BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00017868
         (913 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   138   2e-30
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   138   2e-30
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   132   1e-28
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   112   2e-22
gb|ABD96891.1| hypothetical protein [Cleome spinosa]                   99   1e-18

>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  138 bits (348), Expect = 2e-30
 Identities = 95/225 (42%), Positives = 123/225 (54%), Gaps = 3/225 (1%)
 Frame = +3

Query: 246 INFSLKIEPFVHPLDKPLKNLSKPPQNSPIMWRNIAKQVSSRTLSSKLFCLNNKINYLSS 425
           I+ ++K+  F    DKP      P  NSPIMWRNI KQ+SSRT    LF   N+      
Sbjct: 8   ISLTIKLNQFT---DKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRT----- 59

Query: 426 FYSSKRFSGLSQDLIFIHSFKCRP--QDFCSYVLDSEYPKKGLRNFCQFSSNDEFFSRPK 599
            YS   F G  QD IF  + K R      CS ++       G +N  ++   DEF SRP 
Sbjct: 60  -YS---FLGFGQDSIFKDNTKFRSLIPISCSNIV------MGFQNLGEYLPGDEFLSRPL 109

Query: 600 LYNLKNDIKNYGLCPKRYASVAEAVEVSNTDVDE-VGVLHXXXXXXXXXXXXXXXLLKEL 776
           +   KN + N   C K YASVAEAV VS+TD +E V V+                LL EL
Sbjct: 110 I---KNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHE-----------LLTEL 155

Query: 777 RSQERRQSSAKRRRQFRIACGMSHKKYRTLKRRQVKIETEAWEQA 911
           + +E++Q + +RR+Q  +  GM H+KY+TLKRRQVK+ETEAWEQA
Sbjct: 156 KKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQA 200


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  138 bits (348), Expect = 2e-30
 Identities = 95/225 (42%), Positives = 123/225 (54%), Gaps = 3/225 (1%)
 Frame = +3

Query: 246 INFSLKIEPFVHPLDKPLKNLSKPPQNSPIMWRNIAKQVSSRTLSSKLFCLNNKINYLSS 425
           I+ ++K+  F    DKP      P  NSPIMWRNI KQ+SSRT    LF   N+      
Sbjct: 8   ISLTIKLNQFT---DKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRT----- 59

Query: 426 FYSSKRFSGLSQDLIFIHSFKCRP--QDFCSYVLDSEYPKKGLRNFCQFSSNDEFFSRPK 599
            YS   F G  QD IF  + K R      CS ++       G +N  ++   DEF SRP 
Sbjct: 60  -YS---FLGFGQDSIFKDNTKFRSLIPISCSNIV------MGFQNLGEYLPGDEFLSRPL 109

Query: 600 LYNLKNDIKNYGLCPKRYASVAEAVEVSNTDVDE-VGVLHXXXXXXXXXXXXXXXLLKEL 776
           +   KN + N   C K YASVAEAV VS+TD +E V V+                LL EL
Sbjct: 110 I---KNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHE-----------LLTEL 155

Query: 777 RSQERRQSSAKRRRQFRIACGMSHKKYRTLKRRQVKIETEAWEQA 911
           + +E++Q + +RR+Q  +  GM H+KY+TLKRRQVK+ETEAWEQA
Sbjct: 156 KKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQA 200


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  132 bits (332), Expect = 1e-28
 Identities = 94/225 (41%), Positives = 121/225 (53%), Gaps = 3/225 (1%)
 Frame = +3

Query: 246 INFSLKIEPFVHPLDKPLKNLSKPPQNSPIMWRNIAKQVSSRTLSSKLFCLNNKINYLSS 425
           I+ ++K+  F    DKP         NSPIMWRNI KQ+SSRT    LF   N+      
Sbjct: 8   ISLTIKLNQFT---DKPTGLDINRYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRT----- 59

Query: 426 FYSSKRFSGLSQDLIFIHSFKCRP--QDFCSYVLDSEYPKKGLRNFCQFSSNDEFFSRPK 599
            YS   F G  QD +F  + K R      CS ++       G +N  ++   DEF SRP 
Sbjct: 60  -YS---FLGFGQDSVFKDNTKFRSLIPISCSNIV------MGFQNLGEYLPGDEFLSRPL 109

Query: 600 LYNLKNDIKNYGLCPKRYASVAEAVEVSNTDVDE-VGVLHXXXXXXXXXXXXXXXLLKEL 776
           L N  N   N   C K YASVAEAV VS+TD +E V V+                LL EL
Sbjct: 110 LKNQVNS--NDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQE-----------LLTEL 156

Query: 777 RSQERRQSSAKRRRQFRIACGMSHKKYRTLKRRQVKIETEAWEQA 911
           + +E++Q + +RR+Q  +  GM H+KY+TLKRRQVK+ETEAWEQA
Sbjct: 157 KKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQA 201


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score =  112 bits (279), Expect = 2e-22
 Identities = 81/212 (38%), Positives = 106/212 (50%), Gaps = 4/212 (1%)
 Frame = +3

Query: 288 DKPLKNLSKPPQNSPIMWRNIAKQVSSRTLSSKLFCLNNKINYLSSFYSSKRFS--GLSQ 461
           +KP      P +   +MWRNIAK+   R           K  YL S   S+R+S  G SQ
Sbjct: 24  EKPTNFRPNPLKKPTVMWRNIAKRAIPRA--------PRKCVYLDSQPLSRRYSFLGFSQ 75

Query: 462 DLIF--IHSFKCRPQDFCSYVLDSEYPKKGLRNFCQFSSNDEFFSRPKLYNLKNDIKNYG 635
           DLIF  I  F       CS    S + + G R   + SS ++   RP    L+N +   G
Sbjct: 76  DLIFPEIMKFGTFEPSSCS---SSGFSEMGFRRIGEISSREDAVGRPSFGCLRNQMGFSG 132

Query: 636 LCPKRYASVAEAVEVSNTDVDEVGVLHXXXXXXXXXXXXXXXLLKELRSQERRQSSAKRR 815
            CPK YASVAEAV  S+TDV+E                    LL E++ +E+RQ + KRR
Sbjct: 133 FCPKSYASVAEAV--SSTDVEE----------DVSASDEIQELLGEMKKEEKRQVNFKRR 180

Query: 816 RQFRIACGMSHKKYRTLKRRQVKIETEAWEQA 911
            + ++  GM   +Y  L+RRQVKIETEAWE A
Sbjct: 181 EKLKMERGMEQGRYLRLRRRQVKIETEAWELA 212


>gb|ABD96891.1| hypothetical protein [Cleome spinosa]
          Length = 1021

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 71/210 (33%), Positives = 101/210 (48%)
 Frame = +3

Query: 282 PLDKPLKNLSKPPQNSPIMWRNIAKQVSSRTLSSKLFCLNNKINYLSSFYSSKRFSGLSQ 461
           PLDKPL +   P   S  MWRNIAKQ  SR+      C             S+   G S 
Sbjct: 22  PLDKPLISSRNPVVQSSAMWRNIAKQTISRSPVRLSVCRQ-----------SRGLLGFSS 70

Query: 462 DLIFIHSFKCRPQDFCSYVLDSEYPKKGLRNFCQFSSNDEFFSRPKLYNLKNDIKNYGLC 641
           + IF   F  RP      +  S +   G    C+  +  +F  RP    LK++   +   
Sbjct: 71  ESIFPEIFIFRPS-VIGPISSSGFHDMGYSRTCEIPAPGDFSGRPGFGFLKDECCFHRFS 129

Query: 642 PKRYASVAEAVEVSNTDVDEVGVLHXXXXXXXXXXXXXXXLLKELRSQERRQSSAKRRRQ 821
           P+ Y + AEAV  S+TD++E   +                LL+E++ +E+++    RR +
Sbjct: 130 PRSYVNAAEAV--SSTDIEEDASV----------VDEVQELLREMKKEEKKEKVHLRRVK 177

Query: 822 FRIACGMSHKKYRTLKRRQVKIETEAWEQA 911
            +   GM  KKY++LKRRQVKIETEAWE+A
Sbjct: 178 RQEDLGMLEKKYQSLKRRQVKIETEAWEKA 207