BLASTX nr result
ID: Lithospermum22_contig00014721
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00014721
(523 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ... 67 6e-18
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 61 4e-17
gb|ABA97563.1| retrotransposon protein, putative, unclassified [... 62 8e-17
gb|EEE55133.1| hypothetical protein OsJ_02920 [Oryza sativa Japo... 55 9e-16
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ... 60 5e-15
>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1747
Score = 67.4 bits (163), Expect(3) = 6e-18
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = -2
Query: 171 FGHTHIILLPKVQSLEFITQYIPISLCNITSKLIGKCITNMLKSIMPEIINPTQSAF 1
F H+ I L+PKVQ+ + +T+Y PISLCN+ KL+ K + N LKS++PE+I QSAF
Sbjct: 772 FNHSLIALIPKVQNPKKVTEYRPISLCNVVYKLVSKVLANRLKSVLPEVIAENQSAF 828
Score = 46.2 bits (108), Expect(3) = 6e-18
Identities = 26/94 (27%), Positives = 50/94 (53%)
Frame = -1
Query: 523 QRRRTNKIEGVTNEEVKWCTDMAEIQQVAVQYYKKLFGTEASFSLIDDALNEV*GIISKD 344
QR R+N+I G+ E+ +W +D+ +I V V Y++ LF T S+ + V +
Sbjct: 649 QRGRSNRICGILGEDNRWRSDVTDIGCVFVSYFRNLF-TAGGGSMDETIFEAVTSRVDAT 707
Query: 343 MKRELER*YNPDDVKKTVFGMC*LKAPGPGDVPS 242
K+ L++ Y ++++ + M K+PG +P+
Sbjct: 708 SKKSLDQVYRREEIELALKDMNPSKSPGSDGMPA 741
Score = 21.6 bits (44), Expect(3) = 6e-18
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -3
Query: 242 WAIVGDDTTEMALESLN 192
W I+G+D ++ L LN
Sbjct: 748 WNIIGNDVVDVCLRFLN 764
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 60.8 bits (146), Expect(3) = 4e-17
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = -2
Query: 156 IILLPKVQSLEFITQYIPISLCNITSKLIGKCITNMLKSIMPEIINPTQSAF 1
I+L+PKV+ E I PISLCN+ KL+ K + N LK I+P++I+P QSAF
Sbjct: 745 IVLIPKVKKPELIKDLRPISLCNVCYKLVSKVLANRLKKILPDVISPAQSAF 796
Score = 48.5 bits (114), Expect(3) = 4e-17
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Frame = -1
Query: 523 QRRRTNKIEGVTNEEVKWCTDMAEIQQVAVQYYKKLF---GTEASFSLIDDALNEV*GII 353
+RRR N+I + E+ W + + + ++++K+LF G + S L+D +V G +
Sbjct: 617 ERRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQLFTSNGGQNSQKLLDVVDRKVSGAM 676
Query: 352 SKDMKRELER*YNPDDVKKTVFGMC*LKAPGPGDVPSG 239
++ ++ E R ++VK+ + + LKAPGP +P+G
Sbjct: 677 NESLRAEFTR----EEVKEALDAIGDLKAPGPDGMPAG 710
Score = 23.1 bits (48), Expect(3) = 4e-17
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 248 AIWAIVGDDTTEMALESLNQGFI 180
A W +VG+ T+ LE L G I
Sbjct: 714 ACWDVVGEKVTDEVLEVLRGGAI 736
>gb|ABA97563.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 839
Score = 61.6 bits (148), Expect(2) = 8e-17
Identities = 28/67 (41%), Positives = 44/67 (65%)
Frame = -2
Query: 201 IVESGVHLPKFGHTHIILLPKVQSLEFITQYIPISLCNITSKLIGKCITNMLKSIMPEII 22
I+ G ++ T I+L+PKV++ E I PIS+CN+ K++ K + N LK I+PE+I
Sbjct: 352 ILNGGQIPQEWNETTIVLIPKVKTFELIKDLRPISVCNVLYKIVSKVLANRLKKILPEVI 411
Query: 21 NPTQSAF 1
+ +QSAF
Sbjct: 412 SQSQSAF 418
Score = 50.1 bits (118), Expect(2) = 8e-17
Identities = 30/94 (31%), Positives = 51/94 (54%)
Frame = -1
Query: 523 QRRRTNKIEGVTNEEVKWCTDMAEIQQVAVQYYKKLFGTEASFSLIDDALNEV*GIISKD 344
+RRR NKI + N+E W + E + + QY+K LF + + D L+ V +++D
Sbjct: 239 ERRRRNKIGRLKNDEGVWVENEEEKRGMIAQYFKTLFSSNRG-NNSDQLLDVVERKVTED 297
Query: 343 MKRELER*YNPDDVKKTVFGMC*LKAPGPGDVPS 242
M L Y +++K+ + + LKAPGP +P+
Sbjct: 298 MNELLTSAYISEEIKEALDSIGDLKAPGPDGMPA 331
>gb|EEE55133.1| hypothetical protein OsJ_02920 [Oryza sativa Japonica Group]
Length = 1049
Score = 54.7 bits (130), Expect(2) = 9e-16
Identities = 31/107 (28%), Positives = 59/107 (55%)
Frame = -1
Query: 520 RRRTNKIEGVTNEEVKWCTDMAEIQQVAVQYYKKLFGTEASFSLIDDALNEV*GIISKDM 341
RRRTNKI+ + ++ C++ I+ +A ++KKLF +E S +++ L + + + +
Sbjct: 102 RRRTNKIKLLVRDDGSSCSESQGIKLMAEHFFKKLFTSEQCES-VEEVLEAIPCKVDESI 160
Query: 340 KRELER*YNPDDVKKTVFGMC*LKAPGPGDVPSGQ*WAMILQRWHWN 200
EL + Y+ +++K+ +F M KAP P P+ + + HWN
Sbjct: 161 NEELCKAYSDEEIKEALFQMGPTKAPSPDGFPA------LFYQSHWN 201
Score = 53.5 bits (127), Expect(2) = 9e-16
Identities = 22/52 (42%), Positives = 37/52 (71%)
Frame = -2
Query: 156 IILLPKVQSLEFITQYIPISLCNITSKLIGKCITNMLKSIMPEIINPTQSAF 1
I+L+PK+ +L ++++ PISLCN+ K+ K + N LK +P+I++ QSAF
Sbjct: 229 IVLIPKIHNLVHLSKFRPISLCNVLYKIASKVLANRLKIFLPDIVSEFQSAF 280
>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1185
Score = 60.5 bits (145), Expect(2) = 5e-15
Identities = 26/54 (48%), Positives = 39/54 (72%)
Frame = -2
Query: 162 THIILLPKVQSLEFITQYIPISLCNITSKLIGKCITNMLKSIMPEIINPTQSAF 1
T ++++PKV + +TQ+ PISLCN+ K+I K + N LK ++PEII+ QSAF
Sbjct: 350 TTVVMIPKVDKPDRVTQFRPISLCNVVYKIISKMLANRLKCLLPEIISDQQSAF 403
Score = 45.1 bits (105), Expect(2) = 5e-15
Identities = 28/88 (31%), Positives = 46/88 (52%)
Frame = -1
Query: 520 RRRTNKIEGVTNEEVKWCTDMAEIQQVAVQYYKKLFGTEASFSLIDDALNEV*GIISKDM 341
RRR KI+G+ +E + TD + + Y++ LF E + + +L +V ++ DM
Sbjct: 225 RRRRKKIKGLIDENGCFQTDEDRMSNIVYGYFQNLFSAEVT-QIDGSSLLDVQRKVTGDM 283
Query: 340 KRELER*YNPDDVKKTVFGMC*LKAPGP 257
L Y ++VK +F + LKAPGP
Sbjct: 284 NFGLLAPYTAEEVKNALFSIGDLKAPGP 311