BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00018590
         (1059 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l...   443   e-122
ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...   435   e-120
emb|CBI29839.3| unnamed protein product [Vitis vinifera]              434   e-119
gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like pr...   427   e-117
ref|XP_002308947.1| predicted protein [Populus trichocarpa] gi|2...   425   e-116

>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
          Length = 303

 Score =  443 bits (1139), Expect = e-122
 Identities = 224/296 (75%), Positives = 257/296 (86%), Gaps = 3/296 (1%)
 Frame = +1

Query: 85  GDLSSEMEVEAFRRLFPLRFHERHLVESIRSDGRQLKKARDTSLALGAVSSANGSALAKV 264
           GDLSSEMEV+AFRRLFPLR+HER L++SIR D R L +ARDTSLALGAV+SA+GSALAK+
Sbjct: 8   GDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSALAKI 67

Query: 265 GCTTMLAAIKMEVMTPTAESPDEGSIAVDFHMPPICSPHVRPGRPAETAPVVAKQLSDTI 444
           GCTTMLAA+KMEVMTP  ESPDEGSIA++F+MPPICSP VRPGRPAE APVV+KQLSDTI
Sbjct: 68  GCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTI 127

Query: 445 LSSGLVDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLSAVGAFSHLQIPIVSLNDD 624
           LSSG+++LKELSLVSGKAAWMAYLDIYCLDADGSLFDAALL+AV AFSHL+IP+VSLN++
Sbjct: 128 LSSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEE 187

Query: 625 GRVVLISDDK---KSEREPVNKDRRKLTLKNKPFSQTCILHKNYILLDPTAEEEAIMETM 795
           GRVV++S++    KSE+EPVNK +RKLTL + PFS TCILHKNYIL DPTAEEE+IMET+
Sbjct: 188 GRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETL 247

Query: 796 XXXXXXXXXXXXXXYKPGGPVLARTSVLQDCIELTRQRRKELEKILNEALSDMEVD 963
                         YKPGGPVLA  S +QDCI LTRQR KEL+ ILNEA+SDMEVD
Sbjct: 248 VTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEVD 303


>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
           gi|223528261|gb|EEF30313.1| exosome complex exonuclease
           rrp43, putative [Ricinus communis]
          Length = 303

 Score =  435 bits (1119), Expect = e-120
 Identities = 218/296 (73%), Positives = 253/296 (85%), Gaps = 3/296 (1%)
 Frame = +1

Query: 85  GDLSSEMEVEAFRRLFPLRFHERHLVESIRSDGRQLKKARDTSLALGAVSSANGSALAKV 264
           GDLS+EME +AFRRLFPL FHERHL ESIR DGR L +ARDT+LALGAV SA+GSA+AK+
Sbjct: 8   GDLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSADGSAIAKI 67

Query: 265 GCTTMLAAIKMEVMTPTAESPDEGSIAVDFHMPPICSPHVRPGRPAETAPVVAKQLSDTI 444
           G TTM+AAIKMEVMTP++ESPDEG IA+DFHMPPICSP VRPGRPAE APVV+KQLSDTI
Sbjct: 68  GSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLSDTI 127

Query: 445 LSSGLVDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLSAVGAFSHLQIPIVSLNDD 624
           +SS ++DLKELSLVSGKAAWMAYLDIYCLDADGSLFDAAL SAV AF++LQIPIVSLNDD
Sbjct: 128 MSSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIPIVSLNDD 187

Query: 625 GRVVLISDDK---KSEREPVNKDRRKLTLKNKPFSQTCILHKNYILLDPTAEEEAIMETM 795
           G+VV++SD+    K E+E VNK++RKLTL++ PFS TC+LHKNYIL DPTAEEE+IMET+
Sbjct: 188 GKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEEESIMETL 247

Query: 796 XXXXXXXXXXXXXXYKPGGPVLARTSVLQDCIELTRQRRKELEKILNEALSDMEVD 963
                         YKPGGPVLA TS +QDC+ LTRQR KEL+ IL+EALS M++D
Sbjct: 248 VTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGMQID 303


>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score =  434 bits (1115), Expect = e-119
 Identities = 223/304 (73%), Positives = 256/304 (84%), Gaps = 11/304 (3%)
 Frame = +1

Query: 85  GDLSSEMEVEAFRRLFPLRFHERHLVESIRSDGRQLKKARDTSLALGAVSSANGSALAKV 264
           GDLSSEMEV+AFRRLFPLR+HER L++SIR D R L +ARDTSLALGAV+SA+GSALAK+
Sbjct: 8   GDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSALAKI 67

Query: 265 GCTTMLAAIKMEVMTPTAESPDEGSIAVDFHMPPICSPHVRPGRPAETAPVVAKQLSDTI 444
           GCTTMLAA+KMEVMTP  ESPDEGSIA++F+MPPICSP VRPGRPAE APVV+KQLSDTI
Sbjct: 68  GCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTI 127

Query: 445 LS--------SGLVDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLSAVGAFSHLQI 600
           L         SG+++LKELSLVSGKAAWMAYLDIYCLDADGSLFDAALL+AV AFSHL+I
Sbjct: 128 LRHVNVVTSFSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRI 187

Query: 601 PIVSLNDDGRVVLISDDK---KSEREPVNKDRRKLTLKNKPFSQTCILHKNYILLDPTAE 771
           P+VSLN++GRVV++S++    KSE+EPVNK +RKLTL + PFS TCILHKNYIL DPTAE
Sbjct: 188 PVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAE 247

Query: 772 EEAIMETMXXXXXXXXXXXXXXYKPGGPVLARTSVLQDCIELTRQRRKELEKILNEALSD 951
           EE+IMET+              YKPGGPVLA  S +QDCI LTRQR KEL+ ILNEA+SD
Sbjct: 248 EESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISD 307

Query: 952 MEVD 963
           MEVD
Sbjct: 308 MEVD 311


>gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
           tuberosum]
          Length = 314

 Score =  427 bits (1098), Expect = e-117
 Identities = 217/302 (71%), Positives = 249/302 (82%), Gaps = 4/302 (1%)
 Frame = +1

Query: 67  MDVGNGG-DLSSEMEVEAFRRLFPLRFHERHLVESIRSDGRQLKKARDTSLALGAVSSAN 243
           M   NG  DLSSEMEV+AFRRLFPLR+HE HL++S+R D R+L  ARDT+LALGAV+SA+
Sbjct: 1   MAAANGSSDLSSEMEVDAFRRLFPLRYHEHHLLKSVRPDARKLGSARDTTLALGAVASAD 60

Query: 244 GSALAKVGCTTMLAAIKMEVMTPTAESPDEGSIAVDFHMPPICSPHVRPGRPAETAPVVA 423
           GSALAK+G TTMLAAIKMEVMTPT E PDEGSIA++FHMPPICSP VRPGRPAE A V++
Sbjct: 61  GSALAKIGSTTMLAAIKMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVIS 120

Query: 424 KQLSDTILSSGLVDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLSAVGAFSHLQIP 603
           KQLSDTILSSG++DLKEL LV GKAAWMAYLDIYCLDADG+LFD ALLSAV AFSHL IP
Sbjct: 121 KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLNIP 180

Query: 604 IVSLNDDGRVVLISDDK---KSEREPVNKDRRKLTLKNKPFSQTCILHKNYILLDPTAEE 774
           +VSLNDDGR+VL+S+D    K E+EPVN ++RKL L + PFS TCILHKNYIL DPTAEE
Sbjct: 181 VVSLNDDGRIVLVSEDTVRLKLEKEPVNTEKRKLKLNSLPFSLTCILHKNYILADPTAEE 240

Query: 775 EAIMETMXXXXXXXXXXXXXXYKPGGPVLARTSVLQDCIELTRQRRKELEKILNEALSDM 954
           E IMET+               KPGGPVL+ TSV+QDCI L R+R KEL+ +LNEA+SDM
Sbjct: 241 EPIMETIVTVVLDSSHQLVSLNKPGGPVLSHTSVIQDCIGLARRRAKELQSVLNEAISDM 300

Query: 955 EV 960
           EV
Sbjct: 301 EV 302


>ref|XP_002308947.1| predicted protein [Populus trichocarpa] gi|222854923|gb|EEE92470.1|
           predicted protein [Populus trichocarpa]
          Length = 318

 Score =  425 bits (1092), Expect = e-116
 Identities = 221/311 (71%), Positives = 255/311 (81%), Gaps = 18/311 (5%)
 Frame = +1

Query: 85  GDLSSEMEVEAFRRLFPLRFHERHLVESIRSDGRQLKKARDTSLALGAVSSANGSALAKV 264
           GDLSSEMEV+AFRRLFPLR+ ERHL ESIR D R L +ARDT+LALGAV+SA+GSALAK+
Sbjct: 8   GDLSSEMEVDAFRRLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAHGSALAKI 67

Query: 265 GCTTMLAAIKMEVMTPTAESPDEGSIAVDFHMPPICSPHVRPGRPAETAPVVAKQLSDTI 444
           G TTMLAAIKMEVMTP+ ESP+EGSIA+DFHMPPICSP VRPGRPAE APV++KQLSDTI
Sbjct: 68  GSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTI 127

Query: 445 ---LSSGLVDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLSAVGAFSH-------- 591
              ++SG+++LKELSLVSGKAAWMAYLDIYCLDADG+LFDAALLSAVGAFSH        
Sbjct: 128 SRQVNSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHSAFIYYRS 187

Query: 592 ----LQIPIVSLNDDGRVVLIS---DDKKSEREPVNKDRRKLTLKNKPFSQTCILHKNYI 750
               +QIPIVSLNDDG++VL+S   D  K E EPVNK++RKLTL + PFS TCILHKNYI
Sbjct: 188 LICAVQIPIVSLNDDGKIVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTCILHKNYI 247

Query: 751 LLDPTAEEEAIMETMXXXXXXXXXXXXXXYKPGGPVLARTSVLQDCIELTRQRRKELEKI 930
           L DPTAEEE+IMET+              YKPGGPVLA+TS +QDC+ LTRQR KEL+ I
Sbjct: 248 LADPTAEEESIMETLVTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQRVKELQDI 307

Query: 931 LNEALSDMEVD 963
           L+E +S ME+D
Sbjct: 308 LDETISGMEID 318