BLASTX nr result
ID: Lithospermum22_contig00016284
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00016284
(2046 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 229 2e-76
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 229 2e-76
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 224 1e-74
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 213 7e-71
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 204 7e-70
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 229 bits (584), Expect(3) = 2e-76
Identities = 127/326 (38%), Positives = 191/326 (58%), Gaps = 8/326 (2%)
Frame = -3
Query: 1102 LCKAEWEFYRSKSRISWYKDRDANTKLFHTSMKINHRKNLITKIEDEQGKLDEDY----E 935
L KAE F+ KS ISW + D NT FH + N I + D+ G+ E E
Sbjct: 341 LAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKE 400
Query: 934 HVKLNAVKFYKDLFSEKVNLVDKRAWSEMTV----SCKIDHEDYNMLQRTITREKIEACF 767
+K ++ F++ L V + A S+M + C +D N L+R+ + I+ F
Sbjct: 401 GIKEHSCNFFESLLCG-VEGENSLAQSDMNLLLSFRCSVDQ--INDLERSFSDLDIQEAF 457
Query: 766 MSMKGDKAPRPDGLSLEFYKDAWNVVGDSVVDAVQSFFQIGDMPKAMNSTSLILIPKVQQ 587
S+ +KA PDG S EF+K W VVG V +AVQ FF+ G + K N+T+L+LIPK+
Sbjct: 458 FSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITN 517
Query: 586 SKTMRNFKSIACYNVLYKGISTVIACRLKTILHKVVGIQQFTYVPGRHISDDILLIQEVI 407
S M +F+ I+C N LYK I+ ++ RLK +L++V+ Q ++PGR +S+++LL E++
Sbjct: 518 SSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIV 577
Query: 406 NGYHKSNGRPRCFIKVDIMKAYDSVDWFFLWLMLEKLNFPAIFISWIRKCVSIVWFSINL 227
+GY+ N R +KVD+ KA+DSV W F+ L P F+ WI +C+S +FS+ +
Sbjct: 578 HGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMV 637
Query: 226 NGSLNGYFKSSRALRQGDLLSSYLFI 149
NGS +G+FKS++ LRQGD LS YLF+
Sbjct: 638 NGSSSGFFKSNKGLRQGDPLSPYLFV 663
Score = 68.9 bits (167), Expect(3) = 2e-76
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Frame = -1
Query: 1626 FNLCIQKIDVMEVAHSGCDFTWSRN*EIQSILRVLDRILYNKEWMHSMPGCNVSFKSFVE 1447
F C+ D+ ++ + G +TW + + + +DRIL N W P +F
Sbjct: 166 FRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDF 225
Query: 1446 SDHCAMDVSLYSNVHKKPRPFKYHNFWSTHESFMDLVRSAW-DVSVEGNNMWILQTXXXX 1270
SDH + +V L V K RPF++ N++ + F+ L+R W +V G+ M+ +
Sbjct: 226 SDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKH 285
Query: 1269 XXXXXXXXNREAFSNISSRVIE 1204
+RE +S+I RV E
Sbjct: 286 LKLPICCFSRENYSDIEKRVSE 307
Score = 37.7 bits (86), Expect(3) = 2e-76
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 1796 VYGKNTGSERKELWASLV--SVSCVVRFALWIIGGDFNVVRNLSEAI 1662
VY N RKELW LV ++S VV WI+ GDFN + N AI
Sbjct: 109 VYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAI 155
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 229 bits (584), Expect(3) = 2e-76
Identities = 127/326 (38%), Positives = 191/326 (58%), Gaps = 8/326 (2%)
Frame = -3
Query: 1102 LCKAEWEFYRSKSRISWYKDRDANTKLFHTSMKINHRKNLITKIEDEQGKLDEDY----E 935
L KAE F+ KS ISW + D NT FH + N I + D+ G+ E E
Sbjct: 341 LAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKE 400
Query: 934 HVKLNAVKFYKDLFSEKVNLVDKRAWSEMTV----SCKIDHEDYNMLQRTITREKIEACF 767
+K ++ F++ L V + A S+M + C +D N L+R+ + I+ F
Sbjct: 401 GIKEHSCNFFESLLCG-VEGENSLAQSDMNLLLSFRCSVDQ--INDLERSFSDLDIQEAF 457
Query: 766 MSMKGDKAPRPDGLSLEFYKDAWNVVGDSVVDAVQSFFQIGDMPKAMNSTSLILIPKVQQ 587
S+ +KA PDG S EF+K W VVG V +AVQ FF+ G + K N+T+L+LIPK+
Sbjct: 458 FSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITN 517
Query: 586 SKTMRNFKSIACYNVLYKGISTVIACRLKTILHKVVGIQQFTYVPGRHISDDILLIQEVI 407
S M +F+ I+C N LYK I+ ++ RLK +L++V+ Q ++PGR +S+++LL E++
Sbjct: 518 SSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIV 577
Query: 406 NGYHKSNGRPRCFIKVDIMKAYDSVDWFFLWLMLEKLNFPAIFISWIRKCVSIVWFSINL 227
+GY+ N R +KVD+ KA+DSV W F+ L P F+ WI +C+S +FS+ +
Sbjct: 578 HGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMV 637
Query: 226 NGSLNGYFKSSRALRQGDLLSSYLFI 149
NGS +G+FKS++ LRQGD LS YLF+
Sbjct: 638 NGSSSGFFKSNKGLRQGDPLSPYLFV 663
Score = 68.9 bits (167), Expect(3) = 2e-76
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Frame = -1
Query: 1626 FNLCIQKIDVMEVAHSGCDFTWSRN*EIQSILRVLDRILYNKEWMHSMPGCNVSFKSFVE 1447
F C+ D+ ++ + G +TW + + + +DRIL N W P +F
Sbjct: 166 FRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDF 225
Query: 1446 SDHCAMDVSLYSNVHKKPRPFKYHNFWSTHESFMDLVRSAW-DVSVEGNNMWILQTXXXX 1270
SDH + +V L V K RPF++ N++ + F+ L+R W +V G+ M+ +
Sbjct: 226 SDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKH 285
Query: 1269 XXXXXXXXNREAFSNISSRVIE 1204
+RE +S+I RV E
Sbjct: 286 LKLPICCFSRENYSDIEKRVSE 307
Score = 37.7 bits (86), Expect(3) = 2e-76
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 1796 VYGKNTGSERKELWASLV--SVSCVVRFALWIIGGDFNVVRNLSEAI 1662
VY N RKELW LV ++S VV WI+ GDFN + N AI
Sbjct: 109 VYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAI 155
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 224 bits (571), Expect(2) = 1e-74
Identities = 116/321 (36%), Positives = 190/321 (59%), Gaps = 2/321 (0%)
Frame = -3
Query: 1105 KLCKAEWEFYRSKSRISWYKDRDANTKLFHTSMKINHRKNLITKIEDEQGKLDEDYEHVK 926
+L AE F KSR+ W K D+NT FH M N I + D+ G+ E+ + ++
Sbjct: 341 ELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQ 400
Query: 925 LNAVKFYKDLFSEKVNLVDKRAWSEMT--VSCKIDHEDYNMLQRTITREKIEACFMSMKG 752
+ V F+K+LF +L+ S++ K D +L+ ++ I++ F ++
Sbjct: 401 THCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPS 460
Query: 751 DKAPRPDGLSLEFYKDAWNVVGDSVVDAVQSFFQIGDMPKAMNSTSLILIPKVQQSKTMR 572
+K+P PDG + EF+K W++VG S++ AVQ FF+ G + NST++ ++PK + +
Sbjct: 461 NKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRIT 520
Query: 571 NFKSIACYNVLYKGISTVIACRLKTILHKVVGIQQFTYVPGRHISDDILLIQEVINGYHK 392
F+ I+C N +YK IS ++A RL+ IL + Q +V GR +++++LL E++ G+ +
Sbjct: 521 EFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQ 580
Query: 391 SNGRPRCFIKVDIMKAYDSVDWFFLWLMLEKLNFPAIFISWIRKCVSIVWFSINLNGSLN 212
+N R +KVD+ KA+DSV W F+ L+ N P F++WI++C++ FSIN++GSL
Sbjct: 581 ANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLC 640
Query: 211 GYFKSSRALRQGDLLSSYLFI 149
GYFK S+ LRQGD LS LF+
Sbjct: 641 GYFKGSKGLRQGDPLSPSLFV 661
Score = 84.3 bits (207), Expect(2) = 1e-74
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 1/183 (0%)
Frame = -1
Query: 1695 FQCSQESV*SYWGNTPEKEAMDEFNLCIQKIDVMEVAHSGCDFTWSRN*EIQSILRVLDR 1516
F S + V + G + M+EF C+ ++ ++ G +TW N E I + +DR
Sbjct: 144 FNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDR 203
Query: 1515 ILYNKEWMHSMPGCNVSFKSFVESDHCAMDVSLYSNVHKKPRPFKYHNFWSTHESFMDLV 1336
IL N W+ + P SF + SDHC V++ + + +PFK NF H F++ +
Sbjct: 204 ILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKI 263
Query: 1335 RSAWD-VSVEGNNMWILQTXXXXXXXXXXXXNREAFSNISSRVIEMKNEWKTTQVAILTG 1159
R WD ++ +G+ M+ L NRE +S + RV++ KT Q +L
Sbjct: 264 RVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAA 323
Query: 1158 NSN 1150
S+
Sbjct: 324 PSS 326
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 213 bits (543), Expect(3) = 7e-71
Identities = 109/325 (33%), Positives = 189/325 (58%), Gaps = 7/325 (2%)
Frame = -3
Query: 1102 LCKAEWEFYRSKSRISWYKDRDANTKLFHTSMKINHRKNLITKIEDEQGKLDEDYEHVKL 923
L KAE F+ +SR++W + D+NT FH N I I D+ G + +K
Sbjct: 293 LVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKE 352
Query: 922 NAVKFYKDLFSEKVN---LVDKRAWSEMTVSCKIDHEDYNMLQRTITREKIEACFMSMKG 752
+ ++++ +L +V L+ + ++ + + H+ L + +R+ I++ F S
Sbjct: 353 HCIEYFSNLLGGEVGPPMLIQEDF--DLLLPFRCSHDQKKELAMSFSRQDIKSAFFSFPS 410
Query: 751 DKAPRPDGLSLEFYKDAWNVVGDSVVDAVQSFFQIGDMPKAMNSTSLILIPKVQQSKTMR 572
+K PDG +EF+K+ W+V+G V DAV FF + K N+T+L+LIPK+ + M
Sbjct: 411 NKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMN 470
Query: 571 NFKSIACYN----VLYKGISTVIACRLKTILHKVVGIQQFTYVPGRHISDDILLIQEVIN 404
+F+ I+C + LYK I+ ++ RL+ +L +V+ Q ++PGR +++++LL E++
Sbjct: 471 DFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQ 530
Query: 403 GYHKSNGRPRCFIKVDIMKAYDSVDWFFLWLMLEKLNFPAIFISWIRKCVSIVWFSINLN 224
GY++ N PR +KVD+ KA+DS+ W F+ L+ + P F+ WI +C+S FS+ +N
Sbjct: 531 GYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVN 590
Query: 223 GSLNGYFKSSRALRQGDLLSSYLFI 149
G+ G+FKS+R LRQG+ LS +LF+
Sbjct: 591 GNTGGFFKSTRGLRQGNPLSPFLFV 615
Score = 72.4 bits (176), Expect(3) = 7e-71
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
Frame = -1
Query: 1635 MDEFNLCIQKIDVMEVAHSGCDFTWSRN*EIQSILRVLDRILYNKEWMHSMPGCNVSFKS 1456
M F C+ + ++ ++ G FTW + + + LDRIL N+ W P F
Sbjct: 115 MKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGE 174
Query: 1455 FVESDHCAMDVSLYSNVHKKPRPFKYHNFWSTHESFMDLVRSAW-DVSVEGNNMWILQTX 1279
SDH + V + +H++ RPF+++NF + F+ LV W ++V G++M+ +
Sbjct: 175 PDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKK 234
Query: 1278 XXXXXXXXXXXNREAFSNISSRVIEMKN 1195
+ E FSN+ RV E N
Sbjct: 235 LKALKNPIRTFSMENFSNLEKRVKEAHN 262
Score = 31.6 bits (70), Expect(3) = 7e-71
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 1796 VYGKNTGSERKELWAS--LVSVSCVVRFALWIIGGDFNVV 1683
VY N RKELW L+SVS WI+ GDFN V
Sbjct: 58 VYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQV 97
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 204 bits (520), Expect(3) = 7e-70
Identities = 109/314 (34%), Positives = 178/314 (56%), Gaps = 3/314 (0%)
Frame = -3
Query: 1081 FYRSKSRISWYKDRDANTKLFHTSMKINHRKNLITKIEDEQGKLDEDYEHVKLNAVKFYK 902
F+R KSRI W + DANT+ FH ++ + NLI + + G E+ + +K + +Y
Sbjct: 350 FFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYS 409
Query: 901 DLF---SEKVNLVDKRAWSEMTVSCKIDHEDYNMLQRTITREKIEACFMSMKGDKAPRPD 731
L SE V + + + D + L + E+I SM +KAP PD
Sbjct: 410 HLLGIPSENVTPFSVEKIKGL-LPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPD 468
Query: 730 GLSLEFYKDAWNVVGDSVVDAVQSFFQIGDMPKAMNSTSLILIPKVQQSKTMRNFKSIAC 551
G +EF+ +AW +V SVV A++ FF G++P+ N+T++ LIPKV + + F+ +AC
Sbjct: 469 GFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVAC 528
Query: 550 YNVLYKGISTVIACRLKTILHKVVGIQQFTYVPGRHISDDILLIQEVINGYHKSNGRPRC 371
+YK I+ +I+ RLK + + V Q ++ GR + +++LL E+++ + R
Sbjct: 529 CTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRG 588
Query: 370 FIKVDIMKAYDSVDWFFLWLMLEKLNFPAIFISWIRKCVSIVWFSINLNGSLNGYFKSSR 191
++VDI KAYD+V+W FL +L+ L+ P +FI WI C+S +SI NG L G+F+ +
Sbjct: 589 CLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKK 648
Query: 190 ALRQGDLLSSYLFI 149
+RQGD +SS+LF+
Sbjct: 649 GIRQGDPMSSHLFV 662
Score = 75.9 bits (185), Expect(3) = 7e-70
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 1/163 (0%)
Frame = -1
Query: 1635 MDEFNLCIQKIDVMEVAHSGCDFTWSRN*EIQSILRVLDRILYNKEWMHSMPGCNVSFKS 1456
M++ C++ + ++ G FTWS + + ILR LDR L N EW P F
Sbjct: 165 MEDLQCCLRDSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDP 224
Query: 1455 FVESDHCAMDVSLYSNVHKKPRPFKYHNFWSTHESFMDLVRSAWDV-SVEGNNMWILQTX 1279
+SDH + + + + FKY +F S+H S++ + +AW+ ++ G++M+ L+
Sbjct: 225 PGDSDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQH 284
Query: 1278 XXXXXXXXXXXNREAFSNISSRVIEMKNEWKTTQVAILTGNSN 1150
NR FSNI R + + QV +LT S+
Sbjct: 285 LKVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSPSD 327
Score = 33.5 bits (75), Expect(3) = 7e-70
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -2
Query: 1796 VYGKNTGSERKELWASLVSVSCVVRFAL--WIIGGDFNVVRNLSE--AIGVIHLKRRPWM 1629
VYG+N+ +R+ LW ++ +S ++ W++ GDFN + SE +I L R
Sbjct: 107 VYGRNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGME 166
Query: 1628 SLICVFR 1608
L C R
Sbjct: 167 DLQCCLR 173