BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00014103
         (3300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containi...  1151   0.0  
ref|XP_002528404.1| pentatricopeptide repeat-containing protein,...  1108   0.0  
ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containi...  1073   0.0  
ref|XP_002869359.1| pentatricopeptide repeat-containing protein ...  1023   0.0  
ref|NP_567856.1| pentatricopeptide repeat-containing protein [Ar...  1019   0.0  

>ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
            chloroplastic-like [Vitis vinifera]
            gi|297745081|emb|CBI38673.3| unnamed protein product
            [Vitis vinifera]
          Length = 900

 Score = 1151 bits (2978), Expect = 0.0
 Identities = 565/885 (63%), Positives = 708/885 (80%), Gaps = 1/885 (0%)
 Frame = +1

Query: 118  IANPCCKLKCISVSRIDTEVFEPYESDLVNDMINDSNVALDSRENSILYEDIGKGRVNIW 297
            I N   ++K I++SR++ E ++  +S+ V D I   N   DS   +++ E     R +IW
Sbjct: 28   IINSFARVKPINISRLEAESWDTSDSNSVVDNIKTWNK--DSGSENLILES-SNFRNDIW 84

Query: 298  KRFRGIKKTTKDGKSREPFRRKSEKIRKGEPGSLFGEDRVMDN-RNLVDVDISCLGPVAS 474
            +R +G+K+  +    R+P    + K R     +   E + +++  + +DV+   +GP  S
Sbjct: 85   RRVQGVKRVRR----RDP----NSKFRSIRNDNGHEEQKSVNHFDDEIDVNEYGIGPELS 136

Query: 475  MEQCNRVLRELERENDSKAMKFFEWMKENGKLKQNVTAYNLILRVLGRKEDWCGAAAMIK 654
            +E+CN +L+ LER +DSK MKFFEWM+ENGKL+ NV+AYNL LRVLGR+ DW  A  MI 
Sbjct: 137  VERCNAILKGLERCSDSKTMKFFEWMRENGKLEGNVSAYNLALRVLGRRGDWDAAETMIW 196

Query: 655  EMTAESECELSYQVFNSVIYACYKRGLVEMGSTWFRTMLESGIEPNVATFGMLMSLYQKG 834
            EM  +S+C++++QV+N++IYACYK+G VE+G+ WFR MLE+G+ PNVATFGM+MSLYQKG
Sbjct: 197  EMNGDSDCQVNFQVYNTLIYACYKQGHVELGTKWFRLMLENGVRPNVATFGMVMSLYQKG 256

Query: 835  WIVEEAEFTFSKMRELKIACPLAYSAMITIYTRFGLYDKAEKIISFLKEDDIILNMDNWL 1014
            W V ++E+ FS+MR   I C  AYSAMITIYTR  LYDKAE++I F++ED +ILN++NWL
Sbjct: 257  WNVADSEYAFSQMRSFGITCQSAYSAMITIYTRMSLYDKAEEVIDFIQEDKVILNLENWL 316

Query: 1015 VMLNAYCQQGKLDDGEQVLATMTEAGFSPNIVAYNTMITGYGKMSNMSTAERLFCTLEKV 1194
            V+LNAY QQGKL + E+VL +M  AGFSPNIVAYN +ITGYGK SNM  A+ +F  L+ V
Sbjct: 317  VLLNAYSQQGKLQEAERVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNV 376

Query: 1195 GLDPDETTYRSMIEGWGRVNNYKKALFYYEQLKRSGFKPNSSNLYTLINLQVKHKDEVGA 1374
            GL+PDE+TYRSMIEGWGR  NYK+A +YY +LKR GFKPNSSNLYT+INLQ K+ D   A
Sbjct: 377  GLEPDESTYRSMIEGWGRAENYKEAEWYYNELKRLGFKPNSSNLYTMINLQAKYADGEDA 436

Query: 1375 INTVEDMVMIGCQMSSVLGLLLQACEKAEKFEAVPLIVKGSLYDHILTNQTSCSILVMAY 1554
              T++DM  IGCQ SSVLG LLQA E+A + + VPLI+KGS Y+++L NQTSCSILVMAY
Sbjct: 437  ARTLDDMKRIGCQYSSVLGTLLQAYERAGRIDRVPLILKGSFYEYVLVNQTSCSILVMAY 496

Query: 1555 VKNCLIDDALKVLKDKRWNDQIFEDNLYHLLICSCKELGHPENAVKIFNDMPKPDKPNVH 1734
            VK+CL+DDA+KVL++K+W D IFEDNLYHL+ICSCKELG  ENAVKI++ MP   KPN+H
Sbjct: 497  VKHCLVDDAIKVLQEKQWKDTIFEDNLYHLVICSCKELGRLENAVKIYSQMPN-KKPNLH 555

Query: 1735 ITCTMIDIYSMMNLFMEAENLYKSLRTSGVSLDMIGFSIVVRMYFKSGSLMEACSVLEEM 1914
            I CTMIDIYS +  F +AENLY  L++S +SLDMI FSIVVRMY KSGSL +ACSVLE M
Sbjct: 556  IMCTMIDIYSTLGRFSDAENLYLKLKSSEISLDMIAFSIVVRMYVKSGSLKDACSVLETM 615

Query: 1915 EKQNNIEPDIYLLRDMLRIYQRCDMFEKLGALYYKLQKTGISWDQEVYNCVINCCARALP 2094
            ++Q NI PDIYL  DMLRIYQ+C M +KL  LYY++ KTG++WD E+YNCVINCCARALP
Sbjct: 616  DEQKNIVPDIYLFCDMLRIYQQCGMLDKLQDLYYRILKTGVTWDSEMYNCVINCCARALP 675

Query: 2095 VDELSRIFEEMLQRGFTPSTITINVMLDVYGKSRLFKKARMVFWMAKKRGLVDVISYNTL 2274
            VDELSR+F+EML  GF P+TIT+NVMLDVYGKSRLFKKAR V W+A+KRGLVDVISYNT+
Sbjct: 676  VDELSRLFDEMLLHGFAPNTITLNVMLDVYGKSRLFKKARKVLWLARKRGLVDVISYNTI 735

Query: 2275 IAAYGQNRDLKKMNSTVKQMQLNGFSISLEAFNCMLDAYGKATQMEKFREVLLKMKESGC 2454
            IAAYGQ++DLKKM STV+QMQ NGFS+SLE +NCMLD+YGK  Q+E FR VL +MKES C
Sbjct: 736  IAAYGQSKDLKKMLSTVRQMQFNGFSVSLEVYNCMLDSYGKEGQIESFRSVLRRMKESSC 795

Query: 2455 SSDNYTYNIMINIYGEQEWIDEIGLVLMELKQTGLGPDLCSYNTLIKAYGIAGMVEEAVS 2634
            +SD+YTYNIMINIYGEQ WI+E+  VL ELK++GLGPDLCSYNTLIKAYGIAGMVE+AV 
Sbjct: 796  ASDHYTYNIMINIYGEQGWIEEVANVLTELKESGLGPDLCSYNTLIKAYGIAGMVEDAVV 855

Query: 2635 LVKEMRDNGIQPDRITYRNLVTALQKNDKFLEAVRWSLWMKQVGM 2769
            LVKEMR+NGIQPDRITY NL+ AL+KND+FLEAV+WSLWMKQ+G+
Sbjct: 856  LVKEMRENGIQPDRITYINLINALRKNDEFLEAVKWSLWMKQMGL 900



 Score = 94.4 bits (233), Expect = 2e-16
 Identities = 70/311 (22%), Positives = 141/311 (45%), Gaps = 7/311 (2%)
 Frame = +1

Query: 1885 MEACS------VLEEMEKQNNIEPDIYLLRDMLRIYQRCDMFEKLGALYYKLQ-KTGISW 2043
            +E CS        E M +   +E ++      LR+  R   ++    + +++   +    
Sbjct: 147  LERCSDSKTMKFFEWMRENGKLEGNVSAYNLALRVLGRRGDWDAAETMIWEMNGDSDCQV 206

Query: 2044 DQEVYNCVINCCARALPVDELSRIFEEMLQRGFTPSTITINVMLDVYGKSRLFKKARMVF 2223
            + +VYN +I  C +   V+  ++ F  ML+ G  P+  T  +++ +Y K      +   F
Sbjct: 207  NFQVYNTLIYACYKQGHVELGTKWFRLMLENGVRPNVATFGMVMSLYQKGWNVADSEYAF 266

Query: 2224 WMAKKRGLVDVISYNTLIAAYGQNRDLKKMNSTVKQMQLNGFSISLEAFNCMLDAYGKAT 2403
               +  G+    +Y+ +I  Y +     K    +  +Q +   ++LE +  +L+AY +  
Sbjct: 267  SQMRSFGITCQSAYSAMITIYTRMSLYDKAEEVIDFIQEDKVILNLENWLVLLNAYSQQG 326

Query: 2404 QMEKFREVLLKMKESGCSSDNYTYNIMINIYGEQEWIDEIGLVLMELKQTGLGPDLCSYN 2583
            ++++   VL  M+ +G S +   YN++I  YG+   +D    +   LK  GL PD  +Y 
Sbjct: 327  KLQEAERVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYR 386

Query: 2584 TLIKAYGIAGMVEEAVSLVKEMRDNGIQPDRITYRNLVTALQKNDKFLEAVRWSLWMKQV 2763
            ++I+ +G A   +EA     E++  G +P+      ++    K     +A R    MK++
Sbjct: 387  SMIEGWGRAENYKEAEWYYNELKRLGFKPNSSNLYTMINLQAKYADGEDAARTLDDMKRI 446

Query: 2764 GM*YSMMMFVL 2796
            G  YS ++  L
Sbjct: 447  GCQYSSVLGTL 457


>ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532192|gb|EEF33997.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 955

 Score = 1108 bits (2865), Expect = 0.0
 Identities = 552/894 (61%), Positives = 688/894 (76%), Gaps = 7/894 (0%)
 Frame = +1

Query: 109  GGSIANPCCKLKCISVSRIDTEVFEP-----YESDLVNDMINDSNVALDSRENSILYEDI 273
            G  I         + VSRI+TE+FE        +DL ++ IN+    +D   NS      
Sbjct: 80   GACIITTLTTFSPVKVSRIETELFEDDVVLSTSNDLPHECINEG--LIDRNPNS------ 131

Query: 274  GKGRVNIWKRFRGIKKTTKDGKSREPFRRKSEKIRKGEPGSLFGEDRVMDNRNLVDVDIS 453
               +  I K++RG  K  K GK +  F+   +  R G    +  ED  ++   L DV+ S
Sbjct: 132  ---KREIRKKYRGGAK--KRGKRKVGFKFNYK--RNGIEQEI--EDLFVEGGEL-DVNYS 181

Query: 454  CLGPVASMEQCNRVLRELER-ENDSKAMKFFEWMKENGKLKQNVTAYNLILRVLGRKEDW 630
             +    S+E CN +L+ LER  +D K+++FFEWM+ NGKL++N+ AYN+ILRVLGR+EDW
Sbjct: 182  VIHCNLSLEHCNLILKRLERCSSDDKSLRFFEWMRNNGKLEKNLNAYNVILRVLGRREDW 241

Query: 631  CGAAAMIKEMTAESECELSYQVFNSVIYACYKRGLVEMGSTWFRTMLESGIEPNVATFGM 810
              A  MI E++     EL ++VFN++IYAC +RG + +G  WFR MLE G++PN+ATFGM
Sbjct: 242  GTAERMIGEVSDSFGSELDFRVFNTLIYACSRRGNMLLGGKWFRMMLELGVQPNIATFGM 301

Query: 811  LMSLYQKGWIVEEAEFTFSKMRELKIACPLAYSAMITIYTRFGLYDKAEKIISFLKEDDI 990
            LM LYQKGW VEEAEF FSKMR   I C  AYSAMITIYTR  LY+KAE+II  + ED +
Sbjct: 302  LMGLYQKGWNVEEAEFVFSKMRSFGIICQSAYSAMITIYTRLSLYNKAEEIIGLMGEDKV 361

Query: 991  ILNMDNWLVMLNAYCQQGKLDDGEQVLATMTEAGFSPNIVAYNTMITGYGKMSNMSTAER 1170
             +N++NWLV+LNAY QQG+L++ EQVL  M EA FSPNIVA+NT+ITGYGK+SNM+ A+R
Sbjct: 362  AMNVENWLVLLNAYSQQGRLEEAEQVLVEMQEASFSPNIVAFNTLITGYGKLSNMAAAQR 421

Query: 1171 LFCTLEKVGLDPDETTYRSMIEGWGRVNNYKKALFYYEQLKRSGFKPNSSNLYTLINLQV 1350
            LF  ++  GL+PDETTYRSMIEGWGR  NYK+A +YY++LKR G+ PNSSNLYTLINLQ 
Sbjct: 422  LFLDIQNAGLEPDETTYRSMIEGWGRTGNYKEAEWYYKELKRLGYMPNSSNLYTLINLQA 481

Query: 1351 KHKDEVGAINTVEDMVMIGCQMSSVLGLLLQACEKAEKFEAVPLIVKGSLYDHILTNQTS 1530
            KH D+ GAI T++DM+ IGCQ SS+LG LL+A EKA +   VPL++K S Y H+L NQTS
Sbjct: 482  KHDDDEGAIGTLDDMLKIGCQHSSILGTLLKAYEKAGRINKVPLLLKDSFYQHVLVNQTS 541

Query: 1531 CSILVMAYVKNCLIDDALKVLKDKRWNDQIFEDNLYHLLICSCKELGHPENAVKIFNDMP 1710
            CSILVM YVKNCL+D+ALKVL DK+W DQ FEDNLYHLLICSCKELG+ E+AV+I+  MP
Sbjct: 542  CSILVMTYVKNCLVDEALKVLGDKKWKDQTFEDNLYHLLICSCKELGNLESAVRIYTQMP 601

Query: 1711 K-PDKPNVHITCTMIDIYSMMNLFMEAENLYKSLRTSGVSLDMIGFSIVVRMYFKSGSLM 1887
            K  DKPN+HI+CT+IDIYS++  F EAE LY+ L+ SG++LDM+ FSIVVRMY K+GSL 
Sbjct: 602  KSEDKPNLHISCTVIDIYSVLGCFAEAEKLYQQLKCSGIALDMVAFSIVVRMYVKAGSLK 661

Query: 1888 EACSVLEEMEKQNNIEPDIYLLRDMLRIYQRCDMFEKLGALYYKLQKTGISWDQEVYNCV 2067
            +ACSVL  MEKQ NI PDIYL RDMLRIYQ+C M  KL  LY+K+ K+ + WDQE+YNC+
Sbjct: 662  DACSVLATMEKQENIIPDIYLYRDMLRIYQQCGMMSKLKDLYHKILKSEVDWDQELYNCI 721

Query: 2068 INCCARALPVDELSRIFEEMLQRGFTPSTITINVMLDVYGKSRLFKKARMVFWMAKKRGL 2247
            INCCARALPV ELSR+F EMLQRGF+P+TIT NVMLDVYGK++LF KA+ +FWMA+KRGL
Sbjct: 722  INCCARALPVGELSRLFSEMLQRGFSPNTITFNVMLDVYGKAKLFNKAKELFWMARKRGL 781

Query: 2248 VDVISYNTLIAAYGQNRDLKKMNSTVKQMQLNGFSISLEAFNCMLDAYGKATQMEKFREV 2427
            VDVISYNT+IAAYG N+D K M S V+ MQ +GFS+SLEA+NCMLD YGK  QME FR V
Sbjct: 782  VDVISYNTVIAAYGHNKDFKNMASAVRNMQFDGFSVSLEAYNCMLDGYGKEGQMECFRNV 841

Query: 2428 LLKMKESGCSSDNYTYNIMINIYGEQEWIDEIGLVLMELKQTGLGPDLCSYNTLIKAYGI 2607
            L +MK+S  +SD+YTYNIMINIYGEQ WIDE+  VL EL++ GL PDLCSYNTLIKAYG+
Sbjct: 842  LQRMKQSSYTSDHYTYNIMINIYGEQGWIDEVAGVLTELRECGLRPDLCSYNTLIKAYGV 901

Query: 2608 AGMVEEAVSLVKEMRDNGIQPDRITYRNLVTALQKNDKFLEAVRWSLWMKQVGM 2769
            AGMVE+A+ LVKEMR+NGI+PD+ITY NL+TALQKNDK+LEAV+WSLWMKQ+G+
Sbjct: 902  AGMVEDAIDLVKEMRENGIEPDKITYSNLITALQKNDKYLEAVKWSLWMKQLGL 955


>ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
            chloroplastic-like [Cucumis sativus]
          Length = 894

 Score = 1073 bits (2775), Expect = 0.0
 Identities = 531/887 (59%), Positives = 680/887 (76%), Gaps = 16/887 (1%)
 Frame = +1

Query: 151  SVSRIDTEVFE-PYESDLVNDMIN--DSNVALDSRENSILYEDIGKGRVNIWKRFRGIKK 321
            S+   D+  F+ P  S L++D  +    N  L   ++SI+Y      RV+   +   +++
Sbjct: 9    SLHSFDSNKFDFPLNSPLLSDYCSLFSINAHLHLNKSSIIYS---LARVHKPSKVSQVEQ 65

Query: 322  TTKD-GKSR--EPFRRK----SEKIRKGEPGSLFG-----EDRVMDNRNLVDVDISCLGP 465
               D  +SR  E   RK    S+K  K   GS F       D ++ N   +DV+ S +  
Sbjct: 66   DASDVSQSRFDEIVARKKYFTSKKPSKRAAGSHFSFSRNCNDNILFNGGELDVNYSTISS 125

Query: 466  VASMEQCNRVLRELERENDSKAMKFFEWMKENGKLKQNVTAYNLILRVLGRKEDWCGAAA 645
              S+E CN +L+ LE+ NDSK + FFEWM+ NGKLK NV+AYNL+LRVLGR+EDW  A  
Sbjct: 126  DLSLEDCNAILKRLEKCNDSKTLGFFEWMRSNGKLKHNVSAYNLVLRVLGRQEDWDAAEK 185

Query: 646  MIKEMTAESECELSYQVFNSVIYACYKRGLVEMGSTWFRTMLESGIEPNVATFGMLMSLY 825
            +I+E+ AE   +L +QVFN++IYACYK   VE G+ WFR MLE  ++PNVATFGMLM LY
Sbjct: 186  LIEEVRAELGSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLMGLY 245

Query: 826  QKGWIVEEAEFTFSKMRELKIACPLAYSAMITIYTRFGLYDKAEKIISFLKEDDIILNMD 1005
            QK   ++E+EF F++MR   I C  AY++MITIY R  LYDKAE++I  ++ED +I N++
Sbjct: 246  QKKCDIKESEFAFNQMRNFGIVCETAYASMITIYIRMNLYDKAEEVIQLMQEDKVIPNLE 305

Query: 1006 NWLVMLNAYCQQGKLDDGEQVLATMTEAGFSPNIVAYNTMITGYGKMSNMSTAERLFCTL 1185
            NW+VMLNAYCQQGK+++ E V A+M EAGFS NI+AYNT+ITGYGK SNM TA+RLF  +
Sbjct: 306  NWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGI 365

Query: 1186 EKVGLDPDETTYRSMIEGWGRVNNYKKALFYYEQLKRSGFKPNSSNLYTLINLQVKHKDE 1365
            +  G++PDETTYRSMIEGWGR  NYK A +YY++LKR G+ PNSSNL+TLINLQ KH+DE
Sbjct: 366  KNSGVEPDETTYRSMIEGWGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINLQAKHEDE 425

Query: 1366 VGAINTVEDMVMIGCQMSSVLGLLLQACEKAEKFEAVPLIVKGSLYDHILTNQTSCSILV 1545
             G + T+ DM+ IGC+ SS++G +LQA EKA + ++VP+++ GS Y  +L++QTSCSILV
Sbjct: 426  AGTLKTLNDMLKIGCRPSSIVGNVLQAYEKARRMKSVPVLLTGSFYRKVLSSQTSCSILV 485

Query: 1546 MAYVKNCLIDDALKVLKDKRWNDQIFEDNLYHLLICSCKELGHPENAVKIFNDMPK-PDK 1722
            MAYVK+CL+DDALKVL++K W D  FE+NLYHLLICSCKELGH ENA+KI+  +PK  +K
Sbjct: 486  MAYVKHCLVDDALKVLREKEWKDHHFEENLYHLLICSCKELGHLENAIKIYTQLPKRENK 545

Query: 1723 PNVHITCTMIDIYSMMNLFMEAENLYKSLRTSGVSLDMIGFSIVVRMYFKSGSLMEACSV 1902
            PN+HITCTMIDIYS+M  F + E LY SLR+SG+ LD+I +++VVRMY K+GSL +ACSV
Sbjct: 546  PNLHITCTMIDIYSIMGRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSV 605

Query: 1903 LEEMEKQNNIEPDIYLLRDMLRIYQRCDMFEKLGALYYKLQKTGISWDQEVYNCVINCCA 2082
            L+ M +Q +I PDIYLLRDMLRIYQRC M  KL  LYY++ K+G+SWDQE+YNCVINCC+
Sbjct: 606  LDLMAEQQDIVPDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSWDQEMYNCVINCCS 665

Query: 2083 RALPVDELSRIFEEMLQRGFTPSTITINVMLDVYGKSRLFKKARMVFWMAKKRGLVDVIS 2262
            RALPVDELSR+F+EMLQ GF P+T+T+NVMLDVYGKS+LF KAR +F +A+KRGLVD IS
Sbjct: 666  RALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGLVDAIS 725

Query: 2263 YNTLIAAYGQNRDLKKMNSTVKQMQLNGFSISLEAFNCMLDAYGKATQMEKFREVLLKMK 2442
            YNT+I+ YG+N+D K M+STV++M+ NGFS+SLEA+NCMLDAYGK  QME FR VL +M+
Sbjct: 726  YNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQ 785

Query: 2443 ESGCSSDNYTYNIMINIYGEQEWIDEIGLVLMELKQTGLGPDLCSYNTLIKAYGIAGMVE 2622
            E+    D+YTYNIMINIYGEQ WIDE+  VL ELK  GL PDL SYNTLIKAYGIAGMVE
Sbjct: 786  ETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVE 845

Query: 2623 EAVSLVKEMRDNGIQPDRITYRNLVTALQKNDKFLEAVRWSLWMKQV 2763
            EA  LVKEMR+  I+PDRITY N++ ALQ+ND+FLEAV+WSLWMKQ+
Sbjct: 846  EAAQLVKEMREKRIEPDRITYINMIRALQRNDQFLEAVKWSLWMKQM 892


>ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297315195|gb|EFH45618.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 906

 Score = 1023 bits (2645), Expect = 0.0
 Identities = 509/879 (57%), Positives = 659/879 (74%), Gaps = 1/879 (0%)
 Frame = +1

Query: 136  KLKCISVSRIDTEVFEPYESDLVNDMINDSNVALDSRENSILYEDIGKGRVNIWKRFRGI 315
            ++K I VSR+D E  E        + I+  +V ++   NS L    G   V    +    
Sbjct: 50   RVKKIRVSRLDIEAKE------AENAIDSDSVNVERSSNSKLK---GSNTVTSGNQ---- 96

Query: 316  KKTTKDGKSREPFRRKSEKIRKGEPGSLFGEDRVMDNRNLVDVDISCLGPVASMEQCNRV 495
            + T KD   +  FRR+S  +           + +  N   +DV+ S + P  S+E  N +
Sbjct: 97   RGTKKDVARKFSFRRESNDLEL---------ENLFVNNGEMDVNYSAIKPGLSLEHYNAI 147

Query: 496  LRELERENDSKAMKFFEWMKENGKLKQNVTAYNLILRVLGRKEDWCGAAAMIKEMTAESE 675
            L+ LE  +D+ A+KFF+WM+  GKL+ N  AY+LILRVLGR+E+W  A  +I+E+     
Sbjct: 148  LKRLESCSDTNAIKFFDWMRCKGKLEGNFGAYSLILRVLGRREEWNRAEDLIEELCGFQG 207

Query: 676  CELSYQVFNSVIYACYKRGLVEMGSTWFRTMLESGIEPNVATFGMLMSLYQKGWIVEEAE 855
             + S+QVFN+VIYAC K+G V++ S WF+ MLE G+ PNVAT GMLM LYQK W V+EAE
Sbjct: 208  FQQSFQVFNTVIYACTKKGNVKLASKWFQMMLELGVRPNVATIGMLMGLYQKNWNVDEAE 267

Query: 856  FTFSKMRELKIACPLAYSAMITIYTRFGLYDKAEKIISFLKEDDIILNMDNWLVMLNAYC 1035
            F FS MR+ +I C  AYS+MITIYTR  LY+KAE++I+ +K+D + L ++NWLVMLNAY 
Sbjct: 268  FAFSHMRKFEIVCESAYSSMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLVMLNAYS 327

Query: 1036 QQGKLDDGEQVLATMTEAGFSPNIVAYNTMITGYGKMSNMSTAERLFCTLEKVGLDPDET 1215
            QQGK++  E VL +M  AGF+PNI+AYNT+ITGYGK+S M  A+ LF  L  +GL+PDET
Sbjct: 328  QQGKMEQAESVLISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRLSDIGLEPDET 387

Query: 1216 TYRSMIEGWGRVNNYKKALFYYEQLKRSGFKPNSSNLYTLINLQVKHKDEVGAINTVEDM 1395
            +YRSMIEGWGR +NY++A  YY++LKR G+KPNSSNL+TLINLQ K+ D  GAI T+EDM
Sbjct: 388  SYRSMIEGWGRADNYEEANHYYQELKRCGYKPNSSNLFTLINLQAKYGDRDGAIKTIEDM 447

Query: 1396 VMIGCQMSSVLGLLLQACEKAEKFEAVPLIVKGSLYDHILTNQTSCSILVMAYVKNCLID 1575
              IGCQ  S+LG++LQA EK  K + VP ++KGS ++HI  NQTS SILVMAY+K+ ++D
Sbjct: 448  TSIGCQYPSILGIILQAYEKVGKIDVVPYLLKGSFHNHIRLNQTSFSILVMAYIKHGMVD 507

Query: 1576 DALKVLKDKRWNDQIFEDNLYHLLICSCKELGHPENAVKIFN-DMPKPDKPNVHITCTMI 1752
            D L +L++K+W D  FE +LYHLLICSCKE G   +AVK++N  M   ++ N+HIT TMI
Sbjct: 508  DCLALLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKLYNHTMESDEEINLHITSTMI 567

Query: 1753 DIYSMMNLFMEAENLYKSLRTSGVSLDMIGFSIVVRMYFKSGSLMEACSVLEEMEKQNNI 1932
            DIY++M  F EAE LY +L++SGV LD IGFSIVVRMY K+GSL EACSVLE M++Q +I
Sbjct: 568  DIYTVMGEFGEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDI 627

Query: 1933 EPDIYLLRDMLRIYQRCDMFEKLGALYYKLQKTGISWDQEVYNCVINCCARALPVDELSR 2112
             PD+YL RDMLRIYQ+CD+ +KL  LYY++QK+GI WDQE+YNCVINCCARALP+DELSR
Sbjct: 628  VPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGIHWDQEMYNCVINCCARALPLDELSR 687

Query: 2113 IFEEMLQRGFTPSTITINVMLDVYGKSRLFKKARMVFWMAKKRGLVDVISYNTLIAAYGQ 2292
             FEEM++ GFTP+T+T NV+LDVYGK++LFKK   +F +AK+ G+VDVISYNT+IAAYG+
Sbjct: 688  TFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGK 747

Query: 2293 NRDLKKMNSTVKQMQLNGFSISLEAFNCMLDAYGKATQMEKFREVLLKMKESGCSSDNYT 2472
            N+D   M+S +K MQ +GFS+SLEA+N +LDAYGK  QMEKFR +L +MK+S    D+YT
Sbjct: 748  NKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYT 807

Query: 2473 YNIMINIYGEQEWIDEIGLVLMELKQTGLGPDLCSYNTLIKAYGIAGMVEEAVSLVKEMR 2652
            YNIMINIYGEQ WIDE+  VL ELK++GLGPDLCSYNTLIKAYGI GMVEEAV LVKEMR
Sbjct: 808  YNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMR 867

Query: 2653 DNGIQPDRITYRNLVTALQKNDKFLEAVRWSLWMKQVGM 2769
               I PD++TY NLVTAL+KND+FLEA++WSLWMKQ+G+
Sbjct: 868  GKNITPDKVTYTNLVTALRKNDEFLEAIKWSLWMKQMGI 906



 Score =  103 bits (257), Expect = 3e-19
 Identities = 84/353 (23%), Positives = 160/353 (45%), Gaps = 7/353 (1%)
 Frame = +1

Query: 1780 MEAENLYKSLRTSGVSLDMIGFSIVVRMYFKSGSLMEACS------VLEEMEKQNNIEPD 1941
            +E ENL+ +     V+   I   + +  Y      +E+CS        + M  +  +E +
Sbjct: 116  LELENLFVNNGEMDVNYSAIKPGLSLEHYNAILKRLESCSDTNAIKFFDWMRCKGKLEGN 175

Query: 1942 IYLLRDMLRIYQRCDMFEKLGALYYKLQK-TGISWDQEVYNCVINCCARALPVDELSRIF 2118
                  +LR+  R + + +   L  +L    G     +V+N VI  C +   V   S+ F
Sbjct: 176  FGAYSLILRVLGRREEWNRAEDLIEELCGFQGFQQSFQVFNTVIYACTKKGNVKLASKWF 235

Query: 2119 EEMLQRGFTPSTITINVMLDVYGKSRLFKKARMVFWMAKKRGLVDVISYNTLIAAYGQNR 2298
            + ML+ G  P+  TI +++ +Y K+    +A   F   +K  +V   +Y+++I  Y + R
Sbjct: 236  QMMLELGVRPNVATIGMLMGLYQKNWNVDEAEFAFSHMRKFEIVCESAYSSMITIYTRLR 295

Query: 2299 DLKKMNSTVKQMQLNGFSISLEAFNCMLDAYGKATQMEKFREVLLKMKESGCSSDNYTYN 2478
              +K    +  M+ +   + LE +  ML+AY +  +ME+   VL+ M+ +G + +   YN
Sbjct: 296  LYEKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGKMEQAESVLISMEAAGFAPNIIAYN 355

Query: 2479 IMINIYGEQEWIDEIGLVLMELKQTGLGPDLCSYNTLIKAYGIAGMVEEAVSLVKEMRDN 2658
             +I  YG+   ++    +   L   GL PD  SY ++I+ +G A   EEA    +E++  
Sbjct: 356  TLITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRSMIEGWGRADNYEEANHYYQELKRC 415

Query: 2659 GIQPDRITYRNLVTALQKNDKFLEAVRWSLWMKQVGM*YSMMMFVLYH*QPKI 2817
            G +P+      L+    K      A++    M  +G  Y  ++ ++     K+
Sbjct: 416  GYKPNSSNLFTLINLQAKYGDRDGAIKTIEDMTSIGCQYPSILGIILQAYEKV 468


>ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|223635625|sp|O65567.2|PP342_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g30825, chloroplastic; Flags: Precursor
            gi|332660415|gb|AEE85815.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score = 1019 bits (2635), Expect = 0.0
 Identities = 506/861 (58%), Positives = 648/861 (75%), Gaps = 2/861 (0%)
 Frame = +1

Query: 193  SDLVNDMINDSNVALDSRENSILYEDIGKGRVNIWKRFRGIKKTTKDGKSRE-PFRRKSE 369
            S  V D I  S++  ++ EN+I          +   +  G ++ TK   +R+  FRR S 
Sbjct: 53   STRVLDKIRVSSLGTEANENAINSASAAPVERSRSSKLSGDQRGTKKYVARKFSFRRGSN 112

Query: 370  KIRKGEPGSLFGEDRVMDNRNLVDVDISCLGPVASMEQCNRVLRELERENDSKAMKFFEW 549
             +           + +  N   +DV+ S + P  S+E CN +L+ LE  +D+ A+KFF+W
Sbjct: 113  DLEL---------ENLFVNNGEIDVNYSAIKPGQSLEHCNGILKRLESCSDTNAIKFFDW 163

Query: 550  MKENGKLKQNVTAYNLILRVLGRKEDWCGAAAMIKEMTAESECELSYQVFNSVIYACYKR 729
            M+ NGKL  N  AY+LILRVLGR+E+W  A  +IKE+    E + SYQVFN+VIYAC K+
Sbjct: 164  MRCNGKLVGNFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKK 223

Query: 730  GLVEMGSTWFRTMLESGIEPNVATFGMLMSLYQKGWIVEEAEFTFSKMRELKIACPLAYS 909
            G V++ S WF  MLE G+ PNVAT GMLM LYQK W VEEAEF FS MR+  I C  AYS
Sbjct: 224  GNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYS 283

Query: 910  AMITIYTRFGLYDKAEKIISFLKEDDIILNMDNWLVMLNAYCQQGKLDDGEQVLATMTEA 1089
            +MITIYTR  LYDKAE++I  +K+D + L ++NWLVMLNAY QQGK++  E +L +M  A
Sbjct: 284  SMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAA 343

Query: 1090 GFSPNIVAYNTMITGYGKMSNMSTAERLFCTLEKVGLDPDETTYRSMIEGWGRVNNYKKA 1269
            GFSPNI+AYNT+ITGYGK+  M  A+ LF  L  +GL+PDET+YRSMIEGWGR +NY++A
Sbjct: 344  GFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEA 403

Query: 1270 LFYYEQLKRSGFKPNSSNLYTLINLQVKHKDEVGAINTVEDMVMIGCQMSSVLGLLLQAC 1449
              YY++LKR G+KPNS NL+TLINLQ K+ D  GAI T+EDM  IGCQ SS+LG++LQA 
Sbjct: 404  KHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGCQYSSILGIILQAY 463

Query: 1450 EKAEKFEAVPLIVKGSLYDHILTNQTSCSILVMAYVKNCLIDDALKVLKDKRWNDQIFED 1629
            EK  K + VP ++KGS ++HI  NQTS S LVMAYVK+ ++DD L +L++K+W D  FE 
Sbjct: 464  EKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLREKKWRDSAFES 523

Query: 1630 NLYHLLICSCKELGHPENAVKIFN-DMPKPDKPNVHITCTMIDIYSMMNLFMEAENLYKS 1806
            +LYHLLICSCKE G   +AVKI+N  M   ++ N+HIT TMIDIY++M  F EAE LY +
Sbjct: 524  HLYHLLICSCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIYTVMGEFSEAEKLYLN 583

Query: 1807 LRTSGVSLDMIGFSIVVRMYFKSGSLMEACSVLEEMEKQNNIEPDIYLLRDMLRIYQRCD 1986
            L++SGV LD IGFSIVVRMY K+GSL EACSVLE M++Q +I PD+YL RDMLRIYQ+CD
Sbjct: 584  LKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCD 643

Query: 1987 MFEKLGALYYKLQKTGISWDQEVYNCVINCCARALPVDELSRIFEEMLQRGFTPSTITIN 2166
            + +KL  LYY+++K+GI W+QE+YNCVINCCARALP+DELS  FEEM++ GFTP+T+T N
Sbjct: 644  LQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFN 703

Query: 2167 VMLDVYGKSRLFKKARMVFWMAKKRGLVDVISYNTLIAAYGQNRDLKKMNSTVKQMQLNG 2346
            V+LDVYGK++LFKK   +F +AK+ G+VDVISYNT+IAAYG+N+D   M+S +K MQ +G
Sbjct: 704  VLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDG 763

Query: 2347 FSISLEAFNCMLDAYGKATQMEKFREVLLKMKESGCSSDNYTYNIMINIYGEQEWIDEIG 2526
            FS+SLEA+N +LDAYGK  QMEKFR +L +MK+S    D+YTYNIMINIYGEQ WIDE+ 
Sbjct: 764  FSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVA 823

Query: 2527 LVLMELKQTGLGPDLCSYNTLIKAYGIAGMVEEAVSLVKEMRDNGIQPDRITYRNLVTAL 2706
             VL ELK++GLGPDLCSYNTLIKAYGI GMVEEAV LVKEMR   I PD++TY NLVTAL
Sbjct: 824  DVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTYTNLVTAL 883

Query: 2707 QKNDKFLEAVRWSLWMKQVGM 2769
            ++ND+FLEA++WSLWMKQ+G+
Sbjct: 884  RRNDEFLEAIKWSLWMKQMGI 904



 Score = 99.4 bits (246), Expect = 6e-18
 Identities = 68/256 (26%), Positives = 124/256 (48%)
 Frame = +1

Query: 2050 EVYNCVINCCARALPVDELSRIFEEMLQRGFTPSTITINVMLDVYGKSRLFKKARMVFWM 2229
            +V+N VI  C +   V   S+ F  ML+ G  P+  TI +++ +Y K+   ++A   F  
Sbjct: 211  QVFNTVIYACTKKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSH 270

Query: 2230 AKKRGLVDVISYNTLIAAYGQNRDLKKMNSTVKQMQLNGFSISLEAFNCMLDAYGKATQM 2409
             +K G+V   +Y+++I  Y + R   K    +  M+ +   + LE +  ML+AY +  +M
Sbjct: 271  MRKFGIVCESAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKM 330

Query: 2410 EKFREVLLKMKESGCSSDNYTYNIMINIYGEQEWIDEIGLVLMELKQTGLGPDLCSYNTL 2589
            E    +L+ M+ +G S +   YN +I  YG+   ++    +   L   GL PD  SY ++
Sbjct: 331  ELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSM 390

Query: 2590 IKAYGIAGMVEEAVSLVKEMRDNGIQPDRITYRNLVTALQKNDKFLEAVRWSLWMKQVGM 2769
            I+ +G A   EEA    +E++  G +P+      L+    K      A++    M  +G 
Sbjct: 391  IEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGC 450

Query: 2770 *YSMMMFVLYH*QPKI 2817
             YS ++ ++     K+
Sbjct: 451  QYSSILGIILQAYEKV 466