BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00015200
         (966 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   363   4e-98
ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|2...   360   3e-97
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...   355   9e-96
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   352   8e-95
ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thalian...   343   3e-92

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  363 bits (931), Expect = 4e-98
 Identities = 182/288 (63%), Positives = 230/288 (79%), Gaps = 9/288 (3%)
 Frame = +3

Query: 129 SCFKTSFSTNPCPETSPKPISSNLG---NFSGVTLEDAV---ELNAKKLRVDAWICSKIS 290
           SC +       C  ++ +P+ S  G   N++GV LE+ V     ++ KLR+D+WI S+I 
Sbjct: 29  SCSRVFRILRACSNSTDEPLVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRII 88

Query: 291 GISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIVYE 470
           GISRARVQSSI+SGLVSVN R +DK S+++R+GDKVNCTI+E+Q L+AEPE++PLDIVYE
Sbjct: 89  GISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYE 148

Query: 471 DAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEELN- 647
           D H+LV++KPAH+VVHPAPGNA+GTLVNGILHHCSLPTV+  ++D  SE+DD SD+E N 
Sbjct: 149 DEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRD--SEEDDISDDEFNS 206

Query: 648 --GGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIKRIYISLTC 821
              G   G  + +IRPGIVHRLDKGTSGLLVVAKDEHSHAHL+EQFK H+I R+YISLT 
Sbjct: 207 FAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTS 266

Query: 822 GIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVIEI 965
           G+P+P SGR+++P+GRD NNR+RM AV G S SG+ RHAASRY+VIEI
Sbjct: 267 GVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEI 314


>ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score =  360 bits (924), Expect = 3e-97
 Identities = 178/254 (70%), Positives = 220/254 (86%)
 Frame = +3

Query: 204 NFSGVTLEDAVELNAKKLRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVR 383
           N+SGV LE++V+  + K R+D+WI S+ISGISRARVQSSIKSGLVSVNG+ IDK S+ V+
Sbjct: 77  NYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVK 136

Query: 384 SGDKVNCTIAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGIL 563
           +GDKVNC I+E+Q L+AEPE +PLDIVYED ++LV++KPAH+VVHPAPGNATGTLVNGIL
Sbjct: 137 AGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGIL 196

Query: 564 HHCSLPTVSYTSQDIPSEDDDASDEELNGGVCSGESDASIRPGIVHRLDKGTSGLLVVAK 743
           HHCSLPTVS  SQ++ S  +D SD++ + G+CS    AS+RPGIVHRLDKGTSGLLVVAK
Sbjct: 197 HHCSLPTVS--SQEVLSGAEDVSDDD-DEGLCSSSYAASVRPGIVHRLDKGTSGLLVVAK 253

Query: 744 DEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSG 923
           DEHSHAHL+EQFK HTIKR+Y+SLTCG+P+P +GRIDVPIGRD +NR+RM A+   ++ G
Sbjct: 254 DEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEPNR-G 312

Query: 924 RTRHAASRYRVIEI 965
           + RHAASRY+VIEI
Sbjct: 313 QARHAASRYKVIEI 326


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score =  355 bits (911), Expect = 9e-96
 Identities = 173/259 (66%), Positives = 215/259 (83%), Gaps = 3/259 (1%)
 Frame = +3

Query: 195 NLGNFSGVTLEDAVEL---NAKKLRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDK 365
           N  N+ G+ LE+ V++    + KLR+D+WI S+ISGISRARVQSSIKSGLVSVNGR +DK
Sbjct: 49  NHTNYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDK 108

Query: 366 SSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGT 545
            S+ V+ GDKV CTI+E+Q L+AEPE+MPLDIVYED HLLV++KP H+VVHPAPGN TGT
Sbjct: 109 VSHNVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGT 168

Query: 546 LVNGILHHCSLPTVSYTSQDIPSEDDDASDEELNGGVCSGESDASIRPGIVHRLDKGTSG 725
           LVNGILHHC+LPTV+ +SQ++ S+ +D SD++      S   ++SIRPGIVHRLDKGTSG
Sbjct: 169 LVNGILHHCNLPTVAISSQEVLSDAEDRSDDDERS--YSSSCESSIRPGIVHRLDKGTSG 226

Query: 726 LLVVAKDEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVS 905
           LLVVAKDEH+HAHL+EQFK HTI+R+YISLT G+PS  +GRID+PIGRD NNR+RM A+ 
Sbjct: 227 LLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMTAIP 286

Query: 906 GSSKSGRTRHAASRYRVIE 962
           G  K GR RHAASR++V+E
Sbjct: 287 GPIKQGRARHAASRFKVVE 305


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
           gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
           pseudourine synthase 2, chloroplastic; AltName: Full=RNA
           pseudouridylate synthase 2; AltName: Full=RNA-uridine
           isomerase 2; Flags: Precursor
           gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
           [Arabidopsis thaliana]
          Length = 430

 Score =  352 bits (903), Expect = 8e-95
 Identities = 188/330 (56%), Positives = 237/330 (71%), Gaps = 12/330 (3%)
 Frame = +3

Query: 9   QL*SAHLDTEENTMFSSLNSSILP------PKTPHFLESNS-IPRLFSCFKTSFSTNPCP 167
           QL S  L T ++  + S  SS L       PK  +F+ ++S IP L +C           
Sbjct: 6   QLPSFSLTTAKSLRYPSSPSSSLSIFFSFFPKVSNFVRASSGIPNLVAC----------- 54

Query: 168 ETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSKISGISRARVQSSIKSGLVSVN 347
             SP  I     N +G+ +E+ V+    K+R+D+WI S+I+G+SRARVQSSI+ GLV+VN
Sbjct: 55  --SPTEIIIPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVN 112

Query: 348 GRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAP 527
           GR +DK S+ V+SGD+VNCTI+E+Q LKAE E++PLDIVYED H+LV++KPAH+VVHPAP
Sbjct: 113 GRVVDKVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAP 172

Query: 528 GNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEELNGG-----VCSGESDASIRPG 692
           GN TGTLVNGILHHCSLP V Y++    SE+DD SDEE                AS+RPG
Sbjct: 173 GNPTGTLVNGILHHCSLPCVDYSN----SEEDDDSDEETFSDDEEMTTSPSSYAASVRPG 228

Query: 693 IVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRD 872
           IVHRLDKGT+GLLVVAKDEHSHAHLAEQFK HTI+R+Y+SLT G+PSP  GRI++PIGRD
Sbjct: 229 IVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRD 288

Query: 873 SNNRLRMVAVSGSSKSGRTRHAASRYRVIE 962
           S+NR+RM A+ G  + GR RHAASRY+VIE
Sbjct: 289 SSNRIRMAAIPGGVRGGRARHAASRYKVIE 318


>ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thaliana]
           gi|332197668|gb|AEE35789.1| RNA pseudourine synthase 2
           [Arabidopsis thaliana]
          Length = 313

 Score =  343 bits (881), Expect = 3e-92
 Identities = 184/325 (56%), Positives = 232/325 (71%), Gaps = 12/325 (3%)
 Frame = +3

Query: 9   QL*SAHLDTEENTMFSSLNSSILP------PKTPHFLESNS-IPRLFSCFKTSFSTNPCP 167
           QL S  L T ++  + S  SS L       PK  +F+ ++S IP L +C           
Sbjct: 6   QLPSFSLTTAKSLRYPSSPSSSLSIFFSFFPKVSNFVRASSGIPNLVAC----------- 54

Query: 168 ETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSKISGISRARVQSSIKSGLVSVN 347
             SP  I     N +G+ +E+ V+    K+R+D+WI S+I+G+SRARVQSSI+ GLV+VN
Sbjct: 55  --SPTEIIIPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVN 112

Query: 348 GRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAP 527
           GR +DK S+ V+SGD+VNCTI+E+Q LKAE E++PLDIVYED H+LV++KPAH+VVHPAP
Sbjct: 113 GRVVDKVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAP 172

Query: 528 GNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEELNGG-----VCSGESDASIRPG 692
           GN TGTLVNGILHHCSLP V Y++    SE+DD SDEE                AS+RPG
Sbjct: 173 GNPTGTLVNGILHHCSLPCVDYSN----SEEDDDSDEETFSDDEEMTTSPSSYAASVRPG 228

Query: 693 IVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRD 872
           IVHRLDKGT+GLLVVAKDEHSHAHLAEQFK HTI+R+Y+SLT G+PSP  GRI++PIGRD
Sbjct: 229 IVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRD 288

Query: 873 SNNRLRMVAVSGSSKSGRTRHAASR 947
           S+NR+RM A+ G  + GR RHAASR
Sbjct: 289 SSNRIRMAAIPGGVRGGRARHAASR 313