BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00018983
         (1379 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-li...   483   e-134
emb|CBI32318.3| unnamed protein product [Vitis vinifera]              477   e-132
ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-li...   466   e-129
ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago t...   465   e-128
ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-li...   457   e-126

>ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-like [Vitis vinifera]
          Length = 330

 Score =  483 bits (1244), Expect = e-134
 Identities = 240/314 (76%), Positives = 273/314 (86%), Gaps = 2/314 (0%)
 Frame = +3

Query: 75   MRGIQLSFNKTQKLRLDKALEQLEYFSSKLNSNAIVTVSDTIPVNHEDGVLKGHGTMELE 254
            MRG QLS N+TQKLRL +ALEQLE  SSK NSNA V V+DTIPVN+EDGVLKGHGT++L+
Sbjct: 1    MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 255  GEVVATLCGVVERVNKLVYVRPFRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLM 434
            GEVVATLCGVVERVNKLVY+R  RARYKPE GDIIVGRV E+APKRWRL+INFSQDAVLM
Sbjct: 61   GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 435  LSSMNLPDGIQRRRTAVDELNMRTIFEEYDVICAEVRGFQHDGCLHLQARSQKYGKLERG 614
            LSSMNLPDGIQRRRTAVDELNMR+IFEE D++CAEVRGFQHDG LHLQARSQKYGKLERG
Sbjct: 121  LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 615  QLLTISPYLVKRQKQHFHHIDQYGIDLILGCNGFIWVGEHVEVKDDMIEDQTNKSEQQNN 794
            Q+LTISPYLVKR+KQH H+++++G+DLILGCNGFIWVGEHVE K  +IEDQT+K+EQ N 
Sbjct: 181  QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNT 240

Query: 795  KLSG--LASHQNQEHNYTPLELRQYICRAANAVRVLSTLGFMITVDKIMDAVEMSTSKNL 968
            K S     S + QE  YT LE RQ ICR ANAVRVL+ LGF +TV+ I + V +S+S NL
Sbjct: 241  KSSSSTFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLNL 300

Query: 969  NIHEMLGAEFYVLV 1010
            +IHEMLG+EFYVLV
Sbjct: 301  DIHEMLGSEFYVLV 314


>emb|CBI32318.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score =  477 bits (1227), Expect = e-132
 Identities = 237/312 (75%), Positives = 270/312 (86%)
 Frame = +3

Query: 75   MRGIQLSFNKTQKLRLDKALEQLEYFSSKLNSNAIVTVSDTIPVNHEDGVLKGHGTMELE 254
            MRG QLS N+TQKLRL +ALEQLE  SSK NSNA V V+DTIPVN+EDGVLKGHGT++L+
Sbjct: 1    MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 255  GEVVATLCGVVERVNKLVYVRPFRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLM 434
            GEVVATLCGVVERVNKLVY+R  RARYKPE GDIIVGRV E+APKRWRL+INFSQDAVLM
Sbjct: 61   GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 435  LSSMNLPDGIQRRRTAVDELNMRTIFEEYDVICAEVRGFQHDGCLHLQARSQKYGKLERG 614
            LSSMNLPDGIQRRRTAVDELNMR+IFEE D++CAEVRGFQHDG LHLQARSQKYGKLERG
Sbjct: 121  LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 615  QLLTISPYLVKRQKQHFHHIDQYGIDLILGCNGFIWVGEHVEVKDDMIEDQTNKSEQQNN 794
            Q+LTISPYLVKR+KQH H+++++G+DLILGCNGFIWVGEHVE K  +IEDQT+K+EQ N 
Sbjct: 181  QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNT 240

Query: 795  KLSGLASHQNQEHNYTPLELRQYICRAANAVRVLSTLGFMITVDKIMDAVEMSTSKNLNI 974
            K S        +  YT LE RQ ICR ANAVRVL+ LGF +TV+ I + V +S+S NL+I
Sbjct: 241  KSS--------KRTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLNLDI 292

Query: 975  HEMLGAEFYVLV 1010
            HEMLG+EFYVLV
Sbjct: 293  HEMLGSEFYVLV 304


>ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-like [Cucumis sativus]
          Length = 327

 Score =  466 bits (1198), Expect = e-129
 Identities = 231/313 (73%), Positives = 273/313 (87%), Gaps = 2/313 (0%)
 Frame = +3

Query: 75   MRGIQLSFNKTQKLRLDKALEQLEYFSSKLNSNAIVTVSDTIPVNHEDGVLKGHGTMELE 254
            M+G+QLS N TQK+RL++A E+L+  SSK NS+A V V+DTIP+N+EDGVLKGHGT++L 
Sbjct: 1    MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 255  GEVVATLCGVVERVNKLVYVRPFRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLM 434
            GEVVA++CGVVERVNKL+YVR  RARYKPE+GDI+VGRV EVAPKRWRL+IN+ QDAVLM
Sbjct: 61   GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 435  LSSMNLPDGIQRRRTAVDELNMRTIFEEYDVICAEVRGFQHDGCLHLQARSQKYGKLERG 614
            LSSMNLPDGIQRRRTAVDELNMR+IFEE DVICAEVRG QHDG LHLQARSQKYGKLERG
Sbjct: 121  LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 179

Query: 615  QLLTISPYLVKRQKQHFHHIDQYGIDLILGCNGFIWVGEHVEVK--DDMIEDQTNKSEQQ 788
            QLLT+SPYL+KR+KQHFHH++QYGIDLILGCNGFIW+GEHV+ K  D MIEDQ +K EQ+
Sbjct: 180  QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 239

Query: 789  NNKLSGLASHQNQEHNYTPLELRQYICRAANAVRVLSTLGFMITVDKIMDAVEMSTSKNL 968
             +K  G   +Q QE  YTPLE RQ ICR ANA+RVLSTLGF++TV+ IM+ V +S S N+
Sbjct: 240  GSKFEGTFGNQVQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNI 298

Query: 969  NIHEMLGAEFYVL 1007
            ++HEMLG+EF VL
Sbjct: 299  DVHEMLGSEFCVL 311


>ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
            gi|217074186|gb|ACJ85453.1| unknown [Medicago truncatula]
            gi|355510788|gb|AES91930.1| Exosome complex exonuclease
            RRP4 [Medicago truncatula] gi|388516977|gb|AFK46550.1|
            unknown [Medicago truncatula]
          Length = 327

 Score =  465 bits (1196), Expect = e-128
 Identities = 232/315 (73%), Positives = 272/315 (86%), Gaps = 3/315 (0%)
 Frame = +3

Query: 75   MRGIQLSFNKTQKLRLDKALEQLEYFSSKLNSNAIVTVSDTIPVNHEDGVLKGHGTMELE 254
            MRGI L  ++TQKLRL KALE LE  SSK+NS++ VT++D+IPVNHEDGVLKGHGT +L+
Sbjct: 1    MRGIHLQLSQTQKLRLQKALEHLESLSSKVNSDSSVTIADSIPVNHEDGVLKGHGTADLD 60

Query: 255  GEVVATLCGVVERVNKLVYVRPFRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLM 434
            GEVVATLCGVVERVNKLVYVR  R+RYKPE+GDI++GRVIEVA KRWRL+IN+SQ+A LM
Sbjct: 61   GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLM 120

Query: 435  LSSMNLPDGIQRRRTAVDELNMRTIFEEYDVICAEVRGFQHDGCLHLQARSQKYGKLERG 614
            LS+MN+PDG+QRRRTA+DELNMR IFEE DVICAEVRGFQHDG LHLQARSQKYGKL  G
Sbjct: 121  LSAMNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDG-LHLQARSQKYGKLSTG 179

Query: 615  QLLTISPYLVKRQKQHFHHIDQYGIDLILGCNGFIWVGEHVEVKDDMIEDQTNKSEQQ-- 788
            QLLT++PYLVKRQKQHFHH++QYGIDLI+GCNGFIWVGEHVEV+DDM+EDQ N+S+ Q  
Sbjct: 180  QLLTVTPYLVKRQKQHFHHLEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVL 239

Query: 789  -NNKLSGLASHQNQEHNYTPLELRQYICRAANAVRVLSTLGFMITVDKIMDAVEMSTSKN 965
              NK S   S + QE  YT LE R+YICRAANAVR LSTLGF+IT + I   +++S S N
Sbjct: 240  TPNKNS--VSLEEQEKKYTALETRKYICRAANAVRGLSTLGFIITSEIIKGVIDLSLSAN 297

Query: 966  LNIHEMLGAEFYVLV 1010
            L+IH+MLG+EF VLV
Sbjct: 298  LDIHDMLGSEFCVLV 312


>ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-like [Glycine max]
          Length = 327

 Score =  457 bits (1177), Expect = e-126
 Identities = 230/315 (73%), Positives = 270/315 (85%), Gaps = 3/315 (0%)
 Frame = +3

Query: 75   MRGIQLSFNKTQKLRLDKALEQLEYFSSKLNSNAIVTVSDTIPVNHEDGVLKGHGTMELE 254
            MR IQL  ++TQK+RL KALEQLE  S+K+NS+A V ++D+I VNHEDGVLKGHGT +L 
Sbjct: 1    MREIQLPLSQTQKVRLQKALEQLESLSTKVNSDASVIIADSIHVNHEDGVLKGHGTADLN 60

Query: 255  GEVVATLCGVVERVNKLVYVRPFRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLM 434
            GEVVATLCGVVERVNKLVYVR  R+RYKPE+GDI++GRV+EVA KRWRLEIN++QDAVL+
Sbjct: 61   GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYNQDAVLL 120

Query: 435  LSSMNLPDGIQRRRTAVDELNMRTIFEEYDVICAEVRGFQHDGCLHLQARSQKYGKLERG 614
            LSSMN+PDG+QRRRTAVDELNMR IFEE DV+CAEVRGFQHDG LHLQARS+KYGKL RG
Sbjct: 121  LSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRG 179

Query: 615  QLLTISPYLVKRQKQHFHHIDQYGIDLILGCNGFIWVGEHVEVKDDMIEDQTNKSEQQ-- 788
            QLLT+ PYLVKRQKQHFHH++++GIDLILGCNGFIWVGEHVE KDDMIEDQ ++S+ Q  
Sbjct: 180  QLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVL 239

Query: 789  -NNKLSGLASHQNQEHNYTPLELRQYICRAANAVRVLSTLGFMITVDKIMDAVEMSTSKN 965
              NK     S + QE NYT LE R+YI RAANAVRVLSTLGF IT++ I   +++S S N
Sbjct: 240  FPNK--NCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMN 297

Query: 966  LNIHEMLGAEFYVLV 1010
            L+IH+MLG+EF VLV
Sbjct: 298  LDIHDMLGSEFCVLV 312