BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00015125
         (529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234106.1| U1 small nuclear ribonucleoprotein C-like [S...    79   3e-13
ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263...    55   8e-06

>ref|NP_001234106.1| U1 small nuclear ribonucleoprotein C-like [Solanum lycopersicum]
           gi|62751087|dbj|BAD95791.1| similar to u1 small nuclear
           ribonucleoprotein C [Solanum lycopersicum]
          Length = 197

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
 Frame = +2

Query: 5   PPMPQMIAPPGAPMPGQMNGLQRPPGAPGLVXXXXXXXXXXXXXXXXXISTTGAPPMFA- 181
           PPMPQM+APPGAPMPGQ+N +QRP G P  V                  + TG PPMFA 
Sbjct: 119 PPMPQMLAPPGAPMPGQVNNMQRPAGPPSAVPGSMGMP-----------APTGGPPMFAP 167

Query: 182 PPMYSGNVAAPINGSSDSSTMNGGNAQGSE 271
           PP+Y G+   P  G  D+S+ N   A  ++
Sbjct: 168 PPVYQGSTTVPTTGGVDNSSTNAQAADSNQ 197


>ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263028 [Vitis vinifera]
           gi|363805533|sp|F6HQ26.1|RU1C_VITVI RecName: Full=U1
           small nuclear ribonucleoprotein C; Short=U1 snRNP C;
           Short=U1-C; Short=U1C
          Length = 213

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 39/98 (39%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
 Frame = +2

Query: 2   APPMPQMIAPPGAP---MPGQMNGLQRPP--GAPGLVXXXXXXXXXXXXXXXXXISTTGA 166
           AP MP M+APPGAP   MP  +N L RPP    P  V                  ++ GA
Sbjct: 131 APGMPSMMAPPGAPSMPMP-PLNSLPRPPTMNVPPAVPGSTSTP-----------TSGGA 178

Query: 167 PPMFAPPMYSGNVAAPINGSSDSSTMNGGNAQGSETSH 280
           P M   PMY  N A P +G  DS  +   NAQG E +H
Sbjct: 179 PSMMTQPMYQANPAGPTSGGFDSFNI---NAQGPEANH 213