BLASTX nr result
ID: Lithospermum22_contig00019257
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00019257
(1174 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3... 239 e-100
emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera] 239 1e-99
ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2... 240 2e-98
ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|2... 240 2e-98
ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putati... 233 2e-97
>ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
Length = 510
Score = 239 bits (610), Expect(2) = e-100
Identities = 126/191 (65%), Positives = 151/191 (79%), Gaps = 7/191 (3%)
Frame = +1
Query: 385 SFKSLLSSRQLVDYLILDVKRVSCEVDIRGSKYALYDACVTRVSDFGKKYRIFNTRTHLG 564
SFK+LLSSRQLV+Y++LDV+ VS EV++ GSKYAL DA V RVSDFGK IFN RTHLG
Sbjct: 305 SFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFNIRTHLG 364
Query: 565 HLLSRGDHALGYEVHGTN-NCIEL---KNCLFPEVVLIKKSYEEKRQKKSGKPRSWKLKS 732
HLL+ GDHALGY+V+ N N +EL + + PE +LIKKSYEEKRQ+K GKPRSWKLKS
Sbjct: 365 HLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPRSWKLKS 424
Query: 733 LEMEVDDSAKGKDDEERSAEYEQFLRDLEENREMRTNVSLYRNKEYQPSEIA---EGDDV 903
L MEVDDS D E+ + EYE FLRDLEE+ E+R N+SLYRNKEYQPSE+A +G+D+
Sbjct: 425 LNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTDGEDL 484
Query: 904 PYIALEELLDD 936
P + LEELL D
Sbjct: 485 PSVPLEELLAD 495
Score = 152 bits (385), Expect(2) = e-100
Identities = 74/107 (69%), Positives = 87/107 (81%), Gaps = 9/107 (8%)
Frame = +2
Query: 2 GIDFFFADKTHAVKFVKFIAKVTPMRCRHDQQLVS-----NPDNFKFTFSVEISPVCRED 166
GIDFFFA+++H VKFV+FI KVTP R RHD+QLVS N N+K+TFSVEI P+CRED
Sbjct: 196 GIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPICRED 255
Query: 167 LICLPP----SLGNIGPLVICTQVTNTIALLEPHTLRHCFWDSRQYW 295
LICLPP SLGN+GPLVICT+V+N IALL+P TLRHCF D+ QYW
Sbjct: 256 LICLPPKVAVSLGNLGPLVICTKVSNNIALLDPFTLRHCFLDADQYW 302
>emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]
Length = 594
Score = 239 bits (610), Expect(2) = 1e-99
Identities = 126/191 (65%), Positives = 151/191 (79%), Gaps = 7/191 (3%)
Frame = +1
Query: 385 SFKSLLSSRQLVDYLILDVKRVSCEVDIRGSKYALYDACVTRVSDFGKKYRIFNTRTHLG 564
SFK+LLSSRQLV+Y++LDV+ VS EV++ GSKYAL DA V RVSDFGK IFN RTHLG
Sbjct: 305 SFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFNIRTHLG 364
Query: 565 HLLSRGDHALGYEVHGTN-NCIEL---KNCLFPEVVLIKKSYEEKRQKKSGKPRSWKLKS 732
HLL+ GDHALGY+V+ N N +EL + + PE +LIKKSYEEKRQ+K GKPRSWKLKS
Sbjct: 365 HLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPRSWKLKS 424
Query: 733 LEMEVDDSAKGKDDEERSAEYEQFLRDLEENREMRTNVSLYRNKEYQPSEIA---EGDDV 903
L MEVDDS D E+ + EYE FLRDLEE+ E+R N+SLYRNKEYQPSE+A +G+D+
Sbjct: 425 LNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTDGEDL 484
Query: 904 PYIALEELLDD 936
P + LEELL D
Sbjct: 485 PSVPLEELLAD 495
Score = 151 bits (382), Expect(2) = 1e-99
Identities = 73/107 (68%), Positives = 87/107 (81%), Gaps = 9/107 (8%)
Frame = +2
Query: 2 GIDFFFADKTHAVKFVKFIAKVTPMRCRHDQQLVS-----NPDNFKFTFSVEISPVCRED 166
GIDFFFA+++H VKFV+FI KVTP R RHD+QLVS N N+K+TFSVEI P+CRED
Sbjct: 196 GIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPICRED 255
Query: 167 LICLPP----SLGNIGPLVICTQVTNTIALLEPHTLRHCFWDSRQYW 295
LICLPP SLGN+GP+VICT+V+N IALL+P TLRHCF D+ QYW
Sbjct: 256 LICLPPKVAVSLGNLGPVVICTKVSNNIALLDPFTLRHCFLDADQYW 302
>ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1|
predicted protein [Populus trichocarpa]
Length = 511
Score = 240 bits (612), Expect(2) = 2e-98
Identities = 124/190 (65%), Positives = 151/190 (79%), Gaps = 7/190 (3%)
Frame = +1
Query: 388 FKSLLSSRQLVDYLILDVKRVSCEVDIRGSKYALYDACVTRVSDFGKKYRIFNTRTHLGH 567
FKSLL+SRQLV+Y++ DV VS EV+I GS+YAL DA V R+SDFGK +FN +THLGH
Sbjct: 307 FKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMFNIKTHLGH 366
Query: 568 LLSRGDHALGYEVHGTN-NCIEL---KNCLFPEVVLIKKSYEEKRQKKSGKPRSWKLKSL 735
+L GD+ALGY++HG N N +EL KN + PE +L+KKSYEEKRQ+K GKPRSWKLKSL
Sbjct: 367 ILKPGDYALGYDLHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRSWKLKSL 426
Query: 736 EMEVDDSAKGKDDEERSAEYEQFLRDLEENREMRTNVSLYRNKEYQPSEIA---EGDDVP 906
MEVDD+ D E+ ++EYEQFLRDLEEN E+R NVSLYRNKEYQPSE+A +G+D+P
Sbjct: 427 NMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMASMTDGEDIP 486
Query: 907 YIALEELLDD 936
I LEELL D
Sbjct: 487 SIPLEELLAD 496
Score = 147 bits (370), Expect(2) = 2e-98
Identities = 70/107 (65%), Positives = 87/107 (81%), Gaps = 9/107 (8%)
Frame = +2
Query: 2 GIDFFFADKTHAVKFVKFIAKVTPMRCRHDQQLVS-----NPDNFKFTFSVEISPVCRED 166
GIDFFFA+++H VKFV F+ KV P++ R+D+QLVS N N+K TFSVEISP+CRED
Sbjct: 197 GIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYNYKHTFSVEISPICRED 256
Query: 167 LICLPP----SLGNIGPLVICTQVTNTIALLEPHTLRHCFWDSRQYW 295
L+CLPP SLGN+GPLVIC++VTN+IALL+P TLRHCF D+ QYW
Sbjct: 257 LVCLPPRVAVSLGNLGPLVICSKVTNSIALLDPFTLRHCFLDADQYW 303
>ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|222848846|gb|EEE86393.1|
predicted protein [Populus trichocarpa]
Length = 511
Score = 240 bits (612), Expect(2) = 2e-98
Identities = 124/190 (65%), Positives = 151/190 (79%), Gaps = 7/190 (3%)
Frame = +1
Query: 388 FKSLLSSRQLVDYLILDVKRVSCEVDIRGSKYALYDACVTRVSDFGKKYRIFNTRTHLGH 567
FKSLL+SRQLV+Y++ DV VS EV+I GS+YAL DA V R+SDFGK +FN +THLGH
Sbjct: 307 FKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMFNIKTHLGH 366
Query: 568 LLSRGDHALGYEVHGTN-NCIEL---KNCLFPEVVLIKKSYEEKRQKKSGKPRSWKLKSL 735
+L GD+ALGY++HG N N +EL KN + PE +L+KKSYEEKRQ+K GKPRSWKLKSL
Sbjct: 367 ILKPGDYALGYDLHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRSWKLKSL 426
Query: 736 EMEVDDSAKGKDDEERSAEYEQFLRDLEENREMRTNVSLYRNKEYQPSEIA---EGDDVP 906
MEVDD+ D E+ ++EYEQFLRDLEEN E+R NVSLYRNKEYQPSE+A +G+D+P
Sbjct: 427 NMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMASMTDGEDIP 486
Query: 907 YIALEELLDD 936
I LEELL D
Sbjct: 487 SIPLEELLAD 496
Score = 147 bits (370), Expect(2) = 2e-98
Identities = 70/107 (65%), Positives = 87/107 (81%), Gaps = 9/107 (8%)
Frame = +2
Query: 2 GIDFFFADKTHAVKFVKFIAKVTPMRCRHDQQLVS-----NPDNFKFTFSVEISPVCRED 166
GIDFFFA+++H VKFV F+ KV P++ R+D+QLVS N N+K TFSVEISP+CRED
Sbjct: 197 GIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYNYKHTFSVEISPICRED 256
Query: 167 LICLPP----SLGNIGPLVICTQVTNTIALLEPHTLRHCFWDSRQYW 295
L+CLPP SLGN+GPLVIC++VTN+IALL+P TLRHCF D+ QYW
Sbjct: 257 LVCLPPRVAVSLGNLGPLVICSKVTNSIALLDPFTLRHCFLDADQYW 303
>ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
gi|223526598|gb|EEF28848.1| nonsense-mediated mRNA decay
protein, putative [Ricinus communis]
Length = 511
Score = 233 bits (594), Expect(2) = 2e-97
Identities = 124/191 (64%), Positives = 147/191 (76%), Gaps = 7/191 (3%)
Frame = +1
Query: 385 SFKSLLSSRQLVDYLILDVKRVSCEVDIRGSKYALYDACVTRVSDFGKKYRIFNTRTHLG 564
SFKSLL+SRQLV+Y++LDV +S EV+I SKYA+ + V R+SDFGK IF +THLG
Sbjct: 306 SFKSLLTSRQLVEYIVLDVDIISPEVNIGSSKYAMAEVQVARLSDFGKNDTIFFIKTHLG 365
Query: 565 HLLSRGDHALGYEVHGTN-NCIEL---KNCLFPEVVLIKKSYEEKRQKKSGKPRSWKLKS 732
H+L GD ALGY+++G N N IEL K + PE +LIKKSYEEKRQ+K GKPR+WKLKS
Sbjct: 366 HILKPGDQALGYDLYGANSNDIELDKYKGLVLPEAILIKKSYEEKRQRKRGKPRAWKLKS 425
Query: 733 LEMEVDDSAKGKDDEERSAEYEQFLRDLEENREMRTNVSLYRNKEYQPSEIA---EGDDV 903
LEMEVDDS D E+ EYEQFLRDLEEN E+R NVSLYRNKEYQPSE+A +G+DV
Sbjct: 426 LEMEVDDSRGRNDQEKMDTEYEQFLRDLEENAELRFNVSLYRNKEYQPSEMASVTDGEDV 485
Query: 904 PYIALEELLDD 936
P I LEELL D
Sbjct: 486 PSIPLEELLAD 496
Score = 150 bits (379), Expect(2) = 2e-97
Identities = 71/107 (66%), Positives = 87/107 (81%), Gaps = 9/107 (8%)
Frame = +2
Query: 2 GIDFFFADKTHAVKFVKFIAKVTPMRCRHDQQLVS-----NPDNFKFTFSVEISPVCRED 166
GIDFFF +++H VKFV+F+ KV P+R RHD+QLVS N N+K+TFSVEISP+CRED
Sbjct: 197 GIDFFFGNRSHGVKFVEFLGKVAPVRSRHDKQLVSHDPKSNNYNYKYTFSVEISPICRED 256
Query: 167 LICLPP----SLGNIGPLVICTQVTNTIALLEPHTLRHCFWDSRQYW 295
L+CLPP SLGN+GPLVICT+VTN+IALL+P TLRHC+ D QYW
Sbjct: 257 LVCLPPKVAVSLGNLGPLVICTKVTNSIALLDPLTLRHCYLDGDQYW 303