLDVTSK 850
            DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQC+YCSVE++LR KC  DQTLDVTSK
Sbjct: 64   DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSK 123

Query: 849  DLLSSDPSVRPVDFADPSAGIDSTDTRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 670
            DL SSD +V PVDF+D S+G DS++ RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA
Sbjct: 124  DLYSSDHTVVPVDFSD-SSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 182

Query: 669  ATVTFMYEPEIYINDALMDTLTPAEKRSLVESSPTKVFEYDETTQQVLVVDPEAYTYDEE 490
            ATVTFMYEP+I+IN+ LM++L+  EK+S VESSPTKVF+ D  TQQV+VVDPEAYTYDEE
Sbjct: 183  ATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEE 242

Query: 489  VIKKAEAMGKPGVIEIHAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTV 310
            VIKKAE+MGKPG++ I AKEDSFIFTVESTGAIKASQLVLNAI++LKQKLDAVRLSEDTV
Sbjct: 243  VIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTV 302

Query: 309  EADDQFGELGAHMRGG 262
            EADDQFGELGAHMRGG
Sbjct: 303  EADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  530 bits (1365), Expect = e-148
 Identities = 269/315 (85%), Positives = 293/315 (93%)
 Frame = -3

Query: 1206 SYQRFPSIKMREVKGDYCKFELRNTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 1027
            SYQRFP IK+REVK DY KFELR TDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLND
Sbjct: 5    SYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64

Query: 1026 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEYYLRVKCHGDQTLDVTSKD 847
            EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVE++LR KC  D+TLDVTSKD
Sbjct: 65   EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKD 124

Query: 846  LLSSDPSVRPVDFADPSAGIDSTDTRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 667
            L+SSD +V PVDF+D S+G DS D +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA
Sbjct: 125  LISSDHTVVPVDFSD-SSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 183

Query: 666  TVTFMYEPEIYINDALMDTLTPAEKRSLVESSPTKVFEYDETTQQVLVVDPEAYTYDEEV 487
            TVTFMYEPEI+IN+ LM++LT  EK S VESSPTKVF+ D ++QQV+V D EAYTYD+EV
Sbjct: 184  TVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEV 243

Query: 486  IKKAEAMGKPGVIEIHAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE 307
            +KKAEAMGKPG++EI+AKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE
Sbjct: 244  LKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE 303

Query: 306  ADDQFGELGAHMRGG 262
            ADDQFGELGAHMRGG
Sbjct: 304  ADDQFGELGAHMRGG 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  529 bits (1362), Expect = e-148
 Identities = 268/315 (85%), Positives = 293/315 (93%)
 Frame = -3

Query: 1206 SYQRFPSIKMREVKGDYCKFELRNTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 1027
            SYQRFP IK+REVK DY KFELR TDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLND
Sbjct: 5    SYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64

Query: 1026 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEYYLRVKCHGDQTLDVTSKD 847
            EFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVE++LR KC  D+TLDVTSKD
Sbjct: 65   EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKD 124

Query: 846  LLSSDPSVRPVDFADPSAGIDSTDTRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 667
            L+SSD +V PVDF+D S+G DS D +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA
Sbjct: 125  LISSDHTVVPVDFSD-SSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 183

Query: 666  TVTFMYEPEIYINDALMDTLTPAEKRSLVESSPTKVFEYDETTQQVLVVDPEAYTYDEEV 487
            TVTFMYEPEI+IN+ LM++LT  EK S VESSPTKVF+ D ++QQV+V D EAYTYD+EV
Sbjct: 184  TVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEV 243

Query: 486  IKKAEAMGKPGVIEIHAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE 307
            +KKAEAMGKPG++EI+AKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE
Sbjct: 244  LKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVE 303

Query: 306  ADDQFGELGAHMRGG 262
            ADDQFGELGAHMRGG
Sbjct: 304  ADDQFGELGAHMRGG 318


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 319

 Score =  527 bits (1357), Expect = e-147
 Identities = 265/320 (82%), Positives = 294/320 (91%)
 Frame = -3

Query: 1221 MDSVASYQRFPSIKMREVKGDYCKFELRNTDASMANALRRVMIAEVPTIAIDLVEIEVNS 1042
            M+   SY R P +K+RE+K DY KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNS
Sbjct: 1    MEGGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 60

Query: 1041 SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEYYLRVKCHGDQTLD 862
            SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVE++LRVKC  DQTLD
Sbjct: 61   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 120

Query: 861  VTSKDLLSSDPSVRPVDFADPSAGIDSTDTRGIIIVKLRRGQELRLRAIARKGIGKDHAK 682
            VTSKDL SSDP+V PVDF+DPSA  DS + RGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121  VTSKDLYSSDPTVSPVDFSDPSA-TDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAK 179

Query: 681  WSPAATVTFMYEPEIYINDALMDTLTPAEKRSLVESSPTKVFEYDETTQQVLVVDPEAYT 502
            WSPAATVTFMYEPEI+IN+ LM+TLT  EKR  V+SSPT+VFE D  TQQV+VVD EAYT
Sbjct: 180  WSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYT 239

Query: 501  YDEEVIKKAEAMGKPGVIEIHAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLS 322
            YD+EV+KKAEAMGKPG++EI A++DSFIFTVESTGA+KASQLVLNAI++LKQKLDAVRLS
Sbjct: 240  YDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLS 299

Query: 321  EDTVEADDQFGELGAHMRGG 262
            EDTVEADDQFGELGAHMRGG
Sbjct: 300  EDTVEADDQFGELGAHMRGG 319


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 320

 Score =  526 bits (1354), Expect = e-147
 Identities = 263/320 (82%), Positives = 292/320 (91%)
 Frame = -3

Query: 1221 MDSVASYQRFPSIKMREVKGDYCKFELRNTDASMANALRRVMIAEVPTIAIDLVEIEVNS 1042
            M+   SY R P +K+RE+K DY KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNS
Sbjct: 1    MEGGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 60

Query: 1041 SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEYYLRVKCHGDQTLD 862
            SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVE++LRVKC  DQTLD
Sbjct: 61   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 120

Query: 861  VTSKDLLSSDPSVRPVDFADPSAGIDSTDTRGIIIVKLRRGQELRLRAIARKGIGKDHAK 682
            VTSKDL SSDP+V PVDF+DPSA     + RGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121  VTSKDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 681  WSPAATVTFMYEPEIYINDALMDTLTPAEKRSLVESSPTKVFEYDETTQQVLVVDPEAYT 502
            WSPAATVTFMYEPEI+IN+ LM+TLT  EKR  V+SSPT+VFE D  TQQV+VVD EAYT
Sbjct: 181  WSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYT 240

Query: 501  YDEEVIKKAEAMGKPGVIEIHAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLS 322
            YD+EV+KKAEAMGKPG++EI A++DSFIFTVESTGA+KASQLVLNAI++LKQKLDAVRLS
Sbjct: 241  YDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLS 300

Query: 321  EDTVEADDQFGELGAHMRGG 262
            EDTVEADDQFGELGAHMRGG
Sbjct: 301  EDTVEADDQFGELGAHMRGG 320