BLASTX nr result
ID: Lithospermum22_contig00015061
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00015061
(707 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers... 67 4e-09
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 60 3e-08
gb|ADK92871.1| retrotransposon protein [Hypericum perforatum] 51 1e-07
gb|ABK28206.1| unknown [Arabidopsis thaliana] 52 4e-07
ref|NP_180979.1| RNase H domain-containing protein [Arabidopsis ... 52 4e-07
>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 67.0 bits (162), Expect = 4e-09
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 8/173 (4%)
Frame = +1
Query: 1 LPTKDKLDRKGMLVDKRYVLCSNSNEDLTHVLLTCPFSSRFWVAMPWNL-LTTEKSWQSF 177
+P D L +GM +D R C E + HVL +C F + W ++ L + +
Sbjct: 915 IPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFECGSVY 974
Query: 178 KEWWQFISHEIHQRGSPETLREIACTLWLLWKK*NVILFDEKGYDVQQIWVNRINLVADY 357
+ F+ + + + E R +W +WK N+ F+ K + V + + V D+
Sbjct: 975 ANLYHFLINRDNLKWPVELRRSFPWIIWRIWKNRNLFFFEGKRFTVLETILKVRKDVEDW 1034
Query: 358 LRLNTIESGQGTEVGRA-------TGARTVYRWRQPQQGFIKINIDAGWWKKN 495
+E + EVG++ V RW P ++K N+ W ++N
Sbjct: 1035 FAAQVVEKERRAEVGQSDQQVFSPRNVSPVVRWLPPPTDWVKCNVGLSWSRRN 1087
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 60.5 bits (145), Expect(2) = 3e-08
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 2/169 (1%)
Frame = +1
Query: 1 LPTKDKLDRKGMLVDKRYVLCSNSNEDLTHVLLTCPFSSRFWVAMPWNLLTTEKSWQSFK 180
LPT+ +L +GM +D C E + HVL TCP+++ W + L Q +
Sbjct: 1383 LPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTE 1442
Query: 181 EWWQFISHEIHQRGSPETLREIA--CTLWLLWKK*NVILFDEKGYDVQQIWVNRINLVAD 354
E F+ + + T + +A +W LWK N ++F++ ++ V +
Sbjct: 1443 ENISFLINSF-SNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNE 1501
Query: 355 YLRLNTIESGQGTEVGRATGARTVYRWRQPQQGFIKINIDAGWWKKNVK 501
+L+ ++ + V + R RW++P +K N DAG+ N +
Sbjct: 1502 WLQ--SVNRREDASVLTRSSHRANVRWKKPVFPLVKCNFDAGFTGNNTQ 1548
Score = 23.1 bits (48), Expect(2) = 3e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 567 QSVEGSLVAEAYALREGFSFDIRHDLKRVEFESDALQLIKVVN 695
QS G ++ E AL K V+FE D LIK +N
Sbjct: 1548 QSTGGWIIPETKALLIAMQQAWVRGYKCVQFEGDCEILIKAIN 1590
>gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]
Length = 593
Score = 50.8 bits (120), Expect(2) = 1e-07
Identities = 42/160 (26%), Positives = 67/160 (41%)
Frame = +1
Query: 1 LPTKDKLDRKGMLVDKRYVLCSNSNEDLTHVLLTCPFSSRFWVAMPWNLLTTEKSWQSFK 180
L + L R+G+ VD+ C+ +E H+ CP++ W + + +S +
Sbjct: 305 LSVRTNLTRRGIQVDEVCPCCAGPSETAAHLFFCCPYTLDI-----WKEVNVQIQVESSE 359
Query: 181 EWWQFISHEIHQRGSPETLREIACTLWLLWKK*NVILFDEKGYDVQQIWVNRINLVADYL 360
I ++ R E R A TLW++W+ N I+F G ++ V L +
Sbjct: 360 NILLAIDSLLNIRDPVEQSRR-AATLWIIWRVRNSIVF-RTGEEI----VICKELEKGFR 413
Query: 361 RLNTIESGQGTEVGRATGARTVYRWRQPQQGFIKINIDAG 480
+G R GA +W P GF KIN+DAG
Sbjct: 414 FWQDFMDTEGNPTVR--GAPRTSKWNAPTAGFYKINVDAG 451
Score = 30.8 bits (68), Expect(2) = 1e-07
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +3
Query: 492 ERKGMAGGVCCDEIG*FQGAYFLQLQSVEGSLVAEAYALREGFSFDIRHDLKRVEFESDA 671
ER G G V D+ G F A ++ + E A+ G F L+RVE ESD
Sbjct: 455 ERGGQVGIVVRDDTGAFVMATTRSFPNLVHPTLLEGQAVYTGLEFANALGLERVELESDC 514
Query: 672 LQLI 683
L ++
Sbjct: 515 LPVV 518
>gb|ABK28206.1| unknown [Arabidopsis thaliana]
Length = 293
Score = 52.0 bits (123), Expect(2) = 4e-07
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 3/150 (2%)
Frame = +1
Query: 55 VLCSNSNEDLTHVLLTCPFSSRFWVAMPWNLLTTEKSWQSFKE---WWQFISHEIHQRGS 225
V C +S E + H+L C F+ W P + S W + EI + G
Sbjct: 13 VRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLGK 72
Query: 226 PETLREIACTLWLLWKK*NVILFDEKGYDVQQIWVNRINLVADYLRLNTIESGQGTEVGR 405
L + LW LWK N ++F K YD ++ + D+ +T +G G
Sbjct: 73 IGNL--VPWLLWRLWKSRNELMFKGKEYDAPEVLRRAME---DFEEWSTRRELEGKASGP 127
Query: 406 ATGARTVYRWRQPQQGFIKINIDAGWWKKN 495
+W+ P ++K N DA W +N
Sbjct: 128 QVERNLSVQWKAPPYQWVKCNTDATWQLEN 157
Score = 28.1 bits (61), Expect(2) = 4e-07
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 564 LQSVEGSLVAEAYALREGFSFDIRHDLKRVEFESDALQLIKVVNA 698
L + L AE ALR R + KR+ FESDA L+ ++N+
Sbjct: 181 LPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNS 225
>ref|NP_180979.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3337363|gb|AAC27408.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
gi|91805481|gb|ABE65469.1| hypothetical protein
At2g34320 [Arabidopsis thaliana]
gi|330253864|gb|AEC08958.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 292
Score = 52.0 bits (123), Expect(2) = 4e-07
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 3/150 (2%)
Frame = +1
Query: 55 VLCSNSNEDLTHVLLTCPFSSRFWVAMPWNLLTTEKSWQSFKE---WWQFISHEIHQRGS 225
V C +S E + H+L C F+ W P + S W + EI + G
Sbjct: 13 VRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLGK 72
Query: 226 PETLREIACTLWLLWKK*NVILFDEKGYDVQQIWVNRINLVADYLRLNTIESGQGTEVGR 405
L + LW LWK N ++F K YD ++ + D+ +T +G G
Sbjct: 73 IGNL--VPWLLWRLWKSRNELMFKGKEYDAPEVLRRAME---DFEEWSTRRELEGKASGP 127
Query: 406 ATGARTVYRWRQPQQGFIKINIDAGWWKKN 495
+W+ P ++K N DA W +N
Sbjct: 128 QVERNLSVQWKAPPYQWVKCNTDATWQLEN 157
Score = 28.1 bits (61), Expect(2) = 4e-07
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 564 LQSVEGSLVAEAYALREGFSFDIRHDLKRVEFESDALQLIKVVNA 698
L + L AE ALR R + KR+ FESDA L+ ++N+
Sbjct: 181 LPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNS 225