BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00018374
         (1665 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL i...   563   e-158
gb|AAG34879.1|AF261024_1 putative chloroplast RNA helicase VDL' ...   558   e-156
ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   553   e-155
emb|CBI26203.3| unnamed protein product [Vitis vinifera]              546   e-153
ref|XP_004134454.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   533   e-149

>gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
            gi|11385590|gb|AAG34876.1|AF261021_1 putative chloroplast
            RNA helicase VDL isoform 1 [Nicotiana tabacum]
          Length = 466

 Score =  563 bits (1451), Expect = e-158
 Identities = 284/417 (68%), Positives = 339/417 (81%), Gaps = 1/417 (0%)
 Frame = +3

Query: 354  DVSTSDSSTLRELCSRHVPEHVLDRMEENGYTVPTEVQKRALPVLLSGRDCVLHAQTGSG 533
            +   S ++TLRELC  HVPEHV+ R+EE GY +PTEVQ +ALP L SGRDCVLHAQTGSG
Sbjct: 57   ETKDSSTATLRELCHGHVPEHVIRRVEEVGYVIPTEVQLQALPFLYSGRDCVLHAQTGSG 116

Query: 534  KTLAYLLSVLSVVNTNRSAVQAVIVVPTRELGMQVRELPFFFFLVTKAARMVISGFAENP 713
            KTLAYLL +LSV+++ RSAVQA+IVVPTRELGMQV          TK ARM+ +  +E  
Sbjct: 117  KTLAYLLQILSVIDSQRSAVQALIVVPTRELGMQV----------TKVARMLAAKPSELE 166

Query: 714  LEQKACIVMALLDGGILTRHKSWLKAEPPTIIVATLGSXXXXXXXXXXXXXXXXXXVIDE 893
               K+C VMALLDGG+L RHKSWLKAEPPTI+VAT+GS                  V+DE
Sbjct: 167  SGPKSCTVMALLDGGMLNRHKSWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDE 226

Query: 894  VDFMFNSSKEVASLRKLLTSYSSIKDRQTILASASIPQHRRFLYDCIQQKWTKSDVVHVH 1073
            VDFMFNSSKE++SL++LLTSYS+ K+RQTI ASASIPQHRRFLYDC+QQKWTK+DVVHVH
Sbjct: 227  VDFMFNSSKEISSLKRLLTSYSTSKNRQTIFASASIPQHRRFLYDCVQQKWTKADVVHVH 286

Query: 1074 VNSLQPIPSCLHHRFVICNRRERIKTLLSLLKADAPQSAIIFVSEQSEKSKKAGNASSST 1253
            VNS++P+PSCLHHRFV+C +RE+ + LLSLL+ D+P+SAIIFVSEQSEKSKKAGNA   T
Sbjct: 287  VNSVEPMPSCLHHRFVVCTKREKNQVLLSLLQVDSPESAIIFVSEQSEKSKKAGNAPPIT 346

Query: 1254 LVVDSLKASPLGCSGIVLLEDEMHINKRTASLLDVR-QGGYILVATDIAARGIDLPETTH 1430
            L+VD L +S  G S + LLE++M+ NKR ASL ++R  GGY+LVATDIAARG+DLPETTH
Sbjct: 347  LLVDFLMSSSGGFSNVSLLEEDMNFNKRAASLSELRGGGGYLLVATDIAARGVDLPETTH 406

Query: 1431 IYNFDLPKDAVNYLHRAGRTGRKPFSEAKCFVTNILTSKERFVLQRFENELLFHCAE 1601
            IYNFD+PKDAVNYLHRAGRTGRKPFS+ KCFVT+I+T +ERFVLQRFENEL+F C +
Sbjct: 407  IYNFDIPKDAVNYLHRAGRTGRKPFSDKKCFVTSIITVEERFVLQRFENELMFCCEQ 463


>gb|AAG34879.1|AF261024_1 putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana tabacum]
          Length = 466

 Score =  558 bits (1437), Expect = e-156
 Identities = 286/416 (68%), Positives = 336/416 (80%), Gaps = 3/416 (0%)
 Frame = +3

Query: 363  TSDSSTL--RELCSRHVPEHVLDRMEENGYTVPTEVQKRALPVLLSGRDCVLHAQTGSGK 536
            T DSST   RELC  HVPEHV+ R+EE GY +PTEVQ  ALP L SGRDCVLHAQTGSGK
Sbjct: 58   TKDSSTATPRELCHGHVPEHVIRRVEEVGYVIPTEVQLLALPFLYSGRDCVLHAQTGSGK 117

Query: 537  TLAYLLSVLSVVNTNRSAVQAVIVVPTRELGMQVRELPFFFFLVTKAARMVISGFAENPL 716
            TLAYLL +LSV+++ RSAVQA+IVVPTRELGMQV          TK AR + +  +E   
Sbjct: 118  TLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQV----------TKVARTLAAKPSELKS 167

Query: 717  EQKACIVMALLDGGILTRHKSWLKAEPPTIIVATLGSXXXXXXXXXXXXXXXXXXVIDEV 896
              K+C VMALLDGG+L RHKSWLKAEPPTI+VAT+GS                  V+DEV
Sbjct: 168  GPKSCTVMALLDGGMLNRHKSWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEV 227

Query: 897  DFMFNSSKEVASLRKLLTSYSSIKDRQTILASASIPQHRRFLYDCIQQKWTKSDVVHVHV 1076
            DFMFNSSKE++SL++LLTSYSS K+RQTI ASASIPQHRRFLYDC+QQKWTK+DVVHVHV
Sbjct: 228  DFMFNSSKEISSLKRLLTSYSSSKNRQTIFASASIPQHRRFLYDCVQQKWTKADVVHVHV 287

Query: 1077 NSLQPIPSCLHHRFVICNRRERIKTLLSLLKADAPQSAIIFVSEQSEKSKKAGNASSSTL 1256
            NS++P+PSCLHHRFV+C +RE+ + LLSLL+ D+P+SAIIFVSEQSEKSKKAGNA   TL
Sbjct: 288  NSVEPMPSCLHHRFVVCTKREKNQVLLSLLQVDSPESAIIFVSEQSEKSKKAGNAPPITL 347

Query: 1257 VVDSLKASPLGCSGIVLLEDEMHINKRTASLLDVR-QGGYILVATDIAARGIDLPETTHI 1433
            +VD L +S  G S + LLE++M+ NKR ASL ++R  GGY+LVATDIAARG+DLPETTHI
Sbjct: 348  LVDFLMSSSGGFSNVSLLEEDMNFNKRAASLSELRGGGGYLLVATDIAARGVDLPETTHI 407

Query: 1434 YNFDLPKDAVNYLHRAGRTGRKPFSEAKCFVTNILTSKERFVLQRFENELLFHCAE 1601
            YNFD+PKDAVNYLHRAGRTGRKPFS+ KCFVT+I+T +ERFVLQRFENEL+F C +
Sbjct: 408  YNFDIPKDAVNYLHRAGRTGRKPFSDKKCFVTSIITVEERFVLQRFENELMFCCEQ 463


>ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like
            [Vitis vinifera]
          Length = 482

 Score =  553 bits (1424), Expect = e-155
 Identities = 287/427 (67%), Positives = 336/427 (78%), Gaps = 5/427 (1%)
 Frame = +3

Query: 336  TLNNVPDVSTSD----SSTLRELCSRHVPEHVLDRMEENGYTVPTEVQKRALPVLLSGRD 503
            TLN+      SD    + TLRE+C   VPEHVL R+EE G+ VPT+VQ++ALPVLLSGRD
Sbjct: 59   TLNSSSITEASDIGERTLTLREICQGCVPEHVLRRIEEVGFIVPTDVQQQALPVLLSGRD 118

Query: 504  CVLHAQTGSGKTLAYLLSVLSVVNTNRSAVQAVIVVPTRELGMQVRELPFFFFLVTKAAR 683
            C+LHAQTGSGKTL YLL + SVVNT  SAVQA+IVVPTRELG+QV          TK AR
Sbjct: 119  CILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQV----------TKVAR 168

Query: 684  MVISGFAENPLEQKACIVMALLDGGILTRHKSWLKAEPPTIIVATLGSXXXXXXXXXXXX 863
            M+ +   E  LEQK+C VMALLDGG+L RHKSWLKAEPPTI+VAT+ S            
Sbjct: 169  MLAAKPMEPELEQKSCTVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEKQIFKL 228

Query: 864  XXXXXXVIDEVDFMFNSSKEVASLRKLLTSYSSIKDRQTILASASIPQHRRFLYDCIQQK 1043
                  VIDEVDFMFN+SK+V SLRKLLTSYSS  +RQT+ ASASIPQHRRFL+DCIQQK
Sbjct: 229  ESMRVLVIDEVDFMFNASKQVGSLRKLLTSYSSTNNRQTVFASASIPQHRRFLHDCIQQK 288

Query: 1044 WTKSDVVHVHVNSLQPIPSCLHHRFVICNRRERIKTLLSLLKADAPQSAIIFVSEQSEKS 1223
            WTKSDVVHVHVN ++P+PS LHHRFVICN+ ER +TLLSLL +DAP+  IIFV EQSEKS
Sbjct: 289  WTKSDVVHVHVNPIEPMPSSLHHRFVICNKYERRQTLLSLLHSDAPECGIIFVGEQSEKS 348

Query: 1224 KKAGNASSSTLVVDSLKASPLGCSGIVLLEDEMHINKRTASLLDVRQ-GGYILVATDIAA 1400
            KKAGNA S+TL++D LK S  GC  I+LLE++M+ N R ASL +VRQ GGY+L++TDIAA
Sbjct: 349  KKAGNAPSATLLIDFLKTSYGGCPDILLLEEDMNFNLRAASLSEVRQRGGYLLISTDIAA 408

Query: 1401 RGIDLPETTHIYNFDLPKDAVNYLHRAGRTGRKPFSEAKCFVTNILTSKERFVLQRFENE 1580
            RG+DLPETTHIYNFDLP+  V+YLHRAGR  RKPFS+ KC VTNI+TS+ERFVLQR+ENE
Sbjct: 409  RGVDLPETTHIYNFDLPRTVVDYLHRAGRAARKPFSDQKCCVTNIITSEERFVLQRYENE 468

Query: 1581 LLFHCAE 1601
            L+FHC E
Sbjct: 469  LMFHCEE 475


>emb|CBI26203.3| unnamed protein product [Vitis vinifera]
          Length = 486

 Score =  546 bits (1407), Expect = e-153
 Identities = 286/431 (66%), Positives = 336/431 (77%), Gaps = 9/431 (2%)
 Frame = +3

Query: 336  TLNNVPDVSTSD----SSTLRELCSRHVPEHVLD----RMEENGYTVPTEVQKRALPVLL 491
            TLN+      SD    + TLRE+C   VPEHV+     R+EE G+ VPT+VQ++ALPVLL
Sbjct: 59   TLNSSSITEASDIGERTLTLREICQGCVPEHVIALICFRIEEVGFIVPTDVQQQALPVLL 118

Query: 492  SGRDCVLHAQTGSGKTLAYLLSVLSVVNTNRSAVQAVIVVPTRELGMQVRELPFFFFLVT 671
            SGRDC+LHAQTGSGKTL YLL + SVVNT  SAVQA+IVVPTRELG+QV          T
Sbjct: 119  SGRDCILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQV----------T 168

Query: 672  KAARMVISGFAENPLEQKACIVMALLDGGILTRHKSWLKAEPPTIIVATLGSXXXXXXXX 851
            K ARM+ +   E  LEQK+C VMALLDGG+L RHKSWLKAEPPTI+VAT+ S        
Sbjct: 169  KVARMLAAKPMEPELEQKSCTVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEKQ 228

Query: 852  XXXXXXXXXXVIDEVDFMFNSSKEVASLRKLLTSYSSIKDRQTILASASIPQHRRFLYDC 1031
                      VIDEVDFMFN+SK+V SLRKLLTSYSS  +RQT+ ASASIPQHRRFL+DC
Sbjct: 229  IFKLESMRVLVIDEVDFMFNASKQVGSLRKLLTSYSSTNNRQTVFASASIPQHRRFLHDC 288

Query: 1032 IQQKWTKSDVVHVHVNSLQPIPSCLHHRFVICNRRERIKTLLSLLKADAPQSAIIFVSEQ 1211
            IQQKWTKSDVVHVHVN ++P+PS LHHRFVICN+ ER +TLLSLL +DAP+  IIFV EQ
Sbjct: 289  IQQKWTKSDVVHVHVNPIEPMPSSLHHRFVICNKYERRQTLLSLLHSDAPECGIIFVGEQ 348

Query: 1212 SEKSKKAGNASSSTLVVDSLKASPLGCSGIVLLEDEMHINKRTASLLDVRQ-GGYILVAT 1388
            SEKSKKAGNA S+TL++D LK S  GC  I+LLE++M+ N R ASL +VRQ GGY+L++T
Sbjct: 349  SEKSKKAGNAPSATLLIDFLKTSYGGCPDILLLEEDMNFNLRAASLSEVRQRGGYLLIST 408

Query: 1389 DIAARGIDLPETTHIYNFDLPKDAVNYLHRAGRTGRKPFSEAKCFVTNILTSKERFVLQR 1568
            DIAARG+DLPETTHIYNFDLP+  V+YLHRAGR  RKPFS+ KC VTNI+TS+ERFVLQR
Sbjct: 409  DIAARGVDLPETTHIYNFDLPRTVVDYLHRAGRAARKPFSDQKCCVTNIITSEERFVLQR 468

Query: 1569 FENELLFHCAE 1601
            +ENEL+FHC E
Sbjct: 469  YENELMFHCEE 479


>ref|XP_004134454.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like
            [Cucumis sativus] gi|449531697|ref|XP_004172822.1|
            PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
            chloroplastic-like [Cucumis sativus]
          Length = 473

 Score =  533 bits (1372), Expect = e-149
 Identities = 275/440 (62%), Positives = 343/440 (77%), Gaps = 1/440 (0%)
 Frame = +3

Query: 285  TSASTIPLKATSINYTTTLNNVPDVSTSDSSTLRELCSRHVPEHVLDRMEENGYTVPTEV 464
            +++ + PL+A  +  +++L NV + S  ++STLRE+C+ HVPEH+L R EE G+  PT+V
Sbjct: 44   STSKSRPLQA--LLSSSSLKNVAE-SNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV 100

Query: 465  QKRALPVLLSGRDCVLHAQTGSGKTLAYLLSVLSVVNTNRSAVQAVIVVPTRELGMQVRE 644
            Q++ALPVL SGRDCVLHAQTGSGKTL YLL + SV+N  +SAVQA+IVVPTRELGMQV  
Sbjct: 101  QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQV-- 158

Query: 645  LPFFFFLVTKAARMVISGFAENPLEQKACIVMALLDGGILTRHKSWLKAEPPTIIVATLG 824
                    TK ARM+ +  A +     + +VMALLDGG+L RHK+WLKA+PP I+VAT+G
Sbjct: 159  --------TKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEILVATVG 210

Query: 825  SXXXXXXXXXXXXXXXXXXVIDEVDFMFNSSKEVASLRKLLTSYSSIKDRQTILASASIP 1004
            S                  VIDEVDFMF+SSK+V+SL+KLLTSYSS  +RQTI ASASIP
Sbjct: 211  SLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIP 270

Query: 1005 QHRRFLYDCIQQKWTKSDVVHVHVNSLQPIPSCLHHRFVICNRRERIKTLLSLLKADAPQ 1184
            QHR FL+DCIQQKWTKS VVH+H+NS QP+PSCL HRFV C + ++ +TLL+LL  D PQ
Sbjct: 271  QHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQ 330

Query: 1185 SAIIFVSEQSEKSKKAGNASSSTLVVDSLKASPLGCSGIVLLEDEMHINKRTASLLDVRQ 1364
            SAIIFVSEQSEKSKKAG    +TL++D LKAS  GCS ++LLE++++ N R +SL ++RQ
Sbjct: 331  SAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQ 390

Query: 1365 GG-YILVATDIAARGIDLPETTHIYNFDLPKDAVNYLHRAGRTGRKPFSEAKCFVTNILT 1541
            GG Y++VATDI ARGIDLPETTHIYNFDLP+ A++YLHRAGRTGRKPFSE KC VTN++T
Sbjct: 391  GGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLIT 450

Query: 1542 SKERFVLQRFENELLFHCAE 1601
            S+ERFVLQ+FENELLF C E
Sbjct: 451  SEERFVLQKFENELLFICEE 470