BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00018907
         (438 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]          93   2e-17
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...    92   3e-17
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...    91   1e-16
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]            90   2e-16
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...    89   3e-16

>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 48/133 (36%), Positives = 78/133 (58%), Gaps = 10/133 (7%)
 Frame = -1

Query: 369 DKPTQRILLTGPPSNGLYSFQPAAYSA-------SASSKVWHHRLCHPHSRVLQQVLSHH 211
           D  TQ+++  GP +NGLY  + + + A       +AS + WHHRL H +S++LQQ+L+  
Sbjct: 418 DLTTQKVVSKGPRNNGLYMLENSEFVALYSNRQCAASMETWHHRLGHSNSKILQQLLTRK 477

Query: 210 RLGVFSKF---VCFSCPLGKACLQSFPTSPNKSSRVLDSIITDV*GPTPKLSYEGMRFYV 40
            + V       VC  C +GK+    F +S  ++ + LD +  D+ GP+P +S +G ++Y 
Sbjct: 478 EIQVNKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQGFKYYA 537

Query: 39  LYVDDFSCFIWLF 1
           ++VDDFS F W F
Sbjct: 538 VFVDDFSRFSWFF 550


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 10/133 (7%)
 Frame = -1

Query: 369 DKPTQRILLTGPPSNGLYSFQP--------AAYSASASSKVWHHRLCHPHSRVLQQVLSH 214
           DK T+++L+ G   +GLY  +         +    SAS +VWH RL HPH +VLQQ++  
Sbjct: 426 DKATKKLLIMGSTCDGLYCLKDDSQFKAFFSTRQQSASDEVWHRRLGHPHPQVLQQLVKT 485

Query: 213 HRLGV--FSKFVCFSCPLGKACLQSFPTSPNKSSRVLDSIITDV*GPTPKLSYEGMRFYV 40
           + + +   SK +C +C LGK+    F +S   S+R L+ +  D+ GP+P  S +G R+Y 
Sbjct: 486 NSISINKTSKSLCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLWGPSPITSVQGFRYYA 545

Query: 39  LYVDDFSCFIWLF 1
           +++D +S F W++
Sbjct: 546 VFIDHYSRFSWIY 558


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
           putative protein [Arabidopsis thaliana]
          Length = 1415

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 9/136 (6%)
 Frame = -1

Query: 381 VTEQDKPTQRILLTGPPSNGLYSFQPAAYSASASSK-------VWHHRLCHPHSRVLQQV 223
           V  +DK T+++L  G   N LY  +   + A  SS+       VWH RL HP+  VLQQ+
Sbjct: 383 VIVKDKLTKQLLTKGTRHNDLYLLENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQL 442

Query: 222 LSHHRLGVF--SKFVCFSCPLGKACLQSFPTSPNKSSRVLDSIITDV*GPTPKLSYEGMR 49
           L +  + +   S  +C +C +GK C   F +S   SSR+L+ +  D+ GP P +S +G R
Sbjct: 443 LRNKAIVISKTSHSLCDACQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVSSQGFR 502

Query: 48  FYVLYVDDFSCFIWLF 1
           +YV+++D++S F W +
Sbjct: 503 YYVIFIDNYSRFTWFY 518


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 11/134 (8%)
 Frame = -1

Query: 369 DKPTQRILLTGPPSNGLYSFQPAAYSA-------SASSKVWHHRLCHPHSRVLQQVLSHH 211
           D  TQ+++  GP SNGLY  +   + A       +AS ++WHHRL H +SR+LQQ+ S  
Sbjct: 419 DINTQKVVSKGPRSNGLYVLENQEFVAFYSNRQCAASEEIWHHRLGHSNSRILQQLKSSK 478

Query: 210 RLGVFSKF----VCFSCPLGKACLQSFPTSPNKSSRVLDSIITDV*GPTPKLSYEGMRFY 43
            +  F+K     VC  C +GK+    F +S ++   +L  I  D+ GP+P +S +G ++Y
Sbjct: 479 EIS-FNKSRMSPVCEPCQMGKSSKLQFFSSNSRELDLLGRIHCDLWGPSPVVSKQGFKYY 537

Query: 42  VLYVDDFSCFIWLF 1
           V++VDD+S + W +
Sbjct: 538 VVFVDDYSRYSWFY 551


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 51/133 (38%), Positives = 77/133 (57%), Gaps = 10/133 (7%)
 Frame = -1

Query: 369 DKPTQRILLTGPPSNGLYSFQP----AAYSA---SASSKVWHHRLCHPHSRVLQQVLSHH 211
           DK T+++L+ G   +GLYS +       YS    SASS+VWH RL H ++ VL Q+ S  
Sbjct: 420 DKATKKLLVMGRNRDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQLASSK 479

Query: 210 RLGVFSKFV---CFSCPLGKACLQSFPTSPNKSSRVLDSIITDV*GPTPKLSYEGMRFYV 40
            + + +K V   C +C LGK+    F  S   +SR L+ I  D+ GP+P  S +G R+YV
Sbjct: 480 SIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYV 539

Query: 39  LYVDDFSCFIWLF 1
           +++D +S F W +
Sbjct: 540 VFIDHYSRFTWFY 552