BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00018540
         (575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containi...   283   1e-74
emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]   283   2e-74
ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containi...   278   5e-73
ref|XP_002510967.1| pentatricopeptide repeat-containing protein,...   278   5e-73
ref|XP_002866609.1| pentatricopeptide repeat-containing protein ...   272   3e-71

>ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  283 bits (725), Expect = 1e-74
 Identities = 136/190 (71%), Positives = 158/190 (83%)
 Frame = +1

Query: 1   GEFRVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKS 180
           GEF+  + LLMQMK++GIVFRESLF+++MKHYGR GLPGQATRLLLDMR  +SCEP+F+S
Sbjct: 143 GEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRS 202

Query: 181 YNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMM 360
           YNVVL VL+ G+CPKV  NVFYEML+KGI P V TF VV+KALC VNE+DSA  LL DM 
Sbjct: 203 YNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMT 262

Query: 361 KHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQ 540
           +HGCVPNA++YQTLIHALS   R+N+ LK LEEMLLM CIPDV TFND I GLC+  RI 
Sbjct: 263 RHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIH 322

Query: 541 EAGKLVDRMI 570
           EA KLVDRM+
Sbjct: 323 EAAKLVDRML 332



 Score = 89.7 bits (221), Expect = 3e-16
 Identities = 46/130 (35%), Positives = 74/130 (56%)
 Frame = +1

Query: 181 YNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMM 360
           YN +++ L   +  + A+N+F +M +KG  P++ TF  ++  LCKVN+ + A  L  DM+
Sbjct: 480 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539

Query: 361 KHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQ 540
             G + N + Y TLIHA      + +ALK + +ML   C  D  T+N +I  LCRA  I+
Sbjct: 540 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 599

Query: 541 EAGKLVDRMI 570
           +   L + M+
Sbjct: 600 KGLALFEDMM 609



 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 52/167 (31%), Positives = 80/167 (47%)
 Frame = +1

Query: 70  LFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVLVDGDCPKVAVNVFYE 249
           LF  ++  Y   G   +A  ++ +   +  C P   +YN ++  L        A  +  E
Sbjct: 373 LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNE 432

Query: 250 MLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNAVIYQTLIHALSMANR 429
           M  KG  PNV T+ +++   CK   L+ A  +L +M   G   NAV Y  LI AL    +
Sbjct: 433 MQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 492

Query: 430 INDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDRMI 570
           + DAL    +M    C PD+ TFN +I GLC+ ++ +EA  L   M+
Sbjct: 493 VQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 41/130 (31%), Positives = 69/130 (53%)
 Frame = +1

Query: 178 SYNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDM 357
           +YN ++   +     + A+ +  +ML +G P +  T+  ++KALC+   ++    L  DM
Sbjct: 549 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 608

Query: 358 MKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRI 537
           M  G  PN +    LI+ L     I  AL++L +M+     PD+ T+N +I GLC+  R 
Sbjct: 609 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRA 668

Query: 538 QEAGKLVDRM 567
           QEA  L D++
Sbjct: 669 QEALNLFDKL 678



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
 Frame = +1

Query: 121 ATRLLLDMRNTFSCEPSFKSYNVVLTVLVDGDCPK----VAVNVFYEMLNKGIPPNVCTF 288
           + R L++      CEP+  +Y    T+L+D  C +     A NV  EM  KG+  N   +
Sbjct: 425 SARELMNEMQIKGCEPNVITY----TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGY 480

Query: 289 CVVVKALCKVNELDSASMLLSDMMKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLL 468
             ++ ALCK  ++  A  +  DM   GC P+   + +LI  L   N+  +AL   ++MLL
Sbjct: 481 NCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLL 540

Query: 469 MSCIPDVETFNDIICGLCRADRIQEAGKLVDRMIF 573
              I +  T+N +I    R   +QEA KLV+ M+F
Sbjct: 541 EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 575



 Score = 72.4 bits (176), Expect = 5e-11
 Identities = 44/180 (24%), Positives = 84/180 (46%)
 Frame = +1

Query: 25   LLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVL 204
            L   M  +G++     +  ++  + R G   +A +L+ DM     C     +YN ++  L
Sbjct: 534  LYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR-GCPLDDITYNGLIKAL 592

Query: 205  VDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNA 384
                  +  + +F +M++KG+ PN  +  +++  LC+   +  A   L DM+  G  P+ 
Sbjct: 593  CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 652

Query: 385  VIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDR 564
            V Y +LI+ L    R  +AL   +++ +    PD  T+N +I   C+     +A  L+ R
Sbjct: 653  VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSR 712



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 32/218 (14%)
 Frame = +1

Query: 10  RVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNV 189
           +VV  +  +M   GI      F +VMK          A  LL DM     C P+   Y  
Sbjct: 217 KVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTR-HGCVPNAIVYQT 275

Query: 190 VLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHG 369
           ++  L         + +  EML  G  P+V TF   +  LCK+  +  A+ L+  M+  G
Sbjct: 276 LIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG 335

Query: 370 CVPNAVIYQTLIHALSMANRINDALKYL-------------------------------- 453
             PN+  Y  L+H L    ++++A   L                                
Sbjct: 336 FTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMH 395

Query: 454 EEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDRM 567
           E ML + C PD+ T+N +I GLC+   +  A +L++ M
Sbjct: 396 ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEM 433



 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
 Frame = +1

Query: 199 VLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSD-MMKHGCV 375
           VL+ G C    V+    +LNK   PNV  F  ++        LD A  ++ + M+  GC 
Sbjct: 345 VLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCG 404

Query: 376 PNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKL 555
           P+   Y TLI  L     +  A + + EM +  C P+V T+  +I   C+  R++EA  +
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 464

Query: 556 VDRM 567
           +D M
Sbjct: 465 LDEM 468


>emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  283 bits (723), Expect = 2e-74
 Identities = 135/190 (71%), Positives = 158/190 (83%)
 Frame = +1

Query: 1   GEFRVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKS 180
           GEF+ ++ LLMQMK++GIVFRESLF+++MKHYGR GLPGQATRLLLDMR  +SCEP+F+S
Sbjct: 125 GEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRS 184

Query: 181 YNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMM 360
           YNVVL VL+ G+CPKV  NVFYEML+KGI P V TF VV+KALC VNE+DSA  LL DM 
Sbjct: 185 YNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMT 244

Query: 361 KHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQ 540
           +HGCVPNA++YQTLIHAL    R+N+ LK LEEMLLM CIPDV TFND I GLC+  RI 
Sbjct: 245 RHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIH 304

Query: 541 EAGKLVDRMI 570
           EA KLVDRM+
Sbjct: 305 EAAKLVDRML 314



 Score = 89.7 bits (221), Expect = 3e-16
 Identities = 46/130 (35%), Positives = 74/130 (56%)
 Frame = +1

Query: 181 YNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMM 360
           YN +++ L   +  + A+N+F +M +KG  P++ TF  ++  LCKVN+ + A  L  DM+
Sbjct: 462 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521

Query: 361 KHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQ 540
             G + N + Y TLIHA      + +ALK + +ML   C  D  T+N +I  LCRA  I+
Sbjct: 522 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 581

Query: 541 EAGKLVDRMI 570
           +   L + M+
Sbjct: 582 KGLALFEDMM 591



 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 52/167 (31%), Positives = 80/167 (47%)
 Frame = +1

Query: 70  LFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVLVDGDCPKVAVNVFYE 249
           LF  ++  Y   G   +A  ++ +   +  C P   +YN ++  L        A  +  E
Sbjct: 355 LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNE 414

Query: 250 MLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNAVIYQTLIHALSMANR 429
           M  KG  PNV T+ +++   CK   L+ A  +L +M   G   NAV Y  LI AL    +
Sbjct: 415 MQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 474

Query: 430 INDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDRMI 570
           + DAL    +M    C PD+ TFN +I GLC+ ++ +EA  L   M+
Sbjct: 475 VQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 41/130 (31%), Positives = 69/130 (53%)
 Frame = +1

Query: 178 SYNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDM 357
           +YN ++   +     + A+ +  +ML +G P +  T+  ++KALC+   ++    L  DM
Sbjct: 531 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 590

Query: 358 MKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRI 537
           M  G  PN +    LI+ L     I  AL++L +M+     PD+ T+N +I GLC+  R 
Sbjct: 591 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRA 650

Query: 538 QEAGKLVDRM 567
           QEA  L D++
Sbjct: 651 QEALNLFDKL 660



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
 Frame = +1

Query: 121 ATRLLLDMRNTFSCEPSFKSYNVVLTVLVDGDCPK----VAVNVFYEMLNKGIPPNVCTF 288
           + R L++      CEP+  +Y    T+L+D  C +     A NV  EM  KG+  N   +
Sbjct: 407 SARELMNEMQIKGCEPNVITY----TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGY 462

Query: 289 CVVVKALCKVNELDSASMLLSDMMKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLL 468
             ++ ALCK  ++  A  +  DM   GC P+   + +LI  L   N+  +AL   ++MLL
Sbjct: 463 NCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLL 522

Query: 469 MSCIPDVETFNDIICGLCRADRIQEAGKLVDRMIF 573
              I +  T+N +I    R   +QEA KLV+ M+F
Sbjct: 523 EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 557



 Score = 72.4 bits (176), Expect = 5e-11
 Identities = 44/180 (24%), Positives = 84/180 (46%)
 Frame = +1

Query: 25   LLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVL 204
            L   M  +G++     +  ++  + R G   +A +L+ DM     C     +YN ++  L
Sbjct: 516  LYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR-GCPLDDITYNGLIKAL 574

Query: 205  VDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNA 384
                  +  + +F +M++KG+ PN  +  +++  LC+   +  A   L DM+  G  P+ 
Sbjct: 575  CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 634

Query: 385  VIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDR 564
            V Y +LI+ L    R  +AL   +++ +    PD  T+N +I   C+     +A  L+ R
Sbjct: 635  VTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSR 694



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 32/218 (14%)
 Frame = +1

Query: 10  RVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNV 189
           +VV  +  +M   GI      F +VMK          A  LL DM     C P+   Y  
Sbjct: 199 KVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTR-HGCVPNAIVYQT 257

Query: 190 VLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHG 369
           ++  L         + +  EML  G  P+V TF   +  LCK+  +  A+ L+  M+  G
Sbjct: 258 LIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG 317

Query: 370 CVPNAVIYQTLIHALSMANRINDALKYL-------------------------------- 453
             PN+  Y  L+H L    ++++A   L                                
Sbjct: 318 FTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMH 377

Query: 454 EEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDRM 567
           E ML + C PD+ T+N +I GLC+   +  A +L++ M
Sbjct: 378 ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEM 415



 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
 Frame = +1

Query: 199 VLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSD-MMKHGCV 375
           VL+ G C    V+    +LNK   PNV  F  ++        LD A  ++ + M+  GC 
Sbjct: 327 VLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCG 386

Query: 376 PNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKL 555
           P+   Y TLI  L     +  A + + EM +  C P+V T+  +I   C+  R++EA  +
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 446

Query: 556 VDRM 567
           +D M
Sbjct: 447 LDEM 450


>ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  278 bits (711), Expect = 5e-73
 Identities = 129/190 (67%), Positives = 163/190 (85%)
 Frame = +1

Query: 1   GEFRVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKS 180
           G+F+V+EKLL QMK++G++F+ESLF+++MKHYG+ GLPGQATRLLLDM   +SC+P+FKS
Sbjct: 113 GDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKS 172

Query: 181 YNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMM 360
           YNVVL +LVDGDCP+VA NVFY+ML++G+ P V TF VV+KALC V+E+DSA  LL DM 
Sbjct: 173 YNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMA 232

Query: 361 KHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQ 540
           KHGCVPN+VIYQTLIHAL   NR+++AL+ LE+M LM C PDV+TFND+I GLCRA RI 
Sbjct: 233 KHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIH 292

Query: 541 EAGKLVDRMI 570
           EA KL+DRM+
Sbjct: 293 EAAKLLDRML 302



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 43/130 (33%), Positives = 69/130 (53%)
 Frame = +1

Query: 181 YNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMM 360
           YN ++  L      + A+ +F EM  KG  P++ TF  ++  LCK ++++ A  L  DM 
Sbjct: 450 YNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMF 509

Query: 361 KHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQ 540
             G + N V Y TL+HA  M + I  A K ++EML   C  D  T+N +I  LC+   ++
Sbjct: 510 LEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVE 569

Query: 541 EAGKLVDRMI 570
           +   L + M+
Sbjct: 570 KGLGLFEEML 579



 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 41/130 (31%), Positives = 71/130 (54%)
 Frame = +1

Query: 178 SYNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDM 357
           +YN ++   +  D  + A  +  EML +G P +  T+  ++KALCK   ++    L  +M
Sbjct: 519 TYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEM 578

Query: 358 MKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRI 537
           +  G  P  +    LI  L    ++NDALK+L++M+     PD+ T+N +I GLC+   +
Sbjct: 579 LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHV 638

Query: 538 QEAGKLVDRM 567
           QEA  L +++
Sbjct: 639 QEASNLFNKL 648



 Score = 81.6 bits (200), Expect = 8e-14
 Identities = 51/166 (30%), Positives = 81/166 (48%)
 Frame = +1

Query: 70  LFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVLVDGDCPKVAVNVFYE 249
           L+  ++  Y   G   +A  LL +       EP   ++N+++  LV       A+ +  E
Sbjct: 343 LYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNE 402

Query: 250 MLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNAVIYQTLIHALSMANR 429
           M+ K   PNV T+ +++   CK   L+ A+ +++ M   G   N V Y  LI AL     
Sbjct: 403 MVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGN 462

Query: 430 INDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDRM 567
           I +AL+   EM    C PD+ TFN +I GLC+  +++EA  L   M
Sbjct: 463 IEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDM 508



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
 Frame = +1

Query: 25  LLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVL 204
           LL  M + G V    ++  ++          +A +LL DM     CEP  +++N V+  L
Sbjct: 227 LLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMF-LMCCEPDVQTFNDVIHGL 285

Query: 205 VDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNA 384
                   A  +   ML +G   +  T+  ++  LC++ ++D A  LL+ +      PN 
Sbjct: 286 CRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNT 341

Query: 385 VIYQTLIHALSMANRINDALKYL-EEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVD 561
           V+Y TLI     + R  +A   L   M++    PD  TFN +I GL +   +  A +L++
Sbjct: 342 VLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLN 401

Query: 562 RMI 570
            M+
Sbjct: 402 EMV 404



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/123 (26%), Positives = 58/123 (47%)
 Frame = +1

Query: 178 SYNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDM 357
           +YN ++  L      +  + +F EML KGI P + +  +++  LC+  +++ A   L DM
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM 613

Query: 358 MKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRI 537
           +  G  P+ V Y +LI+ L     + +A     ++      PD  T+N +I   C     
Sbjct: 614 IHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMF 673

Query: 538 QEA 546
            +A
Sbjct: 674 NDA 676



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 2/185 (1%)
 Frame = +1

Query: 10  RVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNV 189
           RV   +   M   G+      F +VMK          A  LL DM     C P+   Y  
Sbjct: 187 RVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAK-HGCVPNSVIYQT 245

Query: 190 VLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHG 369
           ++  L + +    A+ +  +M      P+V TF  V+  LC+   +  A+ LL  M+  G
Sbjct: 246 LIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRG 305

Query: 370 CVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVET--FNDIICGLCRADRIQE 543
              +A+ Y  L+H L    ++++A        L++ IP+  T  +N +I G   + R +E
Sbjct: 306 FSTDALTYGYLMHGLCRMGQVDEA------RALLNKIPNPNTVLYNTLISGYVASGRFEE 359

Query: 544 AGKLV 558
           A  L+
Sbjct: 360 AKDLL 364


>ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550082|gb|EEF51569.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 774

 Score =  278 bits (711), Expect = 5e-73
 Identities = 129/190 (67%), Positives = 159/190 (83%)
 Frame = +1

Query: 4   EFRVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSY 183
           EF+V++KLL+Q+KE+GI FRESLF+ +MK+YGR  LPGQATR+LLDM+  + CEP+FKSY
Sbjct: 117 EFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCEPTFKSY 176

Query: 184 NVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMK 363
           NVVL +LV  +CP VA NVFYEML+KG+ P V TF VV+KALC VNE+D+A  LL DM K
Sbjct: 177 NVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTK 236

Query: 364 HGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQE 543
           HGCVPN+V+YQTLIHALS  +R+N+ALK LEEM LM C+PDV+TFND+I GLCR +RI E
Sbjct: 237 HGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHE 296

Query: 544 AGKLVDRMIF 573
             KLVDRM+F
Sbjct: 297 GAKLVDRMLF 306



 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
 Frame = +1

Query: 163 EPSFKSYNVVLTVLV-DGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSAS 339
           E +   YNV+L  L  +G  PK A+++  EM +KG  P++ TF  ++  LCKV+  + A 
Sbjct: 447 ELNIMGYNVLLRALCKNGKVPK-ALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDAL 505

Query: 340 MLLSDMMKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGL 519
            L  DM+  G + N V Y TLIHA      I +ALK + +ML   C  D  T+N +I   
Sbjct: 506 ALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAF 565

Query: 520 CRADRIQEAGKLVDRMI 570
           C+    ++A  L D M+
Sbjct: 566 CKLGATEKALGLFDEMV 582



 Score = 85.9 bits (211), Expect = 4e-15
 Identities = 50/166 (30%), Positives = 81/166 (48%)
 Frame = +1

Query: 73  FLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVLVDGDCPKVAVNVFYEM 252
           F +++  Y + G   +A   L D      C P   ++N ++  L        AV++  +M
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406

Query: 253 LNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNAVIYQTLIHALSMANRI 432
              G  PN+ T+  ++   CK N+L+ A  +L++M   G   N + Y  L+ AL    ++
Sbjct: 407 SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKV 466

Query: 433 NDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDRMI 570
             AL  L EM    C PD+ TFN +I GLC+ DR ++A  L   M+
Sbjct: 467 PKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDML 512



 Score = 85.5 bits (210), Expect = 6e-15
 Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
 Frame = +1

Query: 106 GLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVLVDGDCPKVAVN----VFYEMLNKGIPP 273
           GL G A  ++ DM +   C P+  +Y    T L+DG C K  +     V  EM  KG   
Sbjct: 394 GLMGSAVDMVNDM-SANGCTPNLITY----TTLLDGFCKKNQLEEAGYVLNEMSAKGFEL 448

Query: 274 NVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNAVIYQTLIHALSMANRINDALKYL 453
           N+  + V+++ALCK  ++  A  +L +M   GC P+   + TLI  L   +R  DAL   
Sbjct: 449 NIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALY 508

Query: 454 EEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDRMIF 573
            +MLL   I +  T+N +I    R   IQEA KLV+ M+F
Sbjct: 509 RDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLF 548



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 49/180 (27%), Positives = 86/180 (47%)
 Frame = +1

Query: 25   LLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVL 204
            L   M  DG++     +  ++  + RGG   +A +L+ DM     C     +YN ++   
Sbjct: 507  LYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFR-GCPLDEITYNGLIKAF 565

Query: 205  VDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNA 384
                  + A+ +F EM+ K + P+  +  +++  LC+V ++ +A  LL DM+  G  P+ 
Sbjct: 566  CKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDV 625

Query: 385  VIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDR 564
            V Y +LI+ L     I +A     ++      PD  T+N +IC  CRA    +A  L+ R
Sbjct: 626  VTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLR 685



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 38/130 (29%), Positives = 72/130 (55%)
 Frame = +1

Query: 178 SYNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDM 357
           +YN ++   + G   + A+ +  +ML +G P +  T+  ++KA CK+   + A  L  +M
Sbjct: 522 TYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEM 581

Query: 358 MKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRI 537
           ++   VP+ +    LI+ L    ++ +AL+ L +M+     PDV T+N +I GLC+   I
Sbjct: 582 VRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNI 641

Query: 538 QEAGKLVDRM 567
           +EA  L +++
Sbjct: 642 REAFNLFNKL 651



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 32/217 (14%)
 Frame = +1

Query: 13  VVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVV 192
           V   +  +M   G++     F +VMK          A  LL DM     C P+   Y  +
Sbjct: 191 VAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTK-HGCVPNSVVYQTL 249

Query: 193 LTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGC 372
           +  L   D    A+ +  EM   G  P+V TF  V+  LC++N +   + L+  M+  G 
Sbjct: 250 IHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGF 309

Query: 373 VPNAVIYQTLIHALSMANRINDALKYL--------------------------------E 456
            PN + Y  L++ L    ++++A   L                                +
Sbjct: 310 TPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYD 369

Query: 457 EMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDRM 567
           +M+   C PDV TFN +I GLC+   +  A  +V+ M
Sbjct: 370 KMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406


>ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312444|gb|EFH42868.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 724

 Score =  272 bits (695), Expect = 3e-71
 Identities = 124/190 (65%), Positives = 159/190 (83%)
 Frame = +1

Query: 1   GEFRVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKS 180
           GEF+ +++LLMQMK++GIVF+ESLF+ +M+ Y + G PGQ TRL+L+MRN +SCEP+FKS
Sbjct: 119 GEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKS 178

Query: 181 YNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMM 360
           YNVVL +LV G+C KVA NVFY+ML++ IPP + TF VV+KALC VNE+DSA  +L DM 
Sbjct: 179 YNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMT 238

Query: 361 KHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQ 540
           KHGCVPN+VIYQTLIH+LS  NR+N+AL+ LEEM LM C+PD ETFND+I GLC+ DRI 
Sbjct: 239 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 298

Query: 541 EAGKLVDRMI 570
           EA K+V+RM+
Sbjct: 299 EAAKMVNRML 308



 Score = 98.6 bits (244), Expect = 7e-19
 Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 39/213 (18%)
 Frame = +1

Query: 49   GIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVLVDGDCP-- 222
            GIV     +  ++  Y + GL G A  +L DMRN   C+P+  SY    T+LVDG C   
Sbjct: 378  GIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNK-GCKPNVYSY----TILVDGFCKLG 432

Query: 223  -------------------------------------KVAVNVFYEMLNKGIPPNVCTFC 291
                                                   AV +F EM  KG  P+V TF 
Sbjct: 433  KIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFN 492

Query: 292  VVVKALCKVNELDSASMLLSDMMKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLM 471
             ++  LC+V+E+  A  LL DM+  G V N V Y TLI+A      I +A K + EM+  
Sbjct: 493  SLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQ 552

Query: 472  SCIPDVETFNDIICGLCRADRIQEAGKLVDRMI 570
              + D  T+N +I GLCRA  + +A  L ++M+
Sbjct: 553  GSLLDEITYNSLIKGLCRAGEVDKARSLFEKML 585



 Score = 78.2 bits (191), Expect = 9e-13
 Identities = 39/122 (31%), Positives = 70/122 (57%)
 Frame = +1

Query: 178 SYNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDM 357
           +YN ++   +     K A  +  EM+ +G   +  T+  ++K LC+  E+D A  L   M
Sbjct: 525 TYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584

Query: 358 MKHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRI 537
           ++ G VP+++    LI+ L  +  + +A+++ +EM+L    PD+ TFN +I GLCRA RI
Sbjct: 585 LRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 644

Query: 538 QE 543
           ++
Sbjct: 645 ED 646



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 44/182 (24%), Positives = 86/182 (47%)
 Frame = +1

Query: 25   LLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKSYNVVLTVL 204
            LL  M  +G+V     +  ++  + R G   +A +L+ +M    S        +++  + 
Sbjct: 510  LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLC 569

Query: 205  VDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMMKHGCVPNA 384
              G+  K A ++F +ML  G+ P+  +  +++  LC+   ++ A     +M+  G  P+ 
Sbjct: 570  RAGEVDK-ARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 628

Query: 385  VIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGLCRADRIQEAGKLVDR 564
            V + +LI+ L  A RI D L    ++      PD  T+N ++  LC+   + +A  L+D 
Sbjct: 629  VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDE 688

Query: 565  MI 570
             I
Sbjct: 689  GI 690



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 42/173 (24%), Positives = 76/173 (43%)
 Frame = +1

Query: 1    GEFRVVEKLLMQMKEDGIVFRESLFLMVMKHYGRGGLPGQATRLLLDMRNTFSCEPSFKS 180
            GE +   KL+ +M   G +  E  +  ++K   R G   +A  L   M       PS  S
Sbjct: 537  GEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD-GLVPSSIS 595

Query: 181  YNVVLTVLVDGDCPKVAVNVFYEMLNKGIPPNVCTFCVVVKALCKVNELDSASMLLSDMM 360
             N+++  L      + AV    EM+ +G  P++ TF  ++  LC+   ++    +   + 
Sbjct: 596  CNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 655

Query: 361  KHGCVPNAVIYQTLIHALSMANRINDALKYLEEMLLMSCIPDVETFNDIICGL 519
              G  P+ V Y TL+  L     + DA   L+E +    +P+  T++ ++  L
Sbjct: 656  AEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSL 708