BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00011893
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311400.1| predicted protein [Populus trichocarpa] gi|2...   203   1e-50
ref|XP_002519191.1| pentatricopeptide repeat-containing protein,...   194   9e-48
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat...   187   1e-45
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar...   176   2e-42
ref|XP_002885175.1| pentatricopeptide repeat-containing protein ...   176   3e-42

>ref|XP_002311400.1| predicted protein [Populus trichocarpa] gi|222851220|gb|EEE88767.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score =  203 bits (517), Expect = 1e-50
 Identities = 93/189 (49%), Positives = 137/189 (72%)
 Frame = -2

Query: 575 NEATFRSLANGVFRCFPPHEALQVLTRWIEREPVFPKIASDIVLHCLADNNLPKEVAFFL 396
           NEAT RSL +GVFRC  P EA +++  +IE+EPV  ++A D +L CL++  +P+E    L
Sbjct: 158 NEATIRSLVHGVFRCVAPREAFELVIDFIEKEPVLGRLACDTLLCCLSEKCMPREAGALL 217

Query: 395 TKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQGMRVGFDTYLALTEALYQS 216
            K  +RGY PD++TF I ++C++KGL+++ TC I D F  +G ++GF  YLAL E LY++
Sbjct: 218 RKLGERGYLPDSSTFNITMTCLLKGLDVNETCGILDKFIARGAKLGFSFYLALIETLYKA 277

Query: 215 GREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERALETFEMMSQRGVSANLVTF 36
           GR  +G+ Y++Q+ +   V+ V S+N++IDCFCKAN++ +A+  F++M  RGVS NLVTF
Sbjct: 278 GRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTF 337

Query: 35  NTLISGLCK 9
           NTLISG CK
Sbjct: 338 NTLISGHCK 346


>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 719

 Score =  194 bits (493), Expect = 9e-48
 Identities = 88/189 (46%), Positives = 130/189 (68%)
 Frame = -2

Query: 575 NEATFRSLANGVFRCFPPHEALQVLTRWIEREPVFPKIASDIVLHCLADNNLPKEVAFFL 396
           +EAT RS  +GVFRC  P++A ++   +IEREPV  ++A D +L CL+  N+ +E    L
Sbjct: 321 SEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALL 380

Query: 395 TKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQGMRVGFDTYLALTEALYQS 216
            KF   G+ PD+ TF I ++C+IKG +++  C I D F +QGM+ GF TYLAL +ALY +
Sbjct: 381 KKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMA 440

Query: 215 GREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERALETFEMMSQRGVSANLVTF 36
           G+  +GN+Y +Q+ +   + +V S+N+VIDCFCK +M+++A  TF+ M  +G+  NLVTF
Sbjct: 441 GKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTF 500

Query: 35  NTLISGLCK 9
           NTLI G CK
Sbjct: 501 NTLIDGYCK 509


>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  187 bits (474), Expect = 1e-45
 Identities = 81/190 (42%), Positives = 129/190 (67%)
 Frame = -2

Query: 575 NEATFRSLANGVFRCFPPHEALQVLTRWIEREPVFPKIASDIVLHCLADNNLPKEVAFFL 396
           NEAT RSL +GVFRC  P +A ++L  ++ER+    ++  D +L+CL++N++  E   FL
Sbjct: 333 NEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFL 392

Query: 395 TKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQGMRVGFDTYLALTEALYQS 216
            K    GY P ++TF I ++C++K L++ VTC +FD+  + G++ GF TYL L EALY++
Sbjct: 393 IKTGKEGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKA 452

Query: 215 GREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERALETFEMMSQRGVSANLVTF 36
           G+   GN YMD++     +++++S+N+VIDC CK   ++RA E F  +  RG+S N+VT+
Sbjct: 453 GKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTY 512

Query: 35  NTLISGLCKS 6
           NTLI G C++
Sbjct: 513 NTLIGGFCRN 522



 Score = 59.3 bits (142), Expect = 4e-07
 Identities = 31/130 (23%), Positives = 60/130 (46%)
 Frame = -2

Query: 401 FLTKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQGMRVGFDTYLALTEALY 222
           ++ +  + G   +  ++ ++I C+ KG  +D   ++F     +G+     TY  L     
Sbjct: 461 YMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFC 520

Query: 221 QSGREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERALETFEMMSQRGVSANLV 42
           ++G   K    ++ +    F   + +FN +ID  C+A+  E A   F  M +  V  N++
Sbjct: 521 RNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVI 580

Query: 41  TFNTLISGLC 12
           T+N LI   C
Sbjct: 581 TYNILICSFC 590


>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g16890, mitochondrial; AltName: Full=Protein
           PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
           gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
           [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 659

 Score =  176 bits (446), Expect = 2e-42
 Identities = 82/186 (44%), Positives = 124/186 (66%)
 Frame = -2

Query: 575 NEATFRSLANGVFRCFPPHEALQVLTRWIEREPVFPKIASDIVLHCLADNNLPKEVAFFL 396
           NEAT R+  +G+FRC PP +A +VL  ++E++    ++  D VL+CL++N++ KE   FL
Sbjct: 284 NEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFL 343

Query: 395 TKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQGMRVGFDTYLALTEALYQS 216
            K  +RGY PD++TF   +SC++KG ++  TC+IFD F  +G++ GF+ YL L +AL  +
Sbjct: 344 RKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNA 403

Query: 215 GREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERALETFEMMSQRGVSANLVTF 36
            R ++G+ Y+ Q+     ++SV+S+N VIDC CKA  IE A      M  RG+S NLVTF
Sbjct: 404 QRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTF 463

Query: 35  NTLISG 18
           NT +SG
Sbjct: 464 NTFLSG 469



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 34/137 (24%), Positives = 63/137 (45%)
 Frame = -2

Query: 416 KEVAFFLTKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQGMRVGFDTYLAL 237
           K+V   L K    G+ PD  TF+++I+C+ +  EI      F    + G+     TY  L
Sbjct: 477 KKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNIL 536

Query: 236 TEALYQSGREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERALETFEMMSQRGV 57
             +   +G   +      ++        ++++N  I  FCK   +++A E  + M + G+
Sbjct: 537 IRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGL 596

Query: 56  SANLVTFNTLISGLCKS 6
             +  T++TLI  L +S
Sbjct: 597 KPDNFTYSTLIKALSES 613


>ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331015|gb|EFH61434.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 653

 Score =  176 bits (445), Expect = 3e-42
 Identities = 82/186 (44%), Positives = 122/186 (65%)
 Frame = -2

Query: 575 NEATFRSLANGVFRCFPPHEALQVLTRWIEREPVFPKIASDIVLHCLADNNLPKEVAFFL 396
           NEAT R+L +G+FRC PP EA +VL  ++E+  +  ++A D VL+CL++N++ KE A FL
Sbjct: 278 NEATIRTLVHGIFRCLPPCEAFEVLLGFMEKNSILQRVAYDTVLYCLSNNSMAKETALFL 337

Query: 395 TKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQGMRVGFDTYLALTEALYQS 216
            K  +RGY PD++TF   ++C++KG  +  TC IFD F  +G + GF+ YL L +AL  +
Sbjct: 338 RKTGERGYIPDSSTFNAAMNCLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQALLNA 397

Query: 215 GREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERALETFEMMSQRGVSANLVTF 36
            R + G+ Y+ Q+     ++SV+++N VIDC CKA   E A      M  RG+S NL+TF
Sbjct: 398 QRFSAGDRYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITF 457

Query: 35  NTLISG 18
           NT +SG
Sbjct: 458 NTFLSG 463



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/137 (24%), Positives = 65/137 (47%)
 Frame = -2

Query: 416 KEVAFFLTKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQGMRVGFDTYLAL 237
           K+V   + K  + G  PD  TF+++I+C+ +  EI      F    + G++    TY  L
Sbjct: 471 KKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNIL 530

Query: 236 TEALYQSGREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERALETFEMMSQRGV 57
             +   +G   +       +       +++++N +I  FCK   +++A E  + M + G+
Sbjct: 531 IRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGL 590

Query: 56  SANLVTFNTLISGLCKS 6
             +  T++TLI  L +S
Sbjct: 591 KPDNFTYSTLIKALSES 607



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/149 (22%), Positives = 63/149 (42%)
 Frame = -2

Query: 449 VLHCLADNNLPKEVAFFLTKFKDRGYFPDNTTFTILISCMIKGLEIDVTCQIFDSFTKQG 270
           V+ CL      +  A FLT+ +DRG  P+  TF   +S    G ++     + +   + G
Sbjct: 425 VIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHG 484

Query: 269 MRVGFDTYLALTEALYQSGREAKGNYYMDQIFRYDFVTSVHSFNIVIDCFCKANMIERAL 90
                 T+  +   L ++           ++  +    +  ++NI+I   C      R++
Sbjct: 485 CNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSV 544

Query: 89  ETFEMMSQRGVSANLVTFNTLISGLCKSR 3
           + F  M + G+S NL  +N +I   CK +
Sbjct: 545 KLFANMKESGLSPNLYAYNAIIQSFCKMK 573