BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00018591
         (1203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l...   454   e-125
gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like pr...   448   e-123
gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [S...   447   e-123
ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...   447   e-123
emb|CBI29839.3| unnamed protein product [Vitis vinifera]              445   e-123

>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
          Length = 303

 Score =  454 bits (1169), Expect = e-125
 Identities = 227/295 (76%), Positives = 264/295 (89%), Gaps = 3/295 (1%)
 Frame = -3

Query: 991 DLSSEMEVEAFRRLFPLKFHERHLVESIRSDGRQLKKARDTSLALGAVSSANGSALAKVG 812
           DLSSEMEV+AFRRLFPL++HER L++SIR D R L +ARDTSLALGAV+SA+GSALAK+G
Sbjct: 9   DLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSALAKIG 68

Query: 811 CTTMLAAIKMEVMTPTTESPDEGSIAVDFHMPPICSPNVRPGRPAETAPVVAKQLTDIIL 632
           CTTMLAA+KMEVMTP  ESPDEGSIA++F+MPPICSP VRPGRPAE APVV+KQL+D IL
Sbjct: 69  CTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTIL 128

Query: 631 SSGLVDFKELSLVSGKAAWMVYLDIYCLDADGSLFDAALLSAVGAFAHLQIPIVSLNDDG 452
           SSG+++ KELSLVSGKAAWM YLDIYCLDADGSLFDAALL+AV AF+HL+IP+VSLN++G
Sbjct: 129 SSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEG 188

Query: 451 RVVLVSDDK---KLEREPVNMDKRKLALKNKPFSQTCILHKNYILVDPTAEEEAIMETMV 281
           RVV+VS++    K E+EPVN  KRKL L + PFS TCILHKNYIL DPTAEEE+IMET+V
Sbjct: 189 RVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLV 248

Query: 280 TAVLDSSGLLVSLYKPGGPVLAHTSVLKDCIELTRQRIKELEKILNEALSDMEVD 116
           T VLDSSG LVSLYKPGGPVLA+ S ++DCI LTRQR+KEL+ ILNEA+SDMEVD
Sbjct: 249 TVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEVD 303


>gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
            tuberosum]
          Length = 314

 Score =  448 bits (1153), Expect = e-123
 Identities = 226/302 (74%), Positives = 261/302 (86%), Gaps = 4/302 (1%)
 Frame = -3

Query: 1012 MEAGNGT-DLSSEMEVEAFRRLFPLKFHERHLVESIRSDGRQLKKARDTSLALGAVSSAN 836
            M A NG+ DLSSEMEV+AFRRLFPL++HE HL++S+R D R+L  ARDT+LALGAV+SA+
Sbjct: 1    MAAANGSSDLSSEMEVDAFRRLFPLRYHEHHLLKSVRPDARKLGSARDTTLALGAVASAD 60

Query: 835  GSALAKVGCTTMLAAIKMEVMTPTTESPDEGSIAVDFHMPPICSPNVRPGRPAETAPVVA 656
            GSALAK+G TTMLAAIKMEVMTPT E PDEGSIA++FHMPPICSP VRPGRPAE A V++
Sbjct: 61   GSALAKIGSTTMLAAIKMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVIS 120

Query: 655  KQLTDIILSSGLVDFKELSLVSGKAAWMVYLDIYCLDADGSLFDAALLSAVGAFAHLQIP 476
            KQL+D ILSSG++D KEL LV GKAAWM YLDIYCLDADG+LFD ALLSAV AF+HL IP
Sbjct: 121  KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLNIP 180

Query: 475  IVSLNDDGRVVLVSDDK---KLEREPVNMDKRKLALKNKPFSQTCILHKNYILVDPTAEE 305
            +VSLNDDGR+VLVS+D    KLE+EPVN +KRKL L + PFS TCILHKNYIL DPTAEE
Sbjct: 181  VVSLNDDGRIVLVSEDTVRLKLEKEPVNTEKRKLKLNSLPFSLTCILHKNYILADPTAEE 240

Query: 304  EAIMETMVTAVLDSSGLLVSLYKPGGPVLAHTSVLKDCIELTRQRIKELEKILNEALSDM 125
            E IMET+VT VLDSS  LVSL KPGGPVL+HTSV++DCI L R+R KEL+ +LNEA+SDM
Sbjct: 241  EPIMETIVTVVLDSSHQLVSLNKPGGPVLSHTSVIQDCIGLARRRAKELQSVLNEAISDM 300

Query: 124  EV 119
            EV
Sbjct: 301  EV 302


>gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
          Length = 303

 Score =  447 bits (1149), Expect = e-123
 Identities = 221/303 (72%), Positives = 262/303 (86%), Gaps = 4/303 (1%)
 Frame = -3

Query: 1012 MEAGNGT-DLSSEMEVEAFRRLFPLKFHERHLVESIRSDGRQLKKARDTSLALGAVSSAN 836
            M A NG+ DL SEMEV+AFRRLFPL++HE+HL++S+R D R+L  ARDT+LALGAV+SA 
Sbjct: 1    MAAANGSSDLYSEMEVDAFRRLFPLRYHEQHLLKSVRPDARKLGSARDTTLALGAVASAE 60

Query: 835  GSALAKVGCTTMLAAIKMEVMTPTTESPDEGSIAVDFHMPPICSPNVRPGRPAETAPVVA 656
            GSALAK+G TTMLAAIKME+MTPT E PDEGSIA++FHMPPICSP VRPGRPAE A V++
Sbjct: 61   GSALAKIGSTTMLAAIKMEIMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEVASVIS 120

Query: 655  KQLTDIILSSGLVDFKELSLVSGKAAWMVYLDIYCLDADGSLFDAALLSAVGAFAHLQIP 476
            KQL+D ILSSG++D KEL LV GKAAWM YLDIYCLDADGSLFDAALLS V AF+HL IP
Sbjct: 121  KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGSLFDAALLSTVAAFSHLNIP 180

Query: 475  IVSLNDDGRVVLVSDDK---KLEREPVNMDKRKLALKNKPFSQTCILHKNYILVDPTAEE 305
            +VSLN+DGR+VLVS+D    KLE++PVN +KRKL L + PFS TC+LHKNYIL DPTAEE
Sbjct: 181  VVSLNEDGRIVLVSEDNIQLKLEKQPVNTEKRKLKLNSPPFSLTCLLHKNYILADPTAEE 240

Query: 304  EAIMETMVTAVLDSSGLLVSLYKPGGPVLAHTSVLKDCIELTRQRIKELEKILNEALSDM 125
            E+IMET VT VLDSS  LVSLYKPGGPV AHTSV++DC+ L ++R+KEL+ +LNEA+SDM
Sbjct: 241  ESIMETAVTVVLDSSYQLVSLYKPGGPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDM 300

Query: 124  EVD 116
            EV+
Sbjct: 301  EVE 303


>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
           gi|223528261|gb|EEF30313.1| exosome complex exonuclease
           rrp43, putative [Ricinus communis]
          Length = 303

 Score =  447 bits (1149), Expect = e-123
 Identities = 222/295 (75%), Positives = 258/295 (87%), Gaps = 3/295 (1%)
 Frame = -3

Query: 991 DLSSEMEVEAFRRLFPLKFHERHLVESIRSDGRQLKKARDTSLALGAVSSANGSALAKVG 812
           DLS+EME +AFRRLFPL FHERHL ESIR DGR L +ARDT+LALGAV SA+GSA+AK+G
Sbjct: 9   DLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSADGSAIAKIG 68

Query: 811 CTTMLAAIKMEVMTPTTESPDEGSIAVDFHMPPICSPNVRPGRPAETAPVVAKQLTDIIL 632
            TTM+AAIKMEVMTP++ESPDEG IA+DFHMPPICSP VRPGRPAE APVV+KQL+D I+
Sbjct: 69  STTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLSDTIM 128

Query: 631 SSGLVDFKELSLVSGKAAWMVYLDIYCLDADGSLFDAALLSAVGAFAHLQIPIVSLNDDG 452
           SS ++D KELSLVSGKAAWM YLDIYCLDADGSLFDAAL SAV AF +LQIPIVSLNDDG
Sbjct: 129 SSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIPIVSLNDDG 188

Query: 451 RVVLVSDDK---KLEREPVNMDKRKLALKNKPFSQTCILHKNYILVDPTAEEEAIMETMV 281
           +VV+VSD+    K E+E VN +KRKL L++ PFS TC+LHKNYIL DPTAEEE+IMET+V
Sbjct: 189 KVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEEESIMETLV 248

Query: 280 TAVLDSSGLLVSLYKPGGPVLAHTSVLKDCIELTRQRIKELEKILNEALSDMEVD 116
           T VLDSS  LVS YKPGGPVLA+TS ++DC+ LTRQR+KEL+ IL+EALS M++D
Sbjct: 249 TVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGMQID 303


>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score =  445 bits (1145), Expect = e-123
 Identities = 226/303 (74%), Positives = 263/303 (86%), Gaps = 11/303 (3%)
 Frame = -3

Query: 991 DLSSEMEVEAFRRLFPLKFHERHLVESIRSDGRQLKKARDTSLALGAVSSANGSALAKVG 812
           DLSSEMEV+AFRRLFPL++HER L++SIR D R L +ARDTSLALGAV+SA+GSALAK+G
Sbjct: 9   DLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSALAKIG 68

Query: 811 CTTMLAAIKMEVMTPTTESPDEGSIAVDFHMPPICSPNVRPGRPAETAPVVAKQLTDIIL 632
           CTTMLAA+KMEVMTP  ESPDEGSIA++F+MPPICSP VRPGRPAE APVV+KQL+D IL
Sbjct: 69  CTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTIL 128

Query: 631 S--------SGLVDFKELSLVSGKAAWMVYLDIYCLDADGSLFDAALLSAVGAFAHLQIP 476
                    SG+++ KELSLVSGKAAWM YLDIYCLDADGSLFDAALL+AV AF+HL+IP
Sbjct: 129 RHVNVVTSFSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIP 188

Query: 475 IVSLNDDGRVVLVSDDK---KLEREPVNMDKRKLALKNKPFSQTCILHKNYILVDPTAEE 305
           +VSLN++GRVV+VS++    K E+EPVN  KRKL L + PFS TCILHKNYIL DPTAEE
Sbjct: 189 VVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEE 248

Query: 304 EAIMETMVTAVLDSSGLLVSLYKPGGPVLAHTSVLKDCIELTRQRIKELEKILNEALSDM 125
           E+IMET+VT VLDSSG LVSLYKPGGPVLA+ S ++DCI LTRQR+KEL+ ILNEA+SDM
Sbjct: 249 ESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDM 308

Query: 124 EVD 116
           EVD
Sbjct: 309 EVD 311