BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00017677
         (954 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97311.1| retrotransposon protein, putative, Ty3-gypsy subc...    88   3e-15
gb|AAU44292.1| putative polyprotein [Oryza sativa Japonica Group]      88   3e-15
gb|AAX96434.1| retrotransposon protein, putative, Ty3-gypsy sub-...    87   4e-15
gb|ABA98546.2| retrotransposon protein, putative, Ty3-gypsy subc...    85   2e-14
gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subc...    85   3e-14

>gb|ABA97311.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1475

 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 79/313 (25%), Positives = 115/313 (36%), Gaps = 9/313 (2%)
 Frame = -2

Query: 914 PITWVRFGELFRQNFCLETHMFAMERELVQMQQGERTVDGYEERFSDLCRLIPGVYPTEL 735
           PITW RF   FR+       M   +RE  +++QG R+V  Y   F++L R  P     + 
Sbjct: 150 PITWARFTAAFRRTHVPAGVMALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDE 209

Query: 734 QRIAGFRQGLRLPIRERLSLFTYTSFHQLRNAALQVERDIAESRGEKR---------GRS 582
           ++   F  G+   +  RL    Y  F +L + ++++E    E    KR         G +
Sbjct: 210 EKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANFRNQQGAN 269

Query: 581 DVTGATGPYRQGFQRNFQQHRPGQSHFSAPSVRPRLSGAFSAPRLPPRVSGFHGGISGVP 402
                T PY  G     QQ R      SAP  RP+       P+      G H      P
Sbjct: 270 QRIRYTNPYPGGSSSQQQQPR------SAP--RPQFVVRVPQPQQQQSQQGTHAPRPPTP 321

Query: 401 ADVHVQCYQCGQYGHRAKDCQQQRAVCFRCQQPGHFANVCPSYMGSGRAATSVSTXXXXX 222
           A          Q G   +D Q  + +CF C +PGHFA+ CP        A   S      
Sbjct: 322 A---------AQSGQGRRDVQGPQRLCFNCFEPGHFADKCPKSRRQQGQAPPCSN----- 367

Query: 221 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGQINAVTQQEARDTPRMVTGT 42
                                                 RG++N VT ++   TP ++ GT
Sbjct: 368 -------------------------------NGGKDVIRGRVNHVTAEDVLTTPDVIVGT 396

Query: 41  LSLHGLDARVLFD 3
             +H + A +LFD
Sbjct: 397 FLIHSIPATILFD 409


>gb|AAU44292.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1816

 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 81/313 (25%), Positives = 117/313 (37%), Gaps = 9/313 (2%)
 Frame = -2

Query: 914  PITWVRFGELFRQNFCLETHMFAMERELVQMQQGERTVDGYEERFSDLCRLIPGVYPTEL 735
            PITW RF   FR+       +   +RE  +++QG R+V  Y   F++L R  P     + 
Sbjct: 458  PITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDE 517

Query: 734  QRIAGFRQGLRLPIRERLSLFTYTSFHQLRNAALQVERDIAESRGEKR---------GRS 582
            ++   F  GL   +  RL    Y  F +L + ++++E    E    KR         G +
Sbjct: 518  EKQEKFLAGLDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANFRNQQGAN 577

Query: 581  DVTGATGPYRQGFQRNFQQHRPGQSHFSAPSVRPRLSGAFSAPRLPPRVSGFHGGISGVP 402
                 T PY  G     QQ +  Q   SAP  RP+       P+      G        P
Sbjct: 578  QRVRYTNPYPGGSSSQQQQQQQQQQPRSAP--RPQFVVRIPQPQQQQGQQGTRAPRPPTP 635

Query: 401  ADVHVQCYQCGQYGHRAKDCQQQRAVCFRCQQPGHFANVCPSYMGSGRAATSVSTXXXXX 222
            A   VQ       G R  D Q Q+ +CF C +PGHFA+ CP        A   S      
Sbjct: 636  AVQPVQ-------GRR--DAQGQQRLCFNCFEPGHFADKCPQPRRQQGQAPPRSN----- 681

Query: 221  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGQINAVTQQEARDTPRMVTGT 42
                                                  RG++N VT ++   TP ++ GT
Sbjct: 682  -------------------------------NGGKDVIRGRVNHVTAEDVLTTPDVIVGT 710

Query: 41   LSLHGLDARVLFD 3
              +H + A +LFD
Sbjct: 711  FLVHSIPATILFD 723


>gb|AAX96434.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550057|gb|ABA92854.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1409

 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 81/314 (25%), Positives = 118/314 (37%), Gaps = 10/314 (3%)
 Frame = -2

Query: 914 PITWVRFGELFRQNFCLETHMFAMERELVQMQQGERTVDGYEERFSDLCRLIPGVYPTEL 735
           PITW RF   FR+       M   +RE  +++QG R+V  Y   F+DL R  P     + 
Sbjct: 153 PITWARFTAAFRRTHVPAGVMALKKREFRELKQGNRSVMEYLHEFNDLARYAPEDVREDE 212

Query: 734 QRIAGFRQGLRLPIRERLSLFTYTSFHQLRNAALQVERDIAESRGEKR---------GRS 582
           ++   F  G+   +  RL    Y  F +L + ++++E    E    KR         G +
Sbjct: 213 EKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANFRNQQGAN 272

Query: 581 DVTGATGPYRQGFQRNFQQHRPGQSHFSAPSVRPRLSGAFSAPRLPPRVSGFHGGISGVP 402
                T PY  G     QQ    Q   SAP  RP+       P+      G       VP
Sbjct: 273 QRIRYTNPYPGGSSSQQQQQ---QQPRSAP--RPQFVVRVPQPQQQQSQQGTRAPRPHVP 327

Query: 401 ADVHVQCYQCGQYGHRAKDCQQQRAVCFRCQQPGHFANVCPS-YMGSGRAATSVSTXXXX 225
           A          Q G   +D Q Q+ +CF C +PGHFA+ CP      G+A    +     
Sbjct: 328 A---------VQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNN---- 374

Query: 224 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGQINAVTQQEARDTPRMVTG 45
                                                  RG++N VT ++   TP ++ G
Sbjct: 375 ---------------------------------GGKDVIRGRVNHVTAEDVLTTPDVIVG 401

Query: 44  TLSLHGLDARVLFD 3
           T  +H + A +LFD
Sbjct: 402 TFLIHSIPATILFD 415


>gb|ABA98546.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1800

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 76/313 (24%), Positives = 114/313 (36%), Gaps = 9/313 (2%)
 Frame = -2

Query: 914  PITWVRFGELFRQNFCLETHMFAMERELVQMQQGERTVDGYEERFSDLCRLIPGVYPTEL 735
            PITW RF   FR+       +   +RE  +++QG R+V  Y   F++L R  P     + 
Sbjct: 470  PITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDE 529

Query: 734  QRIAGFRQGLRLPIRERLSLFTYTSFHQLRNAALQVERDIAESRGEKR---------GRS 582
            ++   F  G+   +  RL    Y  F +L + ++++E    E    KR         G +
Sbjct: 530  EKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANFRNQQGAN 589

Query: 581  DVTGATGPYRQGFQRNFQQHRPGQSHFSAPSVRPRLSGAFSAPRLPPRVSGFHGGISGVP 402
                 T PY  G     QQ    Q     P+ RP+    F  P+      G        P
Sbjct: 590  QRGRYTNPYPGGSSSQQQQ----QQQQPRPAPRPQFVVRFPQPQQQQNQQGTRAPRPPTP 645

Query: 401  ADVHVQCYQCGQYGHRAKDCQQQRAVCFRCQQPGHFANVCPSYMGSGRAATSVSTXXXXX 222
                       Q G   +D Q Q+ +CF C +PGHFA+ CP        A   S      
Sbjct: 646  T---------VQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSN----- 691

Query: 221  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGQINAVTQQEARDTPRMVTGT 42
                                                  RG++N VT ++   TP ++ GT
Sbjct: 692  -------------------------------NGGKDVIRGRVNHVTAEDVLTTPDVIVGT 720

Query: 41   LSLHGLDARVLFD 3
              +H + A +LFD
Sbjct: 721  FLVHSIPATILFD 733


>gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1748

 Score = 84.7 bits (208), Expect = 3e-14
 Identities = 79/314 (25%), Positives = 120/314 (38%), Gaps = 10/314 (3%)
 Frame = -2

Query: 914  PITWVRFGELFRQNFCLETHMFAMERELVQMQQGERTVDGYEERFSDLCRLIPGVYPTEL 735
            PITW RF   FR+       +   +RE  +++QG R+V  Y   F++L R  P     + 
Sbjct: 392  PITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDE 451

Query: 734  QRIAGFRQGLRLPIRERLSLFTYTSFHQLRNAALQVERDIAESRGEKR---------GRS 582
            ++   F  G+   +  RL    Y  F +L + ++++E    E    KR         G +
Sbjct: 452  EKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANFRNQQGAN 511

Query: 581  DVTGATGPYRQGFQRNFQQHRPGQSHFSAPSVRPRLSGAFSAPRLPPRVSGFHGGISGVP 402
                 T PY  G   + QQ +P QS  SAP  RP+       P+      G        P
Sbjct: 512  QRVRYTNPY-PGGSSSQQQQQPQQSR-SAP--RPQFVVRVPQPQQQQNQQGTRAPRPPTP 567

Query: 401  ADVHVQCYQCGQYGHRAKDCQQQRAVCFRCQQPGHFANVCPS-YMGSGRAATSVSTXXXX 225
                       Q G   +D Q Q+ +CF C +PGHFA+ CP      G+A    +     
Sbjct: 568  T---------VQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNN---- 614

Query: 224  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGQINAVTQQEARDTPRMVTG 45
                                                   RG++N VT ++   TP ++ G
Sbjct: 615  ---------------------------------GGKDVIRGRVNHVTAEDVLTTPDVIVG 641

Query: 44   TLSLHGLDARVLFD 3
            T  +H + A +LFD
Sbjct: 642  TFLIHSIPATILFD 655