BLASTX nr result

ID: Lithospermum22_contig00016477 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00016477
         (226 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534411.1| WD-repeat protein, putative [Ricinus communi...   109   3e-22
ref|XP_002308129.1| predicted protein [Populus trichocarpa] gi|2...   106   2e-21
ref|XP_002269448.1| PREDICTED: uncharacterized WD repeat-contain...   103   2e-20
ref|XP_002874820.1| transducin family protein [Arabidopsis lyrat...   102   3e-20
gb|AAD17343.1| similar to beta-transducins (Pfam: PF00400, Score...   102   3e-20

>ref|XP_002534411.1| WD-repeat protein, putative [Ricinus communis]
           gi|223525346|gb|EEF27972.1| WD-repeat protein, putative
           [Ricinus communis]
          Length = 906

 Score =  109 bits (272), Expect = 3e-22
 Identities = 45/69 (65%), Positives = 58/69 (84%)
 Frame = -3

Query: 209 ACGYTNDIMASACGSTNAIMVSAGYHGDIKVWDFNTCKLKSRWEVGCSLIKTIYHRINGL 30
           +C +  +++  AC STN +M+SAGYHGD+KVWDF   +LKSRWEVGCSL++ +YHR+NGL
Sbjct: 470 SCAHEGEVVGVACDSTNTLMISAGYHGDVKVWDFKGLELKSRWEVGCSLVQIVYHRLNGL 529

Query: 29  LATVADDLV 3
           LATVADDLV
Sbjct: 530 LATVADDLV 538


>ref|XP_002308129.1| predicted protein [Populus trichocarpa] gi|222854105|gb|EEE91652.1|
           predicted protein [Populus trichocarpa]
          Length = 910

 Score =  106 bits (264), Expect = 2e-21
 Identities = 45/69 (65%), Positives = 56/69 (81%)
 Frame = -3

Query: 209 ACGYTNDIMASACGSTNAIMVSAGYHGDIKVWDFNTCKLKSRWEVGCSLIKTIYHRINGL 30
           +C + ++++  AC STN  M+SAGYHGD+KVWDF    LKSRWEVGCSL+K +YHR+NGL
Sbjct: 470 SCAHESEVVGVACDSTNTQMISAGYHGDVKVWDFKGRALKSRWEVGCSLVKIVYHRLNGL 529

Query: 29  LATVADDLV 3
           LATVADD V
Sbjct: 530 LATVADDFV 538


>ref|XP_002269448.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07
           isoform 1 [Vitis vinifera] gi|297740341|emb|CBI30523.3|
           unnamed protein product [Vitis vinifera]
          Length = 905

 Score =  103 bits (256), Expect = 2e-20
 Identities = 42/69 (60%), Positives = 55/69 (79%)
 Frame = -3

Query: 209 ACGYTNDIMASACGSTNAIMVSAGYHGDIKVWDFNTCKLKSRWEVGCSLIKTIYHRINGL 30
           +C +  +++  AC STN +M+SAGYHGDIKVWDF   +LKSRWE+GC+++K +YHR NGL
Sbjct: 470 SCAHDGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRELKSRWEIGCAVVKIVYHRSNGL 529

Query: 29  LATVADDLV 3
           LAT  DDLV
Sbjct: 530 LATATDDLV 538


>ref|XP_002874820.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297320657|gb|EFH51079.1| transducin family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 911

 Score =  102 bits (255), Expect = 3e-20
 Identities = 42/66 (63%), Positives = 55/66 (83%)
 Frame = -3

Query: 200 YTNDIMASACGSTNAIMVSAGYHGDIKVWDFNTCKLKSRWEVGCSLIKTIYHRINGLLAT 21
           +  +++  AC STN +M+SAGYHGDIKVWDF   +LKS+W++GCSL+K +YHR+NGLLAT
Sbjct: 473 HDGEVIGVACDSTNTLMISAGYHGDIKVWDFKKRELKSQWDIGCSLVKIVYHRVNGLLAT 532

Query: 20  VADDLV 3
           VADD V
Sbjct: 533 VADDFV 538


>gb|AAD17343.1| similar to beta-transducins (Pfam: PF00400, Score=71.7, E=1.5e-17,
           N=6) [Arabidopsis thaliana] gi|7267253|emb|CAB81036.1|
           putative WD-repeat membrane protein [Arabidopsis
           thaliana]
          Length = 931

 Score =  102 bits (254), Expect = 3e-20
 Identities = 42/66 (63%), Positives = 55/66 (83%)
 Frame = -3

Query: 200 YTNDIMASACGSTNAIMVSAGYHGDIKVWDFNTCKLKSRWEVGCSLIKTIYHRINGLLAT 21
           +  +++  AC STN +M+SAGYHGD+KVWDF   +LKS+W+VGCSL+K +YHR+NGLLAT
Sbjct: 494 HDGEVIGVACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLAT 553

Query: 20  VADDLV 3
           VADD V
Sbjct: 554 VADDFV 559


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