BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00018369
         (696 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   135   6e-30
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   120   2e-25
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   119   4e-25
gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn...   117   3e-24
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   105   9e-21

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  135 bits (341), Expect = 6e-30
 Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 5/208 (2%)
 Frame = +3

Query: 15  SFAHKATVWNREVYGNVHLKLCRICARIEGVQ*KIADSPSSNLARLESKLLSEYDELLTA 194
           SFA K   WN+E + N+  K   + ARI GVQ  ++    ++L +LE+KL  E D +L  
Sbjct: 278 SFADKLNKWNKEEFYNIFRKKSELWARISGVQALLSTGRQNHLIKLEAKLRREMDIVLDD 337

Query: 195 EKLLWYTKSRVQRLQFLGANTRYFHTSTIIRRQRNCIKMIQDSAGAWLTEQPDICAHITQ 374
           E+ LW+ KSR++ +     NTRYFH ST+IRR RN I M+Q++ G W++   ++ A +  
Sbjct: 338 EETLWFQKSRMEAICDGDRNTRYFHLSTVIRRSRNRIDMLQNNDGEWISNPMEVKAMVLG 397

Query: 375 FFASLYCSEASRSEL----RSPFP-ASLQPFEIATHLSLSNQISDSEITSALKSFKPLKT 539
           ++  L+  ++ +S      R  FP  +   FE      +   +S+ E+T ALKS KP K 
Sbjct: 398 YWKHLFSEDSVQSNFCHLPRDFFPQITADDFE-----KMMRPLSEVEVTLALKSMKPFKA 452

Query: 540 PGPGALHPIFFHKCWTSINYSVLHTIQQ 623
           PGP    P+F+ + W  +  +V+H + +
Sbjct: 453 PGPDGFQPLFYQRFWDLVKPNVMHLVSE 480


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score =  120 bits (302), Expect = 2e-25
 Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
 Frame = +3

Query: 27  KATVWNREVYGNVHLKLCRICARIEGVQ*KIADSPSSNLARLESKLLSEYDELLTAEKLL 206
           K   WNREV+G++H++  ++ A I+ VQ  +    S +L   E  LL E D +L  E+ L
Sbjct: 139 KLRKWNREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETL 198

Query: 207 WYTKSRVQRLQFLGANTRYFHTSTIIRRQRNCIKMIQDSAGAWLTEQPDICAHITQFFAS 386
           W+ KSR + ++    NT +FHTSTIIRR+RN I+ ++     W+T++ ++ A    ++  
Sbjct: 199 WFQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKR 258

Query: 387 LYCSEASRSELRSPFP-ASLQPFEIATHLSLSNQISDSEITSALKSFKPLKTPGPGALHP 563
           LY  E   SE+R+  P         A   +L    + +E+ SA+KS    K PGP    P
Sbjct: 259 LYSLE-DVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQP 317

Query: 564 IFFHKCWTSINYSV 605
           +F+ +CW ++  SV
Sbjct: 318 VFYQQCWETVGPSV 331


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  119 bits (299), Expect = 4e-25
 Identities = 64/190 (33%), Positives = 104/190 (54%), Gaps = 1/190 (0%)
 Frame = +3

Query: 39  WNREVYGNVHLKLCRICARIEGVQ*KIADSPSSNLARLESKLLSEYDELLTAEKLLWYTK 218
           WN+EV+GN+H++  ++ + ++ VQ  +    + +L   E  LL E+D LL  E+ LW+ K
Sbjct: 95  WNKEVFGNIHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQK 154

Query: 219 SRVQRLQFLGANTRYFHTSTIIRRQRNCIKMIQDSAGAWLTEQPDICAHITQFFASLYCS 398
           SR + L     NT +FHTST+IRR+RN I+M++DS   W+TE+  +      ++  LY  
Sbjct: 155 SREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSL 214

Query: 399 EASRSELRSPFPASLQP-FEIATHLSLSNQISDSEITSALKSFKPLKTPGPGALHPIFFH 575
           E   S +R   P    P        +L+   +  E+  A++S    K PGP    P+F+ 
Sbjct: 215 E-DVSVVRGTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQ 273

Query: 576 KCWTSINYSV 605
           +CW ++  SV
Sbjct: 274 QCWETVGESV 283


>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
          Length = 464

 Score =  117 bits (292), Expect = 3e-24
 Identities = 59/204 (28%), Positives = 103/204 (50%)
 Frame = +3

Query: 6   DSLSFAHKATVWNREVYGNVHLKLCRICARIEGVQ*KIADSPSSNLARLESKLLSEYDEL 185
           D L    K   WN+EV+GN+  +  ++   I+ VQ  +  + + +L   E  L+ E++ +
Sbjct: 242 DLLYSKEKLKKWNKEVFGNIQQRKDKLVQEIQAVQDFLEHNQTDDLLNKEDVLIKEFEVV 301

Query: 186 LTAEKLLWYTKSRVQRLQFLGANTRYFHTSTIIRRQRNCIKMIQDSAGAWLTEQPDICAH 365
           L  E+++W+ KSR + +     NT+YFHTSTIIRR+RN I+M++D  G W+ E  ++   
Sbjct: 302 LEQEEIVWFQKSREKWIALGDRNTKYFHTSTIIRRRRNQIEMLKDDEGKWVEEPEELAKM 361

Query: 366 ITQFFASLYCSEASRSELRSPFPASLQPFEIATHLSLSNQISDSEITSALKSFKPLKTPG 545
             +++  LY  E   S +     A            LS      ++ ++++     K PG
Sbjct: 362 AVEYYQKLYSVEDVDSIVERLPSAGFTCLTREEISDLSKPFMSIDVENSMRGMGRFKAPG 421

Query: 546 PGALHPIFFHKCWTSINYSVLHTI 617
           P    P+F+  CW  +  SV + +
Sbjct: 422 PDGYQPVFYQDCWEVVGQSVTNFV 445


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score =  105 bits (262), Expect = 9e-21
 Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 3/200 (1%)
 Frame = +3

Query: 36  VWNREVYGNVHLKLCRICARIEGVQ*KIADSPSSNLARLESKLLSEYDELLTAEKLLWYT 215
           ++N +V+GN+  +  R+  R++GVQ  +    S     LE +L  EY+ +L  E++LWY 
Sbjct: 282 IFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQ 341

Query: 216 KSRVQRLQFLGANTRYFHTSTIIRRQRNCIKMIQDSAGAWLTEQPDICAHITQFFASLYC 395
           KSR Q ++    NT +FH  T+IRR+ N I  +Q   G   ++   +     ++F   +C
Sbjct: 342 KSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFC 401

Query: 396 SEA---SRSELRSPFPASLQPFEIATHLSLSNQISDSEITSALKSFKPLKTPGPGALHPI 566
                 SR       PA     +     SL++ I+  E+ +AL S KP K PGP   H I
Sbjct: 402 GSQIPYSRFFNEGRHPA----LDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCI 457

Query: 567 FFHKCWTSINYSVLHTIQQA 626
           FF + W  +   V H ++ A
Sbjct: 458 FFKQYWHIVGDDVFHLVRSA 477