BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00012235
         (1862 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   132   4e-38
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                130   9e-37
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   124   8e-36
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...   125   2e-35
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   120   4e-35

>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  132 bits (331), Expect(2) = 4e-38
 Identities = 102/307 (33%), Positives = 141/307 (45%), Gaps = 33/307 (10%)
 Frame = +2

Query: 911  SRGRGRGFAQPTQRFTRSGSNFQAWPNYSGSTPRFQA----CQLCQSNDHIAPQC-PRFV 1075
            SRGRGRG       F     +F    NYSG+T    +    CQ+C    H A  C  RF 
Sbjct: 245  SRGRGRGRGPSRGGF----QSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFD 300

Query: 1076 NVEVHLITTTSIHRFQRSPSNIWYPDTGATYHVTPDLAALQSFDEYACT----------- 1222
               V    + +    Q   +  WY DTGAT H+T DL  L   D+Y  T           
Sbjct: 301  ENYVPDQRSANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGM 360

Query: 1223 ---LVTEQV*P--NRVFHLTDILHVPEMTKSLLSVQKFCRDNNAIFEFSDSGFLIKDKPT 1387
                +   + P  +R  HL  +LHVP   K+L+SV +   DN+   EF  S FLIKD+ T
Sbjct: 361  TISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQT 420

Query: 1388 QRIILTGLASNGHYSFQPAA--------YSASASSKVWHHRLGHPHSRVLQQVISRHRLG 1543
            + ++L G   +G Y   P           S     + WH RLGHP   ++ +VIS + L 
Sbjct: 421  KAVLLHGKCRDGLYPLPPHPDLRLKHNFSSTRVPLEHWHKRLGHPSRDIVHRVISNNNLP 480

Query: 1544 VFSKFD----CFSCPLGKACRQSFSASPNKSSRVLNLIFTDVWGRAPKLSFDGMRFYVLF 1711
              S       C +C   KA +  ++ S ++SS  L LIF+DV+G A   SF   ++YV F
Sbjct: 481  CLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPAID-SFGRYKYYVSF 539

Query: 1712 VVDFRCF 1732
            + D+  F
Sbjct: 540  IDDYSKF 546



 Score = 54.7 bits (130), Expect(2) = 4e-38
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +3

Query: 1737 WLFPIASKSDVYSTFIHFQKLVERQFSTKIKSVQSDWGGEF 1859
            W++ +  KSDVY +F  FQ LVER F  KI + QSDWGGE+
Sbjct: 548  WIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEY 588


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score =  130 bits (328), Expect(2) = 9e-37
 Identities = 96/304 (31%), Positives = 142/304 (46%), Gaps = 32/304 (10%)
 Frame = +2

Query: 917  GRGRGFAQPTQRFTRSG-SNFQAWPNYSGSTPRFQACQLCQSNDHIAPQC-PRFVN--VE 1084
            GRGRG  +        G  N Q   +Y         CQ+C    H+A  C  RF    V 
Sbjct: 378  GRGRGATRGRGAAPGRGRGNNQQQRSYDNRP----LCQVCYKRGHVAADCWHRFDEDFVP 433

Query: 1085 VHLITTTSIHRFQRSPSNIWYPDTGATYHVTPDLAALQSFDEY----------ACTLVTE 1234
               +   +IH   R  +  WY DTGAT H+T +L  L + D Y             +  +
Sbjct: 434  DDKLVAAAIHTHARDSN--WYVDTGATDHITSELEKLTARDVYKGHDQIHTASGSGMEIK 491

Query: 1235 QV------*PNRVFHLTDILHVPEMTKSLLSVQKFCRDNNAIFEFSDSGFLIKDKPTQRI 1396
             +       P R  HL ++LHVP+  K+L+S  K   DN+   E     FLIKD+ T+R 
Sbjct: 492  HIGHSIVHTPTRPLHLNNVLHVPQANKNLISAHKLAADNSVFLEIHSKHFLIKDQATRRT 551

Query: 1397 ILTGLASNGHYSFQPAAYSASA--------SSKVWHHRLGHPHSRVLQQVISRHRLGVFS 1552
            +L G    G Y    A+  +SA        S + WH RLGH  + ++ +VIS+++L    
Sbjct: 552  VLKGRRQKGLYPVPSASPPSSAKVVCAVTPSFERWHSRLGHSSAPIISRVISKNKLPCLD 611

Query: 1553 KFD----CFSCPLGKACRQSFSASPNKSSRVLNLIFTDVWGRAPKLSFDGMRFYVLFVVD 1720
            + +    C +C   K+ +  +S S + SS  L L+F+DVWG AP +S    ++YV F+ D
Sbjct: 612  ESNKESVCDACLKAKSHQLPYSKSLSISSHPLELVFSDVWGPAP-VSVGNKKYYVSFIDD 670

Query: 1721 FRCF 1732
            +  F
Sbjct: 671  YSKF 674



 Score = 51.2 bits (121), Expect(2) = 9e-37
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +3

Query: 1737 WLFPIASKSDVYSTFIHFQKLVERQFSTKIKSVQSDWGGEFR 1862
            W++ + +KS+V+  F  FQ LVER F  KI S+Q+DWGGE++
Sbjct: 676  WIYLLKNKSEVFQKFHDFQNLVERLFDRKIISMQTDWGGEYQ 717



 Score = 63.9 bits (154), Expect = 1e-07
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
 Frame = +1

Query: 394 ISLKLTDHNHSFWKK*IVPFSKGQNLYHHVDGSIPPP-------------SPTSSDFAAW 534
           ++ KL+  NH  W   ++   +G  L  H++G  P P               ++ ++  W
Sbjct: 156 VTEKLSKANHGLWVAQVLTAIRGARLEGHINGKNPAPPAEITKTVDGKEVKTSNPNYDEW 215

Query: 535 YQRDQCVLSMIISSLTEEVMLIPMSHDSAWDFWLALERTLASDYLTRSLQLHAALHDLKQ 714
           +  DQ +L  + SSLT E +L   +  +A + W  L+    S    RSL +  AL  L++
Sbjct: 216 FAADQQILGFLFSSLTRETLLQVAAVKTAAEAWKTLDDMFTSRTRARSLNVRLALTTLQK 275

Query: 715 NDLSVSAYLSKDKVLYTDMEAS 780
            + S+S Y+ K K L  ++ A+
Sbjct: 276 GNSSISEYIGKMKTLADEVAAA 297


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  124 bits (310), Expect(2) = 8e-36
 Identities = 93/337 (27%), Positives = 140/337 (41%), Gaps = 73/337 (21%)
 Frame = +2

Query: 923  GRGFAQPTQRFTRSGSNFQAWPNYSGSTPRFQACQLCQSNDHIAPQC------------- 1063
            G G       FT+ G       ++ G+      CQLC    H+  QC             
Sbjct: 255  GNGMQHFRGNFTQQGRGRHGRGSWKGNNK--PQCQLCGRIGHVVMQCYYRFDQSFTGPSQ 312

Query: 1064 ---PRFVNVEVHLITTTSIHRFQRSPS-----------NIWYPDTGATYHVTPDLAALQS 1201
                R      HL    S   F  +PS           N WYPD+GAT+H+TP+L  L +
Sbjct: 313  LQGNRPQGNMAHLHQQLSEXFFPGTPSVKPTTAEIIQDNNWYPDSGATHHLTPNLNNLLT 372

Query: 1202 FDEYAC-------------------TLVTEQV*PNRVFHLTDILHVPEMTKSLLSVQKFC 1324
              ++                     T  +    P++   L  +LHVPE+TK+LLSV KF 
Sbjct: 373  KSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPSKTLALKQLLHVPEITKNLLSVSKFA 432

Query: 1325 RDNNAIFEFSDSGFLIKDKPTQRIILTGLASNGHYSF----------------------- 1435
             DN+  FEF  +   +KD  T+ +++ G    G Y F                       
Sbjct: 433  ADNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGGLYVFDNTQLKLPLHNSSCFASTALPSK 492

Query: 1436 QPAAYSASASS-KVWHHRLGHPHSRVLQQVISRHRLGVFSKFD---CFSCPLGKACRQSF 1603
            +P   ++  S   +WH+RLGHP S ++  V+++  L   +K     C  C +GK  + SF
Sbjct: 493  EPTVPASPTSPFTLWHNRLGHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSF 552

Query: 1604 SASPNKSSRVLNLIFTDVWGRAPKLSFDGMRFYVLFV 1714
              S +  ++ L LI TD+WG A   S  G ++Y+ F+
Sbjct: 553  LHSTSSYTKPLELIHTDLWGPASTPSSHGHQYYIHFI 589



 Score = 55.1 bits (131), Expect(2) = 8e-36
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
 Frame = +3

Query: 1695 GFMFYLLLILGAS--IWLFPIASKSDVYSTFIHFQKLVERQFSTKIKSVQSDWGGEFR 1862
            G  +Y+  I   S   W++ +  KS+ +  F+HF+  VE Q   KIK+VQSDWGGE+R
Sbjct: 581  GHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIKAVQSDWGGEYR 638



 Score = 61.2 bits (147), Expect = 9e-07
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
 Frame = +1

Query: 394 ISLKLTDHNHSFWKK*IVPFSKGQNLYHHV-DGSIPPPSPTSSD----------FAAWYQ 540
           +S KL +HN    +K I+   +G  L H + + S+ P    SSD          F  W Q
Sbjct: 19  VSSKLDNHNFLVXRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQDWEQ 78

Query: 541 RDQCVLSMIISSLTEEVMLIPMSHDSAWDFWLALERTLASDYLTRSLQLHAALHDLKQND 720
           + Q ++S +++S+T+ ++   ++ D++   W  LE   A+    +  Q    LH+ K+ D
Sbjct: 79  QXQLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGD 138

Query: 721 LSVSAYLSKDKVLYTDMEASYGYR 792
           LS+S YL K + +  D+ A  G++
Sbjct: 139 LSISDYLLKIRNV-VDLLALVGHK 161


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score =  125 bits (315), Expect(2) = 2e-35
 Identities = 92/305 (30%), Positives = 139/305 (45%), Gaps = 36/305 (11%)
 Frame = +2

Query: 908  NSRGRGRGFAQPTQRFTRSGSNFQAWPNYSGSTPRFQA-----CQLCQSNDHIAPQC--- 1063
            ++RGRG    +    F+  G  FQ    +S S+    A     CQ+C    H A QC   
Sbjct: 228  SNRGRGGRNNRGKGNFSTRGRGFQQ--QFSSSSSSVSASEKPMCQICGKRGHYALQCWHR 285

Query: 1064 --PRFVNVEVHLITTTSIHRFQRSPSNIWYPDTGATYHVTPDLAALQSFDEYAC--TLVT 1231
                + + E      +++H    S  + W PD+ AT H+T + + LQ    Y    T++ 
Sbjct: 286  FDDSYQHSEAAAAAFSALHITDVSDDSGWVPDSAATAHITNNSSRLQQMQPYLGNDTVMA 345

Query: 1232 EQV*PNRVFH--------------LTDILHVPEMTKSLLSVQKFCRDNNAIFEFSDSGFL 1369
                   + H              L D+L  P + KSLLSV K  +D    F F   G L
Sbjct: 346  SDGNFLPITHIGSANLPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVL 405

Query: 1370 IKDKPTQRIILTGLA-SNGHYSFQPAAYS-------ASASSKVWHHRLGHPHSRVLQQVI 1525
            +KDK T +++  G + S G Y  +   +          A+ +VWH RLGHP+ +VLQ + 
Sbjct: 406  VKDKATCKVLTKGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLLA 465

Query: 1526 SRHRLGVFSKFD--CFSCPLGKACRQSFSASPNKSSRVLNLIFTDVWGRAPKLSFDGMRF 1699
            ++  + +       C SC LGK+ R  F AS   +SR L  +  D+WG AP  S  G ++
Sbjct: 466  NKKAIQINKSTSKMCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQY 525

Query: 1700 YVLFV 1714
            YV+F+
Sbjct: 526  YVIFI 530



 Score = 51.6 bits (122), Expect(2) = 2e-35
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 1695 GFMFYLLLILGAS--IWLFPIASKSDVYSTFIHFQKLVERQFSTKIKSVQSDWGGEF 1859
            GF +Y++ I   S   W +P+  KSD  S F+ FQ  VE    TKI + QSD GGEF
Sbjct: 522  GFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGGGEF 578


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  120 bits (301), Expect(2) = 4e-35
 Identities = 86/266 (32%), Positives = 123/266 (46%), Gaps = 29/266 (10%)
 Frame = +2

Query: 1022 CQLCQSNDHIAPQC-PRFVNVEVHLITTTSIHRFQRSPSNIWYPDTGATYHVTPDLAALQ 1198
            CQ+C    H+A  C  R+ +  V          +       WY DTGAT H+T  L  L 
Sbjct: 272  CQVCHKRGHVASDCWHRYDDSYVPDEKLGGAATYAYGVDTNWYVDTGATDHITGQLDKLT 331

Query: 1199 SFDEYACTLVTEQV*-------------------PNRVFHLTDILHVPEMTKSLLSVQKF 1321
            + + Y  T   +Q+                    P+   HL ++LHVPE  K+L+SV K 
Sbjct: 332  TKERYKGT---DQIHTASGEGTSIKHVGHAIVPTPSHPLHLKNVLHVPEAAKNLVSVHKL 388

Query: 1322 CRDNNAIFEFSDSGFLIKDKPTQRIILTGLASNGHY-----SFQPAAYSASASSKVWHHR 1486
              DN A  E     FLIKDK T+R IL G    G Y     S    A+ A+ S   WH R
Sbjct: 389  VADNYAFLEIHGKYFLIKDKATRRTILEGPCRRGLYPLPARSSLRQAFVATPSFVRWHGR 448

Query: 1487 LGHPHSRVLQQVISRHRLGVFS----KFDCFSCPLGKACRQSFSASPNKSSRVLNLIFTD 1654
            LGHP   ++ +++S+++L   S    +  C +C   K  +  F  S + S+  L LI +D
Sbjct: 449  LGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSD 508

Query: 1655 VWGRAPKLSFDGMRFYVLFVVDFRCF 1732
            VWG A + S    ++YV F+ D+  F
Sbjct: 509  VWGPASE-SVGAKKYYVSFIDDYSKF 533



 Score = 56.2 bits (134), Expect(2) = 4e-35
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +3

Query: 1734 IWLFPIASKSDVYSTFIHFQKLVERQFSTKIKSVQSDWGGEF 1859
            +W++ +  KS+V+  F  FQKLVERQF  KI S+Q+DWGGE+
Sbjct: 534  VWIYFLKHKSEVFQKFHEFQKLVERQFDRKILSMQTDWGGEY 575