BLASTX nr result
ID: Lithospermum22_contig00012917
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00012917
(924 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001234106.1| U1 small nuclear ribonucleoprotein C-like [S... 67 1e-16
ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putati... 47 1e-08
ref|XP_003520224.1| PREDICTED: uncharacterized protein LOC100795... 43 4e-07
ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|2... 50 2e-06
ref|XP_003536302.1| PREDICTED: uncharacterized protein LOC100790... 40 5e-06
>ref|NP_001234106.1| U1 small nuclear ribonucleoprotein C-like [Solanum lycopersicum]
gi|62751087|dbj|BAD95791.1| similar to u1 small nuclear
ribonucleoprotein C [Solanum lycopersicum]
Length = 197
Score = 67.0 bits (162), Expect(2) = 1e-16
Identities = 32/75 (42%), Positives = 41/75 (54%)
Frame = +2
Query: 269 PPMPQMVGPPGAPVPGQMNGLQRPEGAXXXXXXXXXXXXXXXXXXXXXQMFPPPMYSGNV 448
PPMPQM+ PPGAP+PGQ+N +QRP G PPP+Y G+
Sbjct: 119 PPMPQMLAPPGAPMPGQVNNMQRPAG---PPSAVPGSMGMPAPTGGPPMFAPPPVYQGST 175
Query: 449 AAPSTGGNDSSTMNA 493
P+TGG D+S+ NA
Sbjct: 176 TVPTTGGVDNSSTNA 190
Score = 45.8 bits (107), Expect(2) = 1e-16
Identities = 28/60 (46%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 3 SLIDQKVKEHLST----GLRXXXXXXXXXXXXXXXHAPMQFPGGAQLPPGMQLLPGMRPP 170
SLIDQKVKEHL GL PMQ PG Q+P G Q +PGMRPP
Sbjct: 48 SLIDQKVKEHLGAFRPVGLPFPQLRPGLPGLPTP---PMQMPGNPQMPAGAQWVPGMRPP 104
>ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putative [Ricinus communis]
gi|223540083|gb|EEF41660.1| U1 small nuclear
ribonucleoprotein C, putative [Ricinus communis]
Length = 206
Score = 47.0 bits (110), Expect(2) = 1e-08
Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 266 APPMPQMVGPPGAP-VPGQMNGLQRPEGAXXXXXXXXXXXXXXXXXXXXXQMFPPPMYSG 442
+P MP MV PPGAP +PGQ+NGL RP M PP Y
Sbjct: 126 SPAMPPMVAPPGAPSLPGQVNGLPRP--PMSIPPATVPGSAAVAPPSGAPSMVPPASYQT 183
Query: 443 NVAAPSTGGNDSSTMNAVNGQGSEASH 523
N A P++ G DS N EA+H
Sbjct: 184 NPAPPTSAGFDSFN----NTPNLEANH 206
Score = 38.9 bits (89), Expect(2) = 1e-08
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Frame = +3
Query: 3 SLIDQKVKEHLS-------TGLRXXXXXXXXXXXXXXXHAPMQFPGGAQLPPGMQLLPGM 161
SLIDQ++KEHL G M PG AQLP L+PG+
Sbjct: 48 SLIDQRIKEHLGQAAAFQQVGAAYNQHLLQRPRLPVLPTPMMPIPGSAQLPANTPLMPGI 107
Query: 162 RPP 170
RPP
Sbjct: 108 RPP 110
>ref|XP_003520224.1| PREDICTED: uncharacterized protein LOC100795821 [Glycine max]
Length = 206
Score = 42.7 bits (99), Expect(2) = 4e-07
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 266 APPMPQMVGPPGAP-VPGQMNGLQRPEGAXXXXXXXXXXXXXXXXXXXXXQMFPPPMYSG 442
AP MP M+ PPGAP PGQ+N + RP + PPP G
Sbjct: 125 APTMPPMLPPPGAPQAPGQLNTIPRP-----------------------PSLAPPPAVPG 161
Query: 443 NVAAPSTGGNDSSTMNAV 496
+ AAP++ G S +A+
Sbjct: 162 STAAPASNGAPSMVSSAM 179
Score = 38.1 bits (87), Expect(2) = 4e-07
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +3
Query: 3 SLIDQKVKEHLS-------TGLRXXXXXXXXXXXXXXXHAP-MQFPGGAQLPPGMQLLPG 158
SLIDQ++KEHL G+ P + PG AQ+P L+PG
Sbjct: 48 SLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGSQPLMPG 107
Query: 159 MRPP 170
MRPP
Sbjct: 108 MRPP 111
>ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|222841602|gb|EEE79149.1|
predicted protein [Populus trichocarpa]
Length = 202
Score = 50.4 bits (119), Expect(2) = 2e-06
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 269 PPMPQMVGPPGAP-VPGQMNGLQRPEGAXXXXXXXXXXXXXXXXXXXXXQMFPPPMYSGN 445
P MP M+ PPGAP +PGQMNG+ RP M PP Y N
Sbjct: 122 PMMPPMMAPPGAPSLPGQMNGIPRP--PTMIAQPNVPGSTAAPTPSGPPSMGPPVTYQAN 179
Query: 446 VAAPSTGGNDSSTMNAVNGQGSEASH 523
AA ++GG DS +NA EA+H
Sbjct: 180 QAATTSGGFDSFNVNAA---APEANH 202
Score = 27.7 bits (60), Expect(2) = 2e-06
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Frame = +3
Query: 3 SLIDQKVKEHL-------STGLRXXXXXXXXXXXXXXXHAPMQFPGGAQLPPGMQLLPGM 161
S+IDQ++KEHL G P+ GG P L PGM
Sbjct: 48 SIIDQRIKEHLGQTAAFQQVGAAYNQHLMVQRPRLPVLPTPVMPIGGNNAP----LFPGM 103
Query: 162 RPP 170
RPP
Sbjct: 104 RPP 106
>ref|XP_003536302.1| PREDICTED: uncharacterized protein LOC100790892 [Glycine max]
Length = 206
Score = 39.7 bits (91), Expect(2) = 5e-06
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +2
Query: 266 APPMPQMVGPPGAP-VPGQMNGLQRPEGAXXXXXXXXXXXXXXXXXXXXXQMFPPPMYSG 442
A MP M+ PPGAP VPGQ+N + RP M MY
Sbjct: 125 AHTMPPMLPPPGAPQVPGQLNTIPRPPS--LAPPPTVPGSTATPASNGAPSMVSSAMYQA 182
Query: 443 NVAAPSTGGNDSSTMNAVNGQGSEASH 523
N APS+G D+ +A Q E +H
Sbjct: 183 NPPAPSSGSYDNYNTSA---QAPEGNH 206
Score = 37.4 bits (85), Expect(2) = 5e-06
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +3
Query: 3 SLIDQKVKEHLS-------TGLRXXXXXXXXXXXXXXXHAP-MQFPGGAQLPPGMQLLPG 158
SLIDQ++KEHL G+ P + PG AQ+P G L+ G
Sbjct: 48 SLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGGQPLMQG 107
Query: 159 MRPP 170
MRPP
Sbjct: 108 MRPP 111