BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00015033
         (2166 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                175   2e-84
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   157   1e-78
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...   170   3e-75
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   176   1e-71
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   157   1e-71

>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  175 bits (444), Expect(5) = 2e-84
 Identities = 81/170 (47%), Positives = 118/170 (69%)
 Frame = -2

Query: 2162 VNASIISLIPKTDHPETMKEYRPIACCNVLYKYTSKVLMARMAPLLDNLISKHQSAFVGG 1983
            +NA+I++LIPK D    M++YRPI+CCNV+YK  SK++  R+  +L   I ++QSAFV  
Sbjct: 82   LNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRE 141

Query: 1982 RLITDNIMLMQDLISNYHKDQGKPRFDVKVDLMKAYDMVAWDCLWQVISAMGFPERFIGL 1803
            RL+ +N++L  +L+ +YHKD   PR  +K+D+ KA+D V W  L   + A+ FPE F   
Sbjct: 142  RLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHW 201

Query: 1802 VKICVTSAKFSVCVNGSLQGHFDSQRGLRQGDPLSPYLFLLVMEVLGGLL 1653
            +K+C+++A FSV VNG L G F S+RGLRQG  LSPYLF++ M VL  ++
Sbjct: 202  IKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMI 251



 Score =  103 bits (257), Expect(5) = 2e-84
 Identities = 51/141 (36%), Positives = 82/141 (58%)
 Frame = -3

Query: 1624 FHPKYRELGITHLLFADDMFILYGANTETVVCIKNALTKFSEIVGLSPDLSKSSLYCAGI 1445
            +HPK ++L +THL FADD+ +       +V  + N   +F+   GL   L KS+LY AG+
Sbjct: 262  YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGV 321

Query: 1444 GAEL*EEISQVLGIGSDRLPMKYLGVPLITTRLSRRDCSGLVEKII*IFLHWSSKKLSYA 1265
                   I       S +LP++YLG+PL+T +++  D S L++K+      W+++ LSYA
Sbjct: 322  SELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 381

Query: 1264 GRLQLINSVLFGVQMYWLVVF 1202
            GRL LINSV+  +  +W+  +
Sbjct: 382  GRLALINSVIVSLSNFWMSAY 402



 Score = 62.0 bits (149), Expect(5) = 2e-84
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
 Frame = -2

Query: 1226 SNVLASCFPLPKSIIKEVE*KIRIFLWHGECDTGGYTPVAWKSVCLPKEEGGLDIMDFNT 1047
            SN   S + LP   IKE+E     FLW G         + W S+C  K+EGGL I     
Sbjct: 395  SNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLE 454

Query: 1046 WNIACLMKLLWDIFK------VLWVYAYRLKGVSLWCYRSKQG-DPWFWRKMI 909
             N    +KL+W +        V WV+ Y ++  S W    +     W W+K++
Sbjct: 455  ANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLL 507



 Score = 38.1 bits (87), Expect(5) = 2e-84
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -3

Query: 649 DMLFWKLNGDG---EFFLSSIWQKLRRHPKVKSWAHIPWHVKTILRHNFIMWLLFLRRLC 479
           D+  W+ +GD     F     W  +R     + W    W      +++F++WL    RL 
Sbjct: 597 DIFLWRSSGDNFRQSFITKVTWHNIRVIHTHRQWYKGVWFSYNTPKYSFLLWLAIHDRLS 656

Query: 478 TRDKLAEW 455
           T D++ +W
Sbjct: 657 TGDRIKKW 664



 Score = 25.0 bits (53), Expect(5) = 2e-84
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 876 VKVRYGTKKSLSYDDYLPGGPLIDRLNEEEAAWVGANSTDTVAMI 742
           V+++ G+  S  YD++   G L+D  N      +G     TVA +
Sbjct: 519 VEIKSGSSTSFWYDNWSQLGQLVDVTNARRTIDMGIPLAATVATV 563


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  157 bits (397), Expect(3) = 1e-78
 Identities = 74/172 (43%), Positives = 113/172 (65%)
 Frame = -2

Query: 2159 NASIISLIPKTDHPETMKEYRPIACCNVLYKYTSKVLMARMAPLLDNLISKHQSAFVGGR 1980
            N++ ++++PK  + + + E+RPI+CCN +YK  SK+L  R+  +L   IS  QSAFV GR
Sbjct: 503  NSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGR 562

Query: 1979 LITDNIMLMQDLISNYHKDQGKPRFDVKVDLMKAYDMVAWDCLWQVISAMGFPERFIGLV 1800
            L+T+N++L  +L+  + +     R  +KVDL KA+D V W  + + + A   P RF+  +
Sbjct: 563  LLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWI 622

Query: 1799 KICVTSAKFSVCVNGSLQGHFDSQRGLRQGDPLSPYLFLLVMEVLGGLLRKE 1644
            K C+TS  FS+ V+GSL G+F   +GLRQGDPLSP LF++ ME+L  LL  +
Sbjct: 623  KQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENK 674



 Score =  108 bits (270), Expect(3) = 1e-78
 Identities = 56/142 (39%), Positives = 86/142 (60%)
 Frame = -3

Query: 1624 FHPKYRELGITHLLFADDMFILYGANTETVVCIKNALTKFSEIVGLSPDLSKSSLYCAGI 1445
            +HPK  E+ I+ L FADD+ I Y     ++  IK+ L  F  + GL  +  KS++Y AG+
Sbjct: 682  YHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGL 741

Query: 1444 GAEL*EEISQVLGIGSDRLPMKYLGVPLITTRLSRRDCSGLVEKII*IFLHWSSKKLSYA 1265
              +  +E +   G  +   P +YLG+PL+  +L R D S L++KI   F HW++K LS+A
Sbjct: 742  -EDTDKEDTLAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFA 800

Query: 1264 GRLQLINSVLFGVQMYWLVVFL 1199
            GRLQLI+SV++    +WL  F+
Sbjct: 801  GRLQLISSVIYSTVNFWLSSFI 822



 Score = 77.4 bits (189), Expect(3) = 1e-78
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
 Frame = -2

Query: 1223 NVLASCFPLPKSIIKEVE*KIRIFLWHGECDTGGYTPVAWKSVCLPKEEGGLDIMDFNTW 1044
            N   S F LPK  +K +E     FLW  +    G   V+W++ CLPK EGGL + +F TW
Sbjct: 815  NFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTW 874

Query: 1043 NIACLMKLLWDIFK------VLWVYAYRLKGVSLWCYRSKQGDPWFWRKMIML 903
            N    ++L+W +F       V W +A RL+ V+ W   +     W W+ ++ L
Sbjct: 875  NKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGL 927



 Score = 60.8 bits (146), Expect = 1e-06
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = -3

Query: 661  EEGKDMLFWKLNGDGEFFLSS--IWQKLRRHPKVKSWAHIPWHVKTILRHNFIMWLLFLR 488
            + G+D   W + G      SS   W+ LR+    K WA   W+   I ++ F  W+  L 
Sbjct: 1015 DRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLN 1074

Query: 487  RLCTRDKLAEWGIVESNECSFC-AEAETTDHLFFKCDFSSCVVEAQVL*R 341
            RL  R +   W     + C  C  E ET DHLF  C   S + + QVL R
Sbjct: 1075 RLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQ-QVLAR 1123


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score =  170 bits (430), Expect(4) = 3e-75
 Identities = 79/170 (46%), Positives = 117/170 (68%)
 Frame = -2

Query: 2162 VNASIISLIPKTDHPETMKEYRPIACCNVLYKYTSKVLMARMAPLLDNLISKHQSAFVGG 1983
            +NA+I++LIPK D    M++YRPI+CCNV+YK  SK++  R+  +L   I ++QSAFV  
Sbjct: 651  LNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRE 710

Query: 1982 RLITDNIMLMQDLISNYHKDQGKPRFDVKVDLMKAYDMVAWDCLWQVISAMGFPERFIGL 1803
            RL+ +N++L  +L+ +YHKD   PR  +K+D+ KA+D V W  L   + A+ FPE+F   
Sbjct: 711  RLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHW 770

Query: 1802 VKICVTSAKFSVCVNGSLQGHFDSQRGLRQGDPLSPYLFLLVMEVLGGLL 1653
            +K+C+++A FSV VN    G F S+RGLRQG  LSPYLF++ M VL  ++
Sbjct: 771  IKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMI 820



 Score = 99.0 bits (245), Expect(4) = 3e-75
 Identities = 50/141 (35%), Positives = 79/141 (56%)
 Frame = -3

Query: 1624 FHPKYRELGITHLLFADDMFILYGANTETVVCIKNALTKFSEIVGLSPDLSKSSLYCAGI 1445
            +HPK ++L +THL FADD+ +       +V  + N    F+   GL   L KS+LY A +
Sbjct: 831  YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEV 890

Query: 1444 GAEL*EEISQVLGIGSDRLPMKYLGVPLITTRLSRRDCSGLVEKII*IFLHWSSKKLSYA 1265
                   I       S +LP++YLG PL+T +++  D S L++K+      W+++ LSYA
Sbjct: 891  SELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 950

Query: 1264 GRLQLINSVLFGVQMYWLVVF 1202
            GRL LINSV+  +  +W+  +
Sbjct: 951  GRLALINSVIVSLSNFWMSAY 971



 Score = 62.0 bits (149), Expect(4) = 3e-75
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
 Frame = -2

Query: 1226 SNVLASCFPLPKSIIKEVE*KIRIFLWHGECDTGGYTPVAWKSVCLPKEEGGLDIMDFNT 1047
            SN   S + LP   IKE+E     FLW G         + W S+C  K+EGGL I     
Sbjct: 964  SNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLE 1023

Query: 1046 WNIACLMKLLWDIFK------VLWVYAYRLKGVSLWCYRSKQG-DPWFWRKMI 909
             N    +KL+W +        V WV+ Y ++  S W    +     W W+K++
Sbjct: 1024 ANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLL 1076



 Score = 21.9 bits (45), Expect(4) = 3e-75
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 876  VKVRYGTKKSLSYDDYLPGGPLIDRLNEEEAAWVGANSTDTVAMI 742
            V+++ G+  S  YD++     L+D  N      +G     TVA +
Sbjct: 1088 VEIKSGSSTSFWYDNWSQLRQLVDVTNARRTIDMGIPLAATVATV 1132


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  176 bits (447), Expect(2) = 1e-71
 Identities = 84/172 (48%), Positives = 118/172 (68%)
 Frame = -2

Query: 2162 VNASIISLIPKTDHPETMKEYRPIACCNVLYKYTSKVLMARMAPLLDNLISKHQSAFVGG 1983
            +N++I++LIPK      MK+YRPI+CCNVLYK  SK++  R+  +L   I+ +QSAFV  
Sbjct: 509  INSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKD 568

Query: 1982 RLITDNIMLMQDLISNYHKDQGKPRFDVKVDLMKAYDMVAWDCLWQVISAMGFPERFIGL 1803
            RL+ +N++L  +L+ +YHKD    R  +K+D+ KA+D V W  L  V + +GFP  FI  
Sbjct: 569  RLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHW 628

Query: 1802 VKICVTSAKFSVCVNGSLQGHFDSQRGLRQGDPLSPYLFLLVMEVLGGLLRK 1647
            + IC+T+A FSV VNG L G+F S RGLRQG  LSPYLF++ M+VL  +L K
Sbjct: 629  INICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDK 680



 Score =  122 bits (306), Expect(2) = 1e-71
 Identities = 65/169 (38%), Positives = 97/169 (57%)
 Frame = -3

Query: 1642 AASEFRFHPKYRELGITHLLFADDMFILYGANTETVVCIKNALTKFSEIVGLSPDLSKSS 1463
            AA  F +HPK + +G+THL FADD+ +L      ++  I     +F++  GL   L KS+
Sbjct: 683  AARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKST 742

Query: 1462 LYCAGIGAEL*EEISQVLGIGSDRLPMKYLGVPLITTRLSRRDCSGLVEKII*IFLHWSS 1283
            +Y AG+ A    E++      S +LP++YLG+PLIT RLS  DC  L+E++      W+S
Sbjct: 743  VYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTS 802

Query: 1282 KKLSYAGRLQLINSVLFGVQMYWLVVFLYQRVSSRKWSRKLEYFFGMGS 1136
            + LSYAGRL LI+SVL+ +  +WL  F   R   R+  +    F   G+
Sbjct: 803  RFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGT 851



 Score = 70.1 bits (170), Expect = 2e-09
 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
 Frame = -2

Query: 1244 LCTVWGSNVLASCFPLPKSIIKEVE*KIRIFLWHGECDTGGYTPVAWKSVCLPKEEGGLD 1065
            +C  W      + F LP+  I+E+E     FLW G         ++W  VC PK+EGGL 
Sbjct: 821  ICNFW-----LAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLG 875

Query: 1064 IMDFNTWNIACLMKLLWDIFK------VLWVYAYRLKGVSLWCYRS--KQGDPWFWRKMI 909
            +      N  C +KL+W I        V WV  + L+  S W  +    QG  W W+K++
Sbjct: 876  LRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGS-WIWKKLL 934

Query: 908  MLLE 897
               E
Sbjct: 935  KYRE 938


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  157 bits (398), Expect(3) = 1e-71
 Identities = 78/170 (45%), Positives = 110/170 (64%)
 Frame = -2

Query: 2159 NASIISLIPKTDHPETMKEYRPIACCNVLYKYTSKVLMARMAPLLDNLISKHQSAFVGGR 1980
            NA+ + LIPK  +  +M ++RPI+C N +YK  SK+L  R+   L   IS  QSAF+ GR
Sbjct: 401  NATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGR 460

Query: 1979 LITDNIMLMQDLISNYHKDQGKPRFDVKVDLMKAYDMVAWDCLWQVISAMGFPERFIGLV 1800
            L  +N++L  +L+  Y+K    P   +KVDL KA+D V WD +   + A+  PE+F   +
Sbjct: 461  LFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWI 520

Query: 1799 KICVTSAKFSVCVNGSLQGHFDSQRGLRQGDPLSPYLFLLVMEVLGGLLR 1650
              C+++A FSV +NG   GHF S +GLRQGDP+SPYLF+L MEV  GLL+
Sbjct: 521  LECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQ 570



 Score = 92.4 bits (228), Expect(3) = 1e-71
 Identities = 50/150 (33%), Positives = 88/150 (58%)
 Frame = -3

Query: 1648 RKAASEFRFHPKYRELGITHLLFADDMFILYGANTETVVCIKNALTKFSEIVGLSPDLSK 1469
            R  +    +HPK  +L I+HL+FADD+ I +   + ++  I  +L  F+   GL  + +K
Sbjct: 572  RYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNK 631

Query: 1468 SSLYCAGIGAEL*EEISQVLGIGSDRLPMKYLGVPLITTRLSRRDCSGLVEKII*IFLHW 1289
            + LY AG+     + ++   G     LP++YLG+PL++ +L+  + + L+EKI   F  W
Sbjct: 632  TQLYHAGLSQSESDSMASY-GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSW 690

Query: 1288 SSKKLSYAGRLQLINSVLFGVQMYWLVVFL 1199
              + LS+AGR+QL+ SV+ G+  +W+  F+
Sbjct: 691  VVRLLSFAGRVQLLASVISGIVNFWISSFI 720



 Score = 69.7 bits (169), Expect(3) = 1e-71
 Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
 Frame = -2

Query: 1223 NVLASCFPLPKSIIKEVE*KIRIFLWHGECDTGGYTPVAWKSVCLPKEEGGLDIMDFNTW 1044
            N   S F LP   IK++E     FLW    D  G   VAW  VCLPK EGG+ +  F   
Sbjct: 713  NFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVS 772

Query: 1043 NIACLMKLLWDIFK---VLWVYAYRL----KGVSLWCYRSKQGDPWFWRKMIML 903
            N    ++++W +F     LWV  ++     K  S W    K  D W W+ ++ L
Sbjct: 773  NRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRL 826



 Score = 61.6 bits (148), Expect = 8e-07
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = -3

Query: 613  FFLSSIWQKLRRHPKVKSWAHIPWHVKTILRHNFIMWLLFLRRLCTRDKLAEWGIVESNE 434
            F  ++ W  LR       WA   W      +H F +W   L RL T+ +LA WG+     
Sbjct: 930  FSAAATWSALRPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTT 989

Query: 433  CSFCA-EAETTDHLFFKCDFSS--CVVEAQVL 347
            C  C+   ET DHLF  CDF++  C+  ++ L
Sbjct: 990  CGLCSLHPETRDHLFLSCDFANFLCIPRSEAL 1021