BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00014050
         (782 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518926.1| RNA-binding protein, putative [Ricinus commu...   199   4e-49
ref|NP_001031131.1| CTC-interacting domain 11 protein [Arabidops...   197   3e-48
ref|NP_174556.1| CTC-interacting domain 11 protein [Arabidopsis ...   197   3e-48
ref|XP_002893742.1| hypothetical protein ARALYDRAFT_473465 [Arab...   194   2e-47
ref|XP_003602357.1| Splicing factor, arginine/serine-rich [Medic...   191   2e-46

>ref|XP_002518926.1| RNA-binding protein, putative [Ricinus communis]
           gi|223541913|gb|EEF43459.1| RNA-binding protein,
           putative [Ricinus communis]
          Length = 379

 Score =  199 bits (507), Expect = 4e-49
 Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 6/205 (2%)
 Frame = +2

Query: 185 NHRVEMLTDHHHRLNGDDGVLKMNGVKGLDSREMSELEEMFSKLNPMAQEFVPPSLFQN- 361
           N +V  L  HH R +G   +           R++ EL+E+FSKLNPMA+EFVPPSL  N 
Sbjct: 74  NLQVAQLHHHHQRSSGGGDL----------QRDIRELQELFSKLNPMAEEFVPPSLANNK 123

Query: 362 -----IHILNNVSAAYFAANSTPFMPMPFGPISPINGVLNGNGATGQRRKNVNQWKRRTV 526
                IH LN ++  ++  N+  + P      +  NG LNG+ A  +R+KN NQ KRR +
Sbjct: 124 ISNNYIHGLNGLNVGFYTNNNN-YDPAFMLTNASRNGQLNGSAA--RRKKNYNQGKRR-L 179

Query: 527 GGRSTIAQREDVVRRTVYVSDIDHSVTEEMLAGLFLHCGQVVDCRICGDPHSVLRFAFVE 706
             R+++AQRE+++RRTVYVSDID  VTEE LA LF+ CGQVVDCRICGDP+SVLRFAF+E
Sbjct: 180 NSRTSMAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIE 239

Query: 707 FTDEEGALAALSLSGTVLGYYPVKV 781
           FT EEGA AAL+L+GTVLGYYPV+V
Sbjct: 240 FTHEEGARAALNLAGTVLGYYPVRV 264



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 71/232 (30%), Positives = 98/232 (42%), Gaps = 19/232 (8%)
 Frame = +2

Query: 143 GTNAMN-HFQVNGNNNHRVEMLTD--HHHRLNGDDGVLKMN---GVKGLDSR-EMSELEE 301
           G N +N  F  N NN     MLT+   + +LNG     K N   G + L+SR  M++ EE
Sbjct: 131 GLNGLNVGFYTNNNNYDPAFMLTNASRNGQLNGSAARRKKNYNQGKRRLNSRTSMAQREE 190

Query: 302 MF------SKLNPMAQEFVPPSLFQNIHILNNVSAAYFAANSTPFMPMPFGPISPINGVL 463
           +       S ++    E    +LF     + +        +   F  + F         L
Sbjct: 191 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTHEEGARAAL 250

Query: 464 NGNGAT-GQRRKNVNQWKRRTVGGRSTIAQREDVVR----RTVYVSDIDHSVTEEMLAGL 628
           N  G   G     V   K        T   R D  R    RT+Y ++ID  VT+  +   
Sbjct: 251 NLAGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCIRTIYCTNIDKKVTQADVKLF 310

Query: 629 FLH-CGQVVDCRICGDPHSVLRFAFVEFTDEEGALAALSLSGTVLGYYPVKV 781
           F   CG+V   R+ GD H   R AFVEF   E A+AAL+ SG VLG  P++V
Sbjct: 311 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 362


>ref|NP_001031131.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
           gi|332193409|gb|AEE31530.1| CTC-interacting domain 11
           protein [Arabidopsis thaliana]
          Length = 406

 Score =  197 bits (500), Expect = 3e-48
 Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)
 Frame = +2

Query: 179 NNNHRVEMLTDHHHRLNGDDG--VLKMNGVKGLDS--REMSELEEMFSKLNPMAQEFVPP 346
           N++ R++ +  H   L    G  V + +GV G +S  R+M EL+E+FSKLNPMA+EFVPP
Sbjct: 44  NHHSRIDQVLRHDQGLYSKIGSHVARSDGVDGGESFKRDMRELQELFSKLNPMAEEFVPP 103

Query: 347 SLFQNIHILNNVSAAYFAANSTPFMPMPFGPISPINGVLNGNGATGQRRKNVNQWKRRTV 526
           SL  N    N V+  +F +  + F    F      NG         +R+K+  Q KRR +
Sbjct: 104 SL--NKQGGNGVNGGFFTSAGSFFRNNGFAGTG--NGGYGNENGGFRRKKSFGQGKRR-M 158

Query: 527 GGRSTIAQREDVVRRTVYVSDIDHSVTEEMLAGLFLHCGQVVDCRICGDPHSVLRFAFVE 706
             R+++AQREDV+RRTVYVSD+D  VTEE LAGLF+ CGQVVDCRICGDP+SVLRFAF+E
Sbjct: 159 NARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIE 218

Query: 707 FTDEEGALAALSLSGTVLGYYPVKV 781
           FTDEEGA+ AL+LSGT+LG+YPVKV
Sbjct: 219 FTDEEGAMTALNLSGTMLGFYPVKV 243



 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +2

Query: 557 DVVRRTVYVSDIDHSVTEEMLAGLF-LHCGQVVDCRICGDPHSVLRFAFVEFTDEEGALA 733
           ++  RT+Y ++ID  VT+  +   F   CG+V   R+ GD     R AFVEF   E A+A
Sbjct: 266 EMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIA 325

Query: 734 ALSLSGTVLGYYPVK 778
           AL+ SG VLG  P++
Sbjct: 326 ALNCSGVVLGSLPIR 340


>ref|NP_174556.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
           gi|6714278|gb|AAF25974.1|AC017118_11 F6N18.17
           [Arabidopsis thaliana] gi|332193408|gb|AEE31529.1|
           CTC-interacting domain 11 protein [Arabidopsis thaliana]
          Length = 358

 Score =  197 bits (500), Expect = 3e-48
 Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)
 Frame = +2

Query: 179 NNNHRVEMLTDHHHRLNGDDG--VLKMNGVKGLDS--REMSELEEMFSKLNPMAQEFVPP 346
           N++ R++ +  H   L    G  V + +GV G +S  R+M EL+E+FSKLNPMA+EFVPP
Sbjct: 44  NHHSRIDQVLRHDQGLYSKIGSHVARSDGVDGGESFKRDMRELQELFSKLNPMAEEFVPP 103

Query: 347 SLFQNIHILNNVSAAYFAANSTPFMPMPFGPISPINGVLNGNGATGQRRKNVNQWKRRTV 526
           SL  N    N V+  +F +  + F    F      NG         +R+K+  Q KRR +
Sbjct: 104 SL--NKQGGNGVNGGFFTSAGSFFRNNGFAGTG--NGGYGNENGGFRRKKSFGQGKRR-M 158

Query: 527 GGRSTIAQREDVVRRTVYVSDIDHSVTEEMLAGLFLHCGQVVDCRICGDPHSVLRFAFVE 706
             R+++AQREDV+RRTVYVSD+D  VTEE LAGLF+ CGQVVDCRICGDP+SVLRFAF+E
Sbjct: 159 NARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIE 218

Query: 707 FTDEEGALAALSLSGTVLGYYPVKV 781
           FTDEEGA+ AL+LSGT+LG+YPVKV
Sbjct: 219 FTDEEGAMTALNLSGTMLGFYPVKV 243



 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +2

Query: 557 DVVRRTVYVSDIDHSVTEEMLAGLF-LHCGQVVDCRICGDPHSVLRFAFVEFTDEEGALA 733
           ++  RT+Y ++ID  VT+  +   F   CG+V   R+ GD     R AFVEF   E A+A
Sbjct: 266 EMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIA 325

Query: 734 ALSLSGTVLGYYPVKV 781
           AL+ SG VLG  P++V
Sbjct: 326 ALNCSGVVLGSLPIRV 341


>ref|XP_002893742.1| hypothetical protein ARALYDRAFT_473465 [Arabidopsis lyrata subsp.
           lyrata] gi|297339584|gb|EFH70001.1| hypothetical protein
           ARALYDRAFT_473465 [Arabidopsis lyrata subsp. lyrata]
          Length = 409

 Score =  194 bits (492), Expect = 2e-47
 Identities = 111/213 (52%), Positives = 144/213 (67%), Gaps = 12/213 (5%)
 Frame = +2

Query: 179 NNNHRVEMLTDHHHRLNGDDG--------VLKMNGVKGLDS--REMSELEEMFSKLNPMA 328
           N++ R++ +  H     GD G        V + +GV G +S  R+M EL+E+FSKLNPMA
Sbjct: 44  NHHSRIDQVLRHDQ---GDVGLYSKIGSHVARSDGVDGGESFKRDMRELQELFSKLNPMA 100

Query: 329 QEFVPPSLFQNIHI--LNNVSAAYFAANSTPFMPMPFGPISPINGVLNGNGATGQRRKNV 502
           +EFVPPSL +      LN V+  +F +  + F    F      NG         +R+K+ 
Sbjct: 101 EEFVPPSLTKQGGNGGLNGVNGGFFTSAGSFFRNNGFSGTG--NGGYGNENGGFRRKKSF 158

Query: 503 NQWKRRTVGGRSTIAQREDVVRRTVYVSDIDHSVTEEMLAGLFLHCGQVVDCRICGDPHS 682
            Q KRR +  R+++AQREDV+RRTVYVSD+D  VTEE LAGLF+ CGQVVDCRICGDP+S
Sbjct: 159 GQGKRR-MNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNS 217

Query: 683 VLRFAFVEFTDEEGALAALSLSGTVLGYYPVKV 781
           VLRFAF+EFTDEEGA+ AL+LSGT+LG+YPVKV
Sbjct: 218 VLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKV 250



 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +2

Query: 557 DVVRRTVYVSDIDHSVTEEMLAGLF-LHCGQVVDCRICGDPHSVLRFAFVEFTDEEGALA 733
           ++  RT+Y ++ID  VT+  +   F   CG+V   R+ GD     R AFVEF   E A+A
Sbjct: 273 EMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIA 332

Query: 734 ALSLSGTVLGYYPVK 778
           AL+ SG VLG  P++
Sbjct: 333 ALNCSGVVLGSLPIR 347


>ref|XP_003602357.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
           gi|355491405|gb|AES72608.1| Splicing factor,
           arginine/serine-rich [Medicago truncatula]
          Length = 384

 Score =  191 bits (485), Expect = 2e-46
 Identities = 120/272 (44%), Positives = 154/272 (56%), Gaps = 25/272 (9%)
 Frame = +2

Query: 41  MAVVE--GHVLEQPSDQAQNNRTRMVESNGTHTKSA---------GTNAMNHFQVNGNNN 187
           MAV E  G  +   S    NN    V S+ T  + +           +  NH   NGN +
Sbjct: 1   MAVAENVGAKIGSSSQNLDNNNNHAVSSDSTEVEKSKPRTDQDVNNNSVFNHQHQNGNYS 60

Query: 188 HRVEML--------TDHHHRLNGDDGVLK--MNGVKGLDS--REMSELEEMFSKLNPMAQ 331
            +   +         +H   +N D  V+    NG  G +S  REM +LEE+ SKLNPMA+
Sbjct: 61  FKTHQMGQMHANGVQNHQFVVNNDGYVMNGLRNGENGGESFKREMRDLEELLSKLNPMAE 120

Query: 332 EFVPPSLFQNIHILNNVSAAYFAANSTPFMPMPFGPISPINGVLNGNGATGQRRKN--VN 505
           EFVPPSL  N   L    AA F   +   +         +N   N NG T +RRKN    
Sbjct: 121 EFVPPSLTNNHGYLAAGPAAGFGYPNNFIL---------LNNYANANGQTNRRRKNGYTT 171

Query: 506 QWKRRTVGGRSTIAQREDVVRRTVYVSDIDHSVTEEMLAGLFLHCGQVVDCRICGDPHSV 685
             KRR    +  + +RE+++RRTVYVSDID  VTEE LA LFL+CGQVVDCR+CGDP+S+
Sbjct: 172 NGKRRA-NHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSI 230

Query: 686 LRFAFVEFTDEEGALAALSLSGTVLGYYPVKV 781
           LRFAF+EFTDEE A AA+SLSGT+LGYYP++V
Sbjct: 231 LRFAFIEFTDEESARAAVSLSGTMLGYYPLRV 262