BLASTX nr result
ID: Lithospermum22_contig00016881
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00016881
(496 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633847.1| PREDICTED: probable ubiquitin conjugation fa... 95 1e-34
ref|XP_002873722.1| U-box domain-containing protein [Arabidopsis... 96 2e-31
ref|XP_004136686.1| PREDICTED: probable ubiquitin conjugation fa... 96 2e-31
ref|NP_568313.2| putative ubiquitin conjugation factor E4 [Arabi... 94 9e-31
gb|ABG89128.1| UFD2 [synthetic construct] 94 9e-31
>ref|XP_003633847.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Vitis
vinifera] gi|296082973|emb|CBI22274.3| unnamed protein
product [Vitis vinifera]
Length = 1037
Score = 95.1 bits (235), Expect(2) = 1e-34
Identities = 46/64 (71%), Positives = 53/64 (82%)
Frame = +3
Query: 3 DRLSGNFISAEPPFEYLINCYRRANEELKKIGNMKDKDMRFDLEGVIKQAKKLFVSYCRI 182
DRLSG+F AEPPF YLI CYRRA +E KKI + KDK++R +LE V+KQAKKL VSYCRI
Sbjct: 66 DRLSGHFPGAEPPFPYLIGCYRRACDEGKKIASKKDKNLRSELELVVKQAKKLAVSYCRI 125
Query: 183 HLGN 194
HLGN
Sbjct: 126 HLGN 129
Score = 76.3 bits (186), Expect(2) = 1e-34
Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +1
Query: 268 IHLGNNDMFPNW--GSDVSGVSPLLPLVFAEXXXXXXXXXXXXXXXXXXKCPPGFLEEFF 441
IHLGN DMF NW G++ S VSPLLPL+F+E CPPGFLEEFF
Sbjct: 125 IHLGNPDMFSNWDSGANDSAVSPLLPLIFSEVSSSVDGFGGSSIG-----CPPGFLEEFF 179
Query: 442 REGDYDSMEMVMKQLYED 495
R+ D+DS++ + K LYE+
Sbjct: 180 RDSDFDSLDPIFKGLYEN 197
>ref|XP_002873722.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297319559|gb|EFH49981.1| U-box domain-containing
protein [Arabidopsis lyrata subsp. lyrata]
Length = 1038
Score = 95.9 bits (237), Expect(2) = 2e-31
Identities = 46/64 (71%), Positives = 53/64 (82%)
Frame = +3
Query: 3 DRLSGNFISAEPPFEYLINCYRRANEELKKIGNMKDKDMRFDLEGVIKQAKKLFVSYCRI 182
DRLSG+F AEPPF YLI CYRRA +E KKI +MKDK++R ++E V KQAKKL VSYCRI
Sbjct: 66 DRLSGDFSDAEPPFPYLIGCYRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLAVSYCRI 125
Query: 183 HLGN 194
HLGN
Sbjct: 126 HLGN 129
Score = 65.1 bits (157), Expect(2) = 2e-31
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Frame = +1
Query: 268 IHLGNNDMFPNWGSDVSG---------VSPLLPLVFAEXXXXXXXXXXXXXXXXXXKCPP 420
IHLGN DMF N G VSP+LPL+FAE + PP
Sbjct: 125 IHLGNPDMFGNSDKPTGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGASSSGV--QAPP 182
Query: 421 GFLEEFFREGDYDSMEMVMKQLYED 495
GFL+EFF++ D+DS++ ++K+LYED
Sbjct: 183 GFLDEFFKDSDFDSLDPILKELYED 207
>ref|XP_004136686.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis
sativus] gi|449494681|ref|XP_004159617.1| PREDICTED:
probable ubiquitin conjugation factor E4-like [Cucumis
sativus]
Length = 1043
Score = 95.5 bits (236), Expect(2) = 2e-31
Identities = 44/64 (68%), Positives = 53/64 (82%)
Frame = +3
Query: 3 DRLSGNFISAEPPFEYLINCYRRANEELKKIGNMKDKDMRFDLEGVIKQAKKLFVSYCRI 182
DRLS + SAEPPF+YLI CYRRA++E KKI +MKDK +R D+E +KQAKKL +SYCRI
Sbjct: 66 DRLSAHVPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSDMEIALKQAKKLTISYCRI 125
Query: 183 HLGN 194
HLGN
Sbjct: 126 HLGN 129
Score = 65.1 bits (157), Expect(2) = 2e-31
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Frame = +1
Query: 268 IHLGNNDMFPNWGSDV---SGVSPLLPLVFAEXXXXXXXXXXXXXXXXXX-KCPPGFLEE 435
IHLGN ++F + G+D+ S SPLLPL+F+E +CPPGFLEE
Sbjct: 125 IHLGNPELFSS-GADLGTNSNTSPLLPLIFSEVGGSSMDGFGASTSVGGAYQCPPGFLEE 183
Query: 436 FFREGDYDSMEMVMKQLYED 495
F R+ D+D++E ++K LYED
Sbjct: 184 FLRDSDFDTLEPILKGLYED 203
>ref|NP_568313.2| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana]
gi|75174048|sp|Q9LF41.1|UBE4_ARATH RecName:
Full=Probable ubiquitin conjugation factor E4; AltName:
Full=Plant U-box protein 1; AltName: Full=U-box
domain-containing protein 1; AltName:
Full=Ubiquitin-fusion degradation protein 2-like;
Short=UB fusion protein 2-like
gi|9755795|emb|CAC01739.1| ubiquitin-fusion degradation
protein-like [Arabidopsis thaliana]
gi|332004773|gb|AED92156.1| putative ubiquitin
conjugation factor E4 [Arabidopsis thaliana]
Length = 1038
Score = 94.0 bits (232), Expect(2) = 9e-31
Identities = 45/64 (70%), Positives = 53/64 (82%)
Frame = +3
Query: 3 DRLSGNFISAEPPFEYLINCYRRANEELKKIGNMKDKDMRFDLEGVIKQAKKLFVSYCRI 182
DRLSG+F AEPPF YLI C+RRA +E KKI +MKDK++R ++E V KQAKKL VSYCRI
Sbjct: 66 DRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLAVSYCRI 125
Query: 183 HLGN 194
HLGN
Sbjct: 126 HLGN 129
Score = 64.7 bits (156), Expect(2) = 9e-31
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Frame = +1
Query: 268 IHLGNNDMFPNWGSDVSG---------VSPLLPLVFAEXXXXXXXXXXXXXXXXXXKCPP 420
IHLGN DMF N G VSP+LPL+FAE + PP
Sbjct: 125 IHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGASSSGV--QAPP 182
Query: 421 GFLEEFFREGDYDSMEMVMKQLYED 495
GFL+EFF++ D+DS++ ++K+LYED
Sbjct: 183 GFLDEFFKDSDFDSLDSILKELYED 207
>gb|ABG89128.1| UFD2 [synthetic construct]
Length = 1037
Score = 94.0 bits (232), Expect(2) = 9e-31
Identities = 45/64 (70%), Positives = 53/64 (82%)
Frame = +3
Query: 3 DRLSGNFISAEPPFEYLINCYRRANEELKKIGNMKDKDMRFDLEGVIKQAKKLFVSYCRI 182
DRLSG+F AEPPF YLI C+RRA +E KKI +MKDK++R ++E V KQAKKL VSYCRI
Sbjct: 66 DRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLAVSYCRI 125
Query: 183 HLGN 194
HLGN
Sbjct: 126 HLGN 129
Score = 64.7 bits (156), Expect(2) = 9e-31
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Frame = +1
Query: 268 IHLGNNDMFPNWGSDVSG---------VSPLLPLVFAEXXXXXXXXXXXXXXXXXXKCPP 420
IHLGN DMF N G VSP+LPL+FAE + PP
Sbjct: 125 IHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGASSSGV--QAPP 182
Query: 421 GFLEEFFREGDYDSMEMVMKQLYED 495
GFL+EFF++ D+DS++ ++K+LYED
Sbjct: 183 GFLDEFFKDSDFDSLDSILKELYED 207