BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00017845
         (686 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Sela...    68   2e-24
ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Sela...    68   2e-24
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca...    79   6e-18
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...    79   6e-18
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...    76   6e-18

>ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
           gi|300160135|gb|EFJ26753.1| hypothetical protein
           SELMODRAFT_148107 [Selaginella moellendorffii]
          Length = 1178

 Score = 67.8 bits (164), Expect(3) = 2e-24
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = -2

Query: 199 SFQTIYKIGFGQIYLSKPMMIESDGETATLFPKAARLRN 83
           S +T +KI FGQIYLSKPMM ESDGETATLFPKAARLRN
Sbjct: 68  SGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRN 106



 Score = 62.0 bits (149), Expect(3) = 2e-24
 Identities = 27/41 (65%), Positives = 36/41 (87%)
 Frame = -3

Query: 396 RRLDSFDEFIQNNMQKIVDESADIEIRP*SQHNPGHQPDFA 274
           ++LDSFDEFIQN MQ+IVDES++IEI+P SQHNPG   +++
Sbjct: 28  QQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNPGRNNEYS 68



 Score = 28.5 bits (62), Expect(3) = 2e-24
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 83  SASLYVDVRKRVINKGYDGE*VTETQD 3
           SA LY D+ K V  KG DGE  TE ++
Sbjct: 110 SAPLYADIIKYVTRKGEDGEEDTEQEE 136


>ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
           gi|300159830|gb|EFJ26449.1| hypothetical protein
           SELMODRAFT_172903 [Selaginella moellendorffii]
          Length = 1178

 Score = 67.8 bits (164), Expect(3) = 2e-24
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = -2

Query: 199 SFQTIYKIGFGQIYLSKPMMIESDGETATLFPKAARLRN 83
           S +T +KI FGQIYLSKPMM ESDGETATLFPKAARLRN
Sbjct: 68  SGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRN 106



 Score = 62.0 bits (149), Expect(3) = 2e-24
 Identities = 27/41 (65%), Positives = 36/41 (87%)
 Frame = -3

Query: 396 RRLDSFDEFIQNNMQKIVDESADIEIRP*SQHNPGHQPDFA 274
           ++LDSFDEFIQN MQ+IVDES++IEI+P SQHNPG   +++
Sbjct: 28  QQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNPGRNNEYS 68



 Score = 28.5 bits (62), Expect(3) = 2e-24
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 83  SASLYVDVRKRVINKGYDGE*VTETQD 3
           SA LY D+ K V  KG DGE  TE ++
Sbjct: 110 SAPLYADIIKYVTRKGEDGEEDTEQEE 136


>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 1213

 Score = 71.6 bits (174), Expect(2) = 6e-18
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = -2

Query: 193 QTIYKIGFGQIYLSKPMMIESDGETATLFPKAARLRN 83
           +TIYKI FGQIYLSKPMM ESDGETATLFPKAARLRN
Sbjct: 86  ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 122



 Score = 45.1 bits (105), Expect(2) = 6e-18
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = -1

Query: 83  SASLYVDVRKRVINKGYDGE*VTETQD 3
           SA LYVDV KRVI KG+DGE VTETQD
Sbjct: 126 SAPLYVDVSKRVIKKGHDGEEVTETQD 152



 Score = 79.0 bits (193), Expect = 8e-13
 Identities = 39/55 (70%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
 Frame = -3

Query: 396 RRLDSFDEFIQNNMQKIVDESADIEIRP*SQHNPGHQPDFAE-VYLLILDTFYFS 235
           ++LDSFDEFIQN MQ+IVDESADIEIRP SQHNPGHQ DFAE +Y +     Y S
Sbjct: 45  QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLS 99


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score = 71.6 bits (174), Expect(2) = 6e-18
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = -2

Query: 193 QTIYKIGFGQIYLSKPMMIESDGETATLFPKAARLRN 83
           +TIYKI FGQIYLSKPMM ESDGETATLFPKAARLRN
Sbjct: 91  ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 127



 Score = 45.1 bits (105), Expect(2) = 6e-18
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = -1

Query: 83  SASLYVDVRKRVINKGYDGE*VTETQD 3
           SA LYVDV KRVI KG+DGE VTETQD
Sbjct: 131 SAPLYVDVSKRVIKKGHDGEEVTETQD 157



 Score = 79.0 bits (193), Expect = 8e-13
 Identities = 39/55 (70%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
 Frame = -3

Query: 396 RRLDSFDEFIQNNMQKIVDESADIEIRP*SQHNPGHQPDFAE-VYLLILDTFYFS 235
           ++LDSFDEFIQN MQ+IVDESADIEIRP SQHNPG QPDFAE +Y +     Y S
Sbjct: 50  QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPDFAETIYKISFGQIYLS 104


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Cucumis sativus] gi|449479313|ref|XP_004155566.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB2-like [Cucumis sativus]
          Length = 1199

 Score = 71.6 bits (174), Expect(2) = 6e-18
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = -2

Query: 193 QTIYKIGFGQIYLSKPMMIESDGETATLFPKAARLRN 83
           +TIYKI FGQIYLSKPMM ESDGETATLFPKAARLRN
Sbjct: 90  ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 126



 Score = 45.1 bits (105), Expect(2) = 6e-18
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = -1

Query: 83  SASLYVDVRKRVINKGYDGE*VTETQD 3
           SA LYVDV KRVI KG+DGE VTETQD
Sbjct: 130 SAPLYVDVSKRVIKKGHDGEEVTETQD 156



 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 38/55 (69%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -3

Query: 396 RRLDSFDEFIQNNMQKIVDESADIEIRP*SQHNPGHQPDFAE-VYLLILDTFYFS 235
           ++LDSFDEFIQN MQ+IVDESADIEIRP SQHNPGHQ D AE +Y +     Y S
Sbjct: 49  QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLS 103