BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00018181
         (3520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   473   0.0  
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   473   0.0  
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         471   0.0  
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   453   0.0  
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             464   0.0  

>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  473 bits (1216), Expect(3) = 0.0
 Identities = 242/488 (49%), Positives = 324/488 (66%), Gaps = 24/488 (4%)
 Frame = +2

Query: 1430 LDDKGEKCIFLGYSERTKGYKLFNPVTSVVISSRDVVLSEDESWDSTKTEKTKSILDI-- 1603
            LDDK EK IF+GY   +KGYKL+NP T   I SR++V  E+  WD    E+  +      
Sbjct: 713  LDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFE 772

Query: 1604 DDDPLSANNDDPDVLP-----SPETNSVSSISPRRNPTRTRIQHTRLQDYIVAANNVVLE 1768
            +D+P     + P   P     SP ++ +   S  R P    IQ      Y V  N    +
Sbjct: 773  EDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQEL----YEVTEN----Q 824

Query: 1769 EDVVNFALFAGCDPLTFDEASRDDGWIQAMDAEIQAIEKNNTWKLTSLPKGKKSIGVKWV 1948
            E++  F LFA C+P+ F EA     W  AMD EI++I+KN+TW+LTSLP G K+IGVKWV
Sbjct: 825  ENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWV 884

Query: 1949 YKSKYNKDNQVDKLKARLVVKGYKQKLGVDYDEVFAPVARMETIRMVIAMAAQMKWSIFQ 2128
            YK+K N   +V++ KARLV KGY Q+ G+DYDEVFAPVAR+ET+R++I++AAQ KW I Q
Sbjct: 885  YKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQ 944

Query: 2129 MDVKSAFLNGVLKEEVYVDQPTGYVKKGHEDKVLKLNKVLYGLKQAPQAWYTRIDSYFQ* 2308
            MDVKSAFLNG L+EEVY++QP GY+ KG EDKVL+L K LYGLKQAP+AW TRID YF+ 
Sbjct: 945  MDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKE 1004

Query: 2309 QG-----------------NILVVCLYVDDVMFTGNNSNMLDEFNKEMTNRFEMTDTRFM 2437
            +                  +IL+ CLYVDD++FTGNN +M +EF KEMT  FEMTD   M
Sbjct: 1005 KDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLM 1064

Query: 2438 SFFLGLEVMQTTEGIFLSQKKYVGDIFKKFKMKFYNPIKTPVETRLHLNKVGKGELVNAA 2617
            S++LG+EV Q   GIF++Q+ Y  ++ KKFKM   NP+ TP+E  + L+K  +GE V+  
Sbjct: 1065 SYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPT 1124

Query: 2618 EYRSLVGSLRYLTHTRPDIVFGVGLISQFMETPSEDHLQAAKRIMRHLKGTQTHGLFYTS 2797
             ++SLVGSLRYLT TRPDI++ VG++S++ME P+  H +AAKRI+R++KGT   GL Y++
Sbjct: 1125 TFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYST 1184

Query: 2798 VKRFQSGG 2821
               ++  G
Sbjct: 1185 TSDYKLVG 1192



 Score =  341 bits (874), Expect(3) = 0.0
 Identities = 204/571 (35%), Positives = 298/571 (52%), Gaps = 96/571 (16%)
 Frame = +3

Query: 6    EVISDYFTRVQTVVNELRSNGEILADTRIVEKIMRSLTEPFDYVVVAIEEGKYMSSLTID 185
            E++SDYF+RV TV N L+ NGE L D RI+EK++RSL   F+++V  IEE K + ++TI+
Sbjct: 129  ELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIE 188

Query: 186  GLKGSLSAYEFRMKHRKPCSLEHALRSKVVITXXXXXXXXXXXTPAQG------------ 329
             L GSL AYE + K +K   +E  L  ++                 +G            
Sbjct: 189  QLLGSLQAYEEKKK-KKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 330  --------------------GFPR-KTDKSIIQCFRCKVFGHYRSECKAKFAKKHVEHSN 446
                                G P+ + DKS ++C+ C  FGHY SECKA   KK  E +N
Sbjct: 248  RPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAN 307

Query: 447  YVE--LEEEEHLFFTCSDDDDEEHLNSWYLDTGCTNHMCGNKELFLNLDESITGVVNFGN 620
            YVE  ++EE+ L       D++E  + WYLD+G +NHMCG K +F  LDES+ G V  G+
Sbjct: 308  YVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGD 367

Query: 621  KSQVPIMG*GKVLLKLPS--YHFIYEVFYVPSLK*NLLSVGQLSVTGFRFIIERGVCTIE 794
            +S++ + G G +L++L +  + FI  V+Y+PS+K N+LS+GQL   G+   ++    +I 
Sbjct: 368  ESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIR 427

Query: 795  TKDDEVVGTIKMTDKRLFRLSLEPSAQCSLSAIATDDNWLWHFRYGHXXXXXXXXXXXXX 974
             ++  ++  + M+  R+F L++       L     +++WLWH R+GH             
Sbjct: 428  DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKE 487

Query: 975  MVTGLPLLDGVDRLCQSCVRGKQHRDSFPVGKSQRAYQQLQLVHSDICGPMQTVSHGGNR 1154
            MV GLP ++  +++C+ C+ GKQ + SFP   S RA + L+L+H+D+CGP++  S G + 
Sbjct: 488  MVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSN 547

Query: 1155 DFLTFIDDYN*KIWVYLLKQKSEAF--------------------------GKF--KEFK 1250
             FL FIDD++ K WVY LK+KSE F                          G+F  KEF 
Sbjct: 548  YFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFL 607

Query: 1251 AYVEN--------------QSG--------------SRLKVLRTD---WAEAVCCVVYIL 1337
             Y E+              Q+G              S LK  R     WAEAV C VY+L
Sbjct: 608  KYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLL 667

Query: 1338 NRCPTKSVLNMTPEEAWSGYKPDVTSLCIFG 1430
            NR PTKSV   TP+EAWSG K  V+ L +FG
Sbjct: 668  NRSPTKSVSGKTPQEAWSGRKSGVSHLRVFG 698



 Score =  188 bits (477), Expect(3) = 0.0
 Identities = 91/159 (57%), Positives = 112/159 (70%)
 Frame = +3

Query: 2805 DSNLVGYIDSDWAGDVEDRKSTSDFVFHIGSSVVYWSSKKQQVVALSTTEAEYMAATSCA 2984
            D  LVGY DSDW GDV+DRKSTS FVF+IG +   W SKKQ +V LST EAEY+AATSC 
Sbjct: 1187 DYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCV 1246

Query: 2985 SQVVWLRRLLNELHQQQYSPTTIYCDNRSAIALTKNPVFHGRSKHIDIKFHYI*DLATEG 3164
               +WLR LL EL   Q  PT I+ DN+SAIAL KNPVFH RSKHID ++HYI +  ++ 
Sbjct: 1247 CHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKK 1306

Query: 3165 KIVLDYCNTEEKIADIFTKLLNAEVFYKLKEKLGVHNSN 3281
             + L+Y  T +++ADIFTK L  E F K++  LGV  S+
Sbjct: 1307 DVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGVAKSS 1345


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  473 bits (1217), Expect(3) = 0.0
 Identities = 241/488 (49%), Positives = 326/488 (66%), Gaps = 24/488 (4%)
 Frame = +2

Query: 1430 LDDKGEKCIFLGYSERTKGYKLFNPVTSVVISSRDVVLSEDESWDSTKTEKTKSILDI-- 1603
            LDDK EK IF+GY   +KGYKL+NP T   I SR++V  E+  WD    E+  +      
Sbjct: 713  LDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFE 772

Query: 1604 DDDPLSANNDDPDVLP-----SPETNSVSSISPRRNPTRTRIQHTRLQDYIVAANNVVLE 1768
            +D+P     + P   P     SP ++ +   S  R P    IQ      Y V  N    +
Sbjct: 773  EDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQEL----YEVTEN----Q 824

Query: 1769 EDVVNFALFAGCDPLTFDEASRDDGWIQAMDAEIQAIEKNNTWKLTSLPKGKKSIGVKWV 1948
            E++  F LFA C+P+ F +A     W  AMD EI++I+KN+TW+LTSLP G K+IGVKWV
Sbjct: 825  ENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWV 884

Query: 1949 YKSKYNKDNQVDKLKARLVVKGYKQKLGVDYDEVFAPVARMETIRMVIAMAAQMKWSIFQ 2128
            YK+K N   +V++ KARLV KGY Q++G+DYDEVFAPVAR+ET+R++I++AAQ KW I Q
Sbjct: 885  YKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQ 944

Query: 2129 MDVKSAFLNGVLKEEVYVDQPTGYVKKGHEDKVLKLNKVLYGLKQAPQAWYTRIDSYFQ* 2308
            MDVKSAFLNG L+EEVY++QP GY+ KG EDKVL+L KVLYGLKQAP+AW TRID YF+ 
Sbjct: 945  MDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKE 1004

Query: 2309 QG-----------------NILVVCLYVDDVMFTGNNSNMLDEFNKEMTNRFEMTDTRFM 2437
            +                  +IL+ CLYVDD++FTGNN ++ +EF KEMT  FEMTD   M
Sbjct: 1005 KDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLM 1064

Query: 2438 SFFLGLEVMQTTEGIFLSQKKYVGDIFKKFKMKFYNPIKTPVETRLHLNKVGKGELVNAA 2617
            S++LG+EV Q   GIF++Q+ Y  ++ KKFKM   NP+ TP+E  + L+K  +GE V+  
Sbjct: 1065 SYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPT 1124

Query: 2618 EYRSLVGSLRYLTHTRPDIVFGVGLISQFMETPSEDHLQAAKRIMRHLKGTQTHGLFYTS 2797
             ++SLVGSLRYLT TRPDI++ VG++S++ME P+  H +AAKRI+R++KGT   GL Y++
Sbjct: 1125 TFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYST 1184

Query: 2798 VKRFQSGG 2821
               ++  G
Sbjct: 1185 TSDYKLVG 1192



 Score =  342 bits (876), Expect(3) = 0.0
 Identities = 204/571 (35%), Positives = 299/571 (52%), Gaps = 96/571 (16%)
 Frame = +3

Query: 6    EVISDYFTRVQTVVNELRSNGEILADTRIVEKIMRSLTEPFDYVVVAIEEGKYMSSLTID 185
            E++SDYF+RV TV N L+ NGE L D RI+EK++RSL   F+++V  IEE K + ++TI+
Sbjct: 129  ELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIE 188

Query: 186  GLKGSLSAYEFRMKHRKPCSLEHALRSKVVITXXXXXXXXXXXTPAQG------------ 329
             L GSL AYE + K +K   +E  L  ++                 +G            
Sbjct: 189  QLLGSLQAYEEKKK-KKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 330  --------------------GFPR-KTDKSIIQCFRCKVFGHYRSECKAKFAKKHVEHSN 446
                                G P+ + DKS ++C+ C  FGHY SECKA   KK  E +N
Sbjct: 248  RPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAN 307

Query: 447  YVE--LEEEEHLFFTCSDDDDEEHLNSWYLDTGCTNHMCGNKELFLNLDESITGVVNFGN 620
            YVE  ++EE+ L       D+++  + WYLD+G +NHMCG K +F  LDES+ G V  G+
Sbjct: 308  YVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGD 367

Query: 621  KSQVPIMG*GKVLLKLPS--YHFIYEVFYVPSLK*NLLSVGQLSVTGFRFIIERGVCTIE 794
            +S++ + G G +L++L +  + FI  V+Y+PS+K N+LS+GQL   G+   ++    +I 
Sbjct: 368  ESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIR 427

Query: 795  TKDDEVVGTIKMTDKRLFRLSLEPSAQCSLSAIATDDNWLWHFRYGHXXXXXXXXXXXXX 974
             ++  ++  + M+  R+F L++       L     +++WLWH R+GH             
Sbjct: 428  DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKE 487

Query: 975  MVTGLPLLDGVDRLCQSCVRGKQHRDSFPVGKSQRAYQQLQLVHSDICGPMQTVSHGGNR 1154
            MV GLP ++  +++C+ C+ GKQ + SFP   S RA + L+L+H+D+CGP++  S G + 
Sbjct: 488  MVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSN 547

Query: 1155 DFLTFIDDYN*KIWVYLLKQKSEAF--------------------------GKF--KEFK 1250
             FL FIDD++ K WVY LK+KSE F                          G+F  KEF 
Sbjct: 548  YFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFL 607

Query: 1251 AYVEN--------------QSG--------------SRLKVLRTD---WAEAVCCVVYIL 1337
             Y E+              Q+G              S LK  R     WAEAV C VY+L
Sbjct: 608  KYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLL 667

Query: 1338 NRCPTKSVLNMTPEEAWSGYKPDVTSLCIFG 1430
            NR PTKSV   TP+EAWSG KP V+ L +FG
Sbjct: 668  NRSPTKSVSGKTPQEAWSGRKPGVSHLRVFG 698



 Score =  186 bits (473), Expect(3) = 0.0
 Identities = 90/159 (56%), Positives = 111/159 (69%)
 Frame = +3

Query: 2805 DSNLVGYIDSDWAGDVEDRKSTSDFVFHIGSSVVYWSSKKQQVVALSTTEAEYMAATSCA 2984
            D  LVGY DSDW GDV+DRKSTS FVF+IG +   W SKKQ +V LST EAEY+AATSC 
Sbjct: 1187 DYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCV 1246

Query: 2985 SQVVWLRRLLNELHQQQYSPTTIYCDNRSAIALTKNPVFHGRSKHIDIKFHYI*DLATEG 3164
               +WLR LL EL   Q  PT I+ DN+SAIAL KNPVFH RSKHID ++HYI +  ++ 
Sbjct: 1247 CHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKK 1306

Query: 3165 KIVLDYCNTEEKIADIFTKLLNAEVFYKLKEKLGVHNSN 3281
             + L+Y  T +++AD FTK L  E F K++  LGV  S+
Sbjct: 1307 DVQLEYVKTHDQVADFFTKPLKRENFIKMRSLLGVAKSS 1345


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  471 bits (1213), Expect(3) = 0.0
 Identities = 240/488 (49%), Positives = 326/488 (66%), Gaps = 24/488 (4%)
 Frame = +2

Query: 1430 LDDKGEKCIFLGYSERTKGYKLFNPVTSVVISSRDVVLSEDESWDSTKTEKTKSILDI-- 1603
            LDDK EK IF+GY   +KGYKL+NP T   I SR++V  E+  WD    E+  +      
Sbjct: 713  LDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFE 772

Query: 1604 DDDPLSANNDDPDVLP-----SPETNSVSSISPRRNPTRTRIQHTRLQDYIVAANNVVLE 1768
            +D+P     + P   P     SP ++ +   S  R P    IQ      Y V  N    +
Sbjct: 773  EDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQEL----YEVTEN----Q 824

Query: 1769 EDVVNFALFAGCDPLTFDEASRDDGWIQAMDAEIQAIEKNNTWKLTSLPKGKKSIGVKWV 1948
            E++  F LFA C+P+ F +A     W  AMD EI++I+KN+TW+LTSLP G K+IGVKWV
Sbjct: 825  ENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWV 884

Query: 1949 YKSKYNKDNQVDKLKARLVVKGYKQKLGVDYDEVFAPVARMETIRMVIAMAAQMKWSIFQ 2128
            YK+K N   +V++ KARLV KGY Q++G+DYDEVFAPVAR+ET+R++I++AAQ KW I Q
Sbjct: 885  YKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQ 944

Query: 2129 MDVKSAFLNGVLKEEVYVDQPTGYVKKGHEDKVLKLNKVLYGLKQAPQAWYTRIDSYFQ* 2308
            MDVKSAFLNG L+EEVY++QP GY+ KG EDKVL+L KVLYGLKQAP+AW TRID YF+ 
Sbjct: 945  MDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKE 1004

Query: 2309 QG-----------------NILVVCLYVDDVMFTGNNSNMLDEFNKEMTNRFEMTDTRFM 2437
            +                  +IL+ CLYVDD++FTGNN ++ +EF KEMT  FEMTD   M
Sbjct: 1005 KDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLM 1064

Query: 2438 SFFLGLEVMQTTEGIFLSQKKYVGDIFKKFKMKFYNPIKTPVETRLHLNKVGKGELVNAA 2617
            S++LG+EV Q   GIF++Q+ Y  ++ KKFK+   NP+ TP+E  + L+K  +GE V+  
Sbjct: 1065 SYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPT 1124

Query: 2618 EYRSLVGSLRYLTHTRPDIVFGVGLISQFMETPSEDHLQAAKRIMRHLKGTQTHGLFYTS 2797
             ++SLVGSLRYLT TRPDI++ VG++S++ME P+  H +AAKRI+R++KGT   GL Y++
Sbjct: 1125 TFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYST 1184

Query: 2798 VKRFQSGG 2821
               ++  G
Sbjct: 1185 TSDYKLVG 1192



 Score =  339 bits (870), Expect(3) = 0.0
 Identities = 202/571 (35%), Positives = 299/571 (52%), Gaps = 96/571 (16%)
 Frame = +3

Query: 6    EVISDYFTRVQTVVNELRSNGEILADTRIVEKIMRSLTEPFDYVVVAIEEGKYMSSLTID 185
            E++SDYF+RV TV N L+ NGE L D RI+EK++RSL   F+++V  IEE K + ++TI+
Sbjct: 129  ELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIE 188

Query: 186  GLKGSLSAYEFRMKHRKPCSLEHALRSKVVITXXXXXXXXXXXTPAQG------------ 329
             L GSL AYE + K ++  + E  L  ++                 +G            
Sbjct: 189  QLLGSLQAYEEKKKKKEDIA-EQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 330  --------------------GFPR-KTDKSIIQCFRCKVFGHYRSECKAKFAKKHVEHSN 446
                                G P+ + DKS ++C+ C  FGHY SECKA   KK  E ++
Sbjct: 248  RPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAH 307

Query: 447  YVE--LEEEEHLFFTCSDDDDEEHLNSWYLDTGCTNHMCGNKELFLNLDESITGVVNFGN 620
            YVE  ++EE+ L       D+++  + WYLD+G +NHMCG K +F  LDES+ G V  G+
Sbjct: 308  YVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGD 367

Query: 621  KSQVPIMG*GKVLLKLPS--YHFIYEVFYVPSLK*NLLSVGQLSVTGFRFIIERGVCTIE 794
            +S++ + G G +L++L +  + FI  V+Y+PS+K N+LS+GQL   G+   ++    +I 
Sbjct: 368  ESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIR 427

Query: 795  TKDDEVVGTIKMTDKRLFRLSLEPSAQCSLSAIATDDNWLWHFRYGHXXXXXXXXXXXXX 974
             ++  ++  + M+  R+F L++       L     +++WLWH R+GH             
Sbjct: 428  DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKE 487

Query: 975  MVTGLPLLDGVDRLCQSCVRGKQHRDSFPVGKSQRAYQQLQLVHSDICGPMQTVSHGGNR 1154
            MV GLP ++  +++C+ C+ GKQ + SFP   S RA + L+L+H+D+CGP++  S G + 
Sbjct: 488  MVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSN 547

Query: 1155 DFLTFIDDYN*KIWVYLLKQKSEAF--------------------------GKF--KEFK 1250
             FL FIDD++ K WVY LK+KSE F                          G+F  KEF 
Sbjct: 548  YFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFL 607

Query: 1251 AYVEN--------------QSG--------------SRLKVLRTD---WAEAVCCVVYIL 1337
             Y E+              Q+G              S LK  R     WAEAV C VY+L
Sbjct: 608  KYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLL 667

Query: 1338 NRCPTKSVLNMTPEEAWSGYKPDVTSLCIFG 1430
            NR PTKSV   TP+EAWSG KP V+ L +FG
Sbjct: 668  NRSPTKSVSGKTPQEAWSGRKPGVSHLRVFG 698



 Score =  186 bits (473), Expect(3) = 0.0
 Identities = 90/159 (56%), Positives = 111/159 (69%)
 Frame = +3

Query: 2805 DSNLVGYIDSDWAGDVEDRKSTSDFVFHIGSSVVYWSSKKQQVVALSTTEAEYMAATSCA 2984
            D  LVGY DSDW GDV+DRKSTS FVF+IG +   W SKKQ +V LST EAEY+AATSC 
Sbjct: 1187 DYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCV 1246

Query: 2985 SQVVWLRRLLNELHQQQYSPTTIYCDNRSAIALTKNPVFHGRSKHIDIKFHYI*DLATEG 3164
               +WLR LL EL   Q  PT I+ DN+SAIAL KNPVFH RSKHID ++HYI +  ++ 
Sbjct: 1247 CHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKK 1306

Query: 3165 KIVLDYCNTEEKIADIFTKLLNAEVFYKLKEKLGVHNSN 3281
             + L+Y  T +++AD FTK L  E F K++  LGV  S+
Sbjct: 1307 DVQLEYVKTHDQVADFFTKPLKRENFIKMRSLLGVAKSS 1345


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  453 bits (1166), Expect(3) = 0.0
 Identities = 232/482 (48%), Positives = 314/482 (65%), Gaps = 18/482 (3%)
 Frame = +2

Query: 1430 LDDKGEKCIFLGYSERTKGYKLFNPVTSVVISSRDVVLSEDESWDSTKTEKTKSILD-ID 1606
            LDDK EK IF+GY   +KGYKL+NP T   I SR++V  E+  WD    E+  +     +
Sbjct: 713  LDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFE 772

Query: 1607 DDPLSANNDDPDVLPSPETNSVSSISPRRNPTRTRIQHTRLQDYIVAANNVVLEEDVVNF 1786
            +D      ++P   PS E  +     P  +PT ++I+                       
Sbjct: 773  EDKPEPTREEP---PSEEPTT-----PPTSPTSSQIEEK--------------------- 803

Query: 1787 ALFAGCDPLTFDEASRDDGWIQAMDAEIQAIEKNNTWKLTSLPKGKKSIGVKWVYKSKYN 1966
                 C+P+ F EA     W  AMD EI++I+KN+TW+LTSLP G K+IGVKWVYK+K N
Sbjct: 804  -----CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKN 858

Query: 1967 KDNQVDKLKARLVVKGYKQKLGVDYDEVFAPVARMETIRMVIAMAAQMKWSIFQMDVKSA 2146
               +V++ KARLV KGY Q+ G+DYDEVFAPVAR+ET+R++I++AAQ KW I QMDVKSA
Sbjct: 859  SKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSA 918

Query: 2147 FLNGVLKEEVYVDQPTGYVKKGHEDKVLKLNKVLYGLKQAPQAWYTRIDSYFQ*QG---- 2314
            FLNG L+EEVY++QP GY+ KG EDKVL+L K LYGLKQAP+AW TRID YF+ +     
Sbjct: 919  FLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKC 978

Query: 2315 -------------NILVVCLYVDDVMFTGNNSNMLDEFNKEMTNRFEMTDTRFMSFFLGL 2455
                         +IL+ CLYVDD++FTGNN +M +EF KEMT  FEMTD   MS++LG+
Sbjct: 979  PYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGI 1038

Query: 2456 EVMQTTEGIFLSQKKYVGDIFKKFKMKFYNPIKTPVETRLHLNKVGKGELVNAAEYRSLV 2635
            EV Q   GIF++Q+ Y  ++ KKFKM   NP+ TP+E  + L+K  +GE V+   ++SLV
Sbjct: 1039 EVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLV 1098

Query: 2636 GSLRYLTHTRPDIVFGVGLISQFMETPSEDHLQAAKRIMRHLKGTQTHGLFYTSVKRFQS 2815
            GSLRYLT TRPDI++ VG++S++ME P+  H +AAKRI+R++KGT   GL Y++   ++ 
Sbjct: 1099 GSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKL 1158

Query: 2816 GG 2821
             G
Sbjct: 1159 VG 1160



 Score =  343 bits (880), Expect(3) = 0.0
 Identities = 205/571 (35%), Positives = 299/571 (52%), Gaps = 96/571 (16%)
 Frame = +3

Query: 6    EVISDYFTRVQTVVNELRSNGEILADTRIVEKIMRSLTEPFDYVVVAIEEGKYMSSLTID 185
            E++SDYF+RV TV N L+ NGE L D RI+EK++RSL   F+++V  IEE K + ++TI+
Sbjct: 129  ELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIE 188

Query: 186  GLKGSLSAYEFRMKHRKPCSLEHALRSKVVITXXXXXXXXXXXTPAQG------------ 329
             L GSL AYE + K +K   +E  L  ++                 +G            
Sbjct: 189  QLLGSLQAYEEKKK-KKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 330  --------------------GFPR-KTDKSIIQCFRCKVFGHYRSECKAKFAKKHVEHSN 446
                                G P+ + DKS ++C+ C  FGHY SECKA   KK  E +N
Sbjct: 248  RPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAN 307

Query: 447  YVE--LEEEEHLFFTCSDDDDEEHLNSWYLDTGCTNHMCGNKELFLNLDESITGVVNFGN 620
            YVE  ++EE+ L       D++E  + WYLD+G +NHMCG K +F  LDES+ G V  G+
Sbjct: 308  YVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGD 367

Query: 621  KSQVPIMG*GKVLLKLPS--YHFIYEVFYVPSLK*NLLSVGQLSVTGFRFIIERGVCTIE 794
            +S++ + G G +L++L +  + FI  V+Y+PS+K N+LS+GQL   G+   ++    +I 
Sbjct: 368  ESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIR 427

Query: 795  TKDDEVVGTIKMTDKRLFRLSLEPSAQCSLSAIATDDNWLWHFRYGHXXXXXXXXXXXXX 974
             ++  ++  + M+  R+F L++       L     +++WLWH R+GH             
Sbjct: 428  DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKE 487

Query: 975  MVTGLPLLDGVDRLCQSCVRGKQHRDSFPVGKSQRAYQQLQLVHSDICGPMQTVSHGGNR 1154
            MV GLP ++  +++C+ C+ GKQ + SFP   S RA + L+L+H+D+CGP++  S G + 
Sbjct: 488  MVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSN 547

Query: 1155 DFLTFIDDYN*KIWVYLLKQKSEAF--------------------------GKF--KEFK 1250
             FL FIDD++ K WVY LK+KSE F                          G+F  KEF 
Sbjct: 548  YFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFL 607

Query: 1251 AYVEN--------------QSG--------------SRLKVLRTD---WAEAVCCVVYIL 1337
             Y E+              Q+G              S LK  R     WAEAV C VY+L
Sbjct: 608  KYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLL 667

Query: 1338 NRCPTKSVLNMTPEEAWSGYKPDVTSLCIFG 1430
            NR PTKSV   TP+EAWSG KP V+ L +FG
Sbjct: 668  NRSPTKSVSGKTPQEAWSGRKPGVSHLRVFG 698



 Score =  188 bits (477), Expect(3) = 0.0
 Identities = 91/159 (57%), Positives = 112/159 (70%)
 Frame = +3

Query: 2805 DSNLVGYIDSDWAGDVEDRKSTSDFVFHIGSSVVYWSSKKQQVVALSTTEAEYMAATSCA 2984
            D  LVGY DSDW GDV+DRKSTS FVF+IG +   W SKKQ +V LST EAEY+AATSC 
Sbjct: 1155 DYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCV 1214

Query: 2985 SQVVWLRRLLNELHQQQYSPTTIYCDNRSAIALTKNPVFHGRSKHIDIKFHYI*DLATEG 3164
               +WLR LL EL   Q  PT I+ DN+SAIAL KNPVFH RSKHID ++HYI +  ++ 
Sbjct: 1215 CHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKK 1274

Query: 3165 KIVLDYCNTEEKIADIFTKLLNAEVFYKLKEKLGVHNSN 3281
             + L+Y  T +++ADIFTK L  E F K++  LGV  S+
Sbjct: 1275 DVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGVAKSS 1313


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  464 bits (1194), Expect(3) = 0.0
 Identities = 232/483 (48%), Positives = 319/483 (66%), Gaps = 19/483 (3%)
 Frame = +2

Query: 1430 LDDKGEKCIFLGYSERTKGYKLFNPVTSVVISSRDVVLSEDESWDSTKTEKTKSILDI-- 1603
            LDDK EK IF+GY   +KGYKL+NP T   I SR++V  E+  WD    E+  +      
Sbjct: 652  LDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFE 711

Query: 1604 DDDPLSANNDDPDVLPSPETNSVSSISPRRNPTRTRIQHTRLQDYIVAANNVVLEEDVVN 1783
            +D+P     + P   P+    S++S     + +    +   +Q+      N   +E++  
Sbjct: 712  EDEPEPTREEPPSEEPTTRPTSLTSSQIEESSSERTPRFRSIQELYEVTEN---QENLTL 768

Query: 1784 FALFAGCDPLTFDEASRDDGWIQAMDAEIQAIEKNNTWKLTSLPKGKKSIGVKWVYKSKY 1963
            F LFA C+P+ F EA     W  AMD EI++I+KN+TW+LTSLP G K+IGVKWVYK+K 
Sbjct: 769  FCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKK 828

Query: 1964 NKDNQVDKLKARLVVKGYKQKLGVDYDEVFAPVARMETIRMVIAMAAQMKWSIFQMDVKS 2143
            N   +V++ KARLV KGY Q+ G+DYDEVFAPVAR+ET+R++I++AAQ KW I QMD K 
Sbjct: 829  NSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDFKL 888

Query: 2144 AFLNGVLKEEVYVDQPTGYVKKGHEDKVLKLNKVLYGLKQAPQAWYTRIDSYFQ*QG--- 2314
            AFLNG  +EEVY++QP GY+ KG EDKVL+L K LYGLKQAP+AW TRID YF+ +    
Sbjct: 889  AFLNGDFEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIK 948

Query: 2315 --------------NILVVCLYVDDVMFTGNNSNMLDEFNKEMTNRFEMTDTRFMSFFLG 2452
                          +IL+ CLYVDD++FTGNN +M +EF KEMT  FEMTD   MS++LG
Sbjct: 949  CPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLG 1008

Query: 2453 LEVMQTTEGIFLSQKKYVGDIFKKFKMKFYNPIKTPVETRLHLNKVGKGELVNAAEYRSL 2632
            +EV Q    IF++Q+ Y  ++ KKFKM   NP+ TP+E  + L+K  +GE V+   ++SL
Sbjct: 1009 IEVKQEDNRIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSL 1068

Query: 2633 VGSLRYLTHTRPDIVFGVGLISQFMETPSEDHLQAAKRIMRHLKGTQTHGLFYTSVKRFQ 2812
            VGSLRYLT TRPDI++ VG++S++ME P+  H +AAKRI+R++KGT   GL Y++   ++
Sbjct: 1069 VGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYK 1128

Query: 2813 SGG 2821
              G
Sbjct: 1129 LVG 1131



 Score =  286 bits (731), Expect(3) = 0.0
 Identities = 179/515 (34%), Positives = 273/515 (53%), Gaps = 40/515 (7%)
 Frame = +3

Query: 6    EVISDYFTRVQTVVNELRSNGEILADTRIVEKIMRSLTEPFDYVVVAIEEGKYMSSLTID 185
            E++SDYF+RV TV N L+ NGE L D RI+EK++RSL   F+++V  IEE K + ++TI+
Sbjct: 129  ELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIE 188

Query: 186  GLKGSLSAYEFRMKHRKPCSLEHALRSKVVITXXXXXXXXXXXTPAQGGFPRKTDKSIIQ 365
             L GSL AYE + K +K   +E  L  ++                  GG  R   +    
Sbjct: 189  QLLGSLQAYEEKKK-KKEDIVEQVLNMRITKEENGQSYQRRG-----GGEVRGRGRGGYG 242

Query: 366  CFRCKVFGHYRSECKAKFAKKHVEHSNYVE--LEEEEHLFFTCSDDDDEEHLNSWYLDTG 539
              R        +  +A   KK  E +NYVE  ++EE+ L       D++E  + WYLD+G
Sbjct: 243  NGRGWRPHEDNTNQRAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSG 302

Query: 540  CTNHMCGNKELFLNLDESITGVVNFGNKSQVPIMG*GKVLLKLPS--YHFIYEVFYVPSL 713
             +NHMCG K +F  LDES+ G V  G++S++ + G G +L++L +  + FI  V+Y+PS+
Sbjct: 303  ASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSM 362

Query: 714  K*NLLSVGQLSVTGFRFIIERGVCTIETKDDEVVGTIKMTDKRLFRLSLEPSAQCSLSAI 893
            K N+LS+GQL   G+   ++    +I  ++  ++  + M+  R+F L++       L   
Sbjct: 363  KTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMC 422

Query: 894  ATDDNWLWHFRYGHXXXXXXXXXXXXXMVTGLPLLDGVDRLCQSCVRGKQHRDSFPVGKS 1073
              +++WLWH R+GH             MV GLP ++  +++C+ C+ GKQ + SFP   S
Sbjct: 423  YKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESS 482

Query: 1074 QRAYQQLQLVHSDICGPMQTVSHGGN---RDFLTFIDDYN*KIWVYLLKQKSEAFGKF-- 1238
             RA + L+L+H+D+CGP++  S   +   + F  F      +  + +   +S+  G+F  
Sbjct: 483  SRAQKPLELIHTDVCGPIKPKSLEKSEVFKIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 542

Query: 1239 KEFKAYVEN--------------QSG--------------SRLKVLRTD---WAEAVCCV 1325
            KEF  Y E+              Q+G              S LK  R     WAEAV C 
Sbjct: 543  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 602

Query: 1326 VYILNRCPTKSVLNMTPEEAWSGYKPDVTSLCIFG 1430
            VY+LNR PTKSV   TP+EAWSG KP V+ L +FG
Sbjct: 603  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFG 637



 Score =  185 bits (469), Expect(3) = 0.0
 Identities = 90/159 (56%), Positives = 111/159 (69%)
 Frame = +3

Query: 2805 DSNLVGYIDSDWAGDVEDRKSTSDFVFHIGSSVVYWSSKKQQVVALSTTEAEYMAATSCA 2984
            D  LVGY DSDW  DV+DRKSTS FVF+IG +   W SKKQ +V LST EAEY+AATSC 
Sbjct: 1126 DYKLVGYSDSDWGRDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCV 1185

Query: 2985 SQVVWLRRLLNELHQQQYSPTTIYCDNRSAIALTKNPVFHGRSKHIDIKFHYI*DLATEG 3164
               +WLR LL EL   Q  PT I+ DN+SAIAL KNPVFH RSKHID ++HYI +  ++ 
Sbjct: 1186 CHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKK 1245

Query: 3165 KIVLDYCNTEEKIADIFTKLLNAEVFYKLKEKLGVHNSN 3281
             + L+Y  T +++ADIFTK L  E F K++  LGV  S+
Sbjct: 1246 DVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGVAKSS 1284