BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00011579
         (1477 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   481   e-133
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   454   e-125
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   431   e-118
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   430   e-118
ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul...   421   e-115

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  481 bits (1239), Expect = e-133
 Identities = 248/428 (57%), Positives = 314/428 (73%), Gaps = 20/428 (4%)
 Frame = -2

Query: 1413 KEEGWYRLPEFRLSIDGASVGKAIA------NSNNITTNPS--AIKWVFRCCPELPTSLV 1258
            K+  W+ LP F   +D +S+GK ++      N+ N T   S  A+KWV RCCP+LP SLV
Sbjct: 52   KKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLV 111

Query: 1257 HKLFRLRQVRKQSCHFHLDN-------PKLNRVAAKDSLEVGDRIFLPISVQKILPLEPK 1099
             KLFRLRQVR++S +    +        +L RVAAKD + +GD+I LPI+V++  P E  
Sbjct: 112  QKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEF-PSEKH 170

Query: 1098 VLVFNDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSP 919
                NDEE+ F+ +L LYKD A+IV+NKPPGLPVQGGIGIK+S+D LA  YL+Y+  + P
Sbjct: 171  EYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPP 230

Query: 918  RLVHRLDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGS 739
            RLVHRLDRD SG+L+MGRTQ +A+ LHSIFREKT   SN DI+ KK+I+Q++YWALVIGS
Sbjct: 231  RLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGS 290

Query: 738  PRRDKGLISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCP 559
            PRR +GLISAPLGKV+V DGKSE I I DN+++  +Q+A+TEYRVI SS HG+TWLEL P
Sbjct: 291  PRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSP 350

Query: 558  LTGRKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHL--SCIARSVSQQDKSPKPVIDPF 385
            LTGRKHQLRVHCAE LGTPIVGD+KYGWQAHR  + L  S I +++ +   + K    PF
Sbjct: 351  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRK--THPF 408

Query: 384  DLDLESGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDC---SFEELKFEAPLPSHMQ 214
             LDLESGS+ DKQ  LHLHCK+MVLPN+   LQ+ ++  +C     E L+F APLPSHMQ
Sbjct: 409  GLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQ 468

Query: 213  QSWDIFHS 190
            +SWDI +S
Sbjct: 469  RSWDILNS 476


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  454 bits (1168), Expect = e-125
 Identities = 233/413 (56%), Positives = 304/413 (73%), Gaps = 9/413 (2%)
 Frame = -2

Query: 1401 WYRLPEFRLSIDGASVGKAIANSNNI--TTNPSAIKWVFRCCPELPTSLVHKLFRLRQVR 1228
            ++ LP +  +I G+++GKA++ +     +T  +A+KWV RCCPELP +LV KLFRLRQV+
Sbjct: 128  FFTLPPYTSTISGSALGKALSATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQVK 187

Query: 1227 KQSCHF---HLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFNDEEMKFIRS 1057
            ++  +     +++ K  RVAAKD + VGDRIFLPISVQ  LP E +     ++E  FIR 
Sbjct: 188  RELLNVGDGEMEH-KTKRVAAKDLMNVGDRIFLPISVQA-LPFEKQKCHCGEKEANFIRG 245

Query: 1056 LLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSGVL 877
            L LYKD A+IV+NKPPG+PVQGGIGIK S D LA   L Y+Y + PRLVHRLDRD SG+L
Sbjct: 246  LELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGIL 305

Query: 876  VMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPLGK 697
            VMGRTQ +   LHS+FREKT A SN DI  +++I+Q+KYWALVIGSPRR KG+ISAPLGK
Sbjct: 306  VMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGK 365

Query: 696  VIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHCAE 517
            V+V DGKS+ I + +N ES+  Q+AVT+YRV+ SS HG+ WLEL P+TGRKHQLRVHCAE
Sbjct: 366  VVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELSPITGRKHQLRVHCAE 424

Query: 516  FLGTPIVGDFKYGWQAHRNLEHLSC-IARSVSQQDKSPKPVIDPFDLDLESGSLSDKQWR 340
             LGTPIVGD+KYGWQ HR  + L       +S ++   K ++ PF +DLESGS+S+K  R
Sbjct: 425  VLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKIL-PFGIDLESGSISEKHPR 483

Query: 339  LHLHCKEMVLPNIHATLQHAKMITDCSFEELK---FEAPLPSHMQQSWDIFHS 190
            LHLHCK+MVLP++   L+  +  ++  F +LK    +APLPS+MQ+SWDI +S
Sbjct: 484  LHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSWDILNS 536


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  431 bits (1108), Expect = e-118
 Identities = 226/426 (53%), Positives = 298/426 (69%), Gaps = 18/426 (4%)
 Frame = -2

Query: 1416 KKEEG---WYRLPEFRLSIDGASVGKAIANSNN------ITTNPSAIKWVFRCCPELPTS 1264
            K E+G   W+ LP +  +++G+ +G  I N          T   +A+KWV RCCPELP S
Sbjct: 52   KNEKGSNRWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPRS 111

Query: 1263 LVHKLFRLRQVRK-----QSCHFHLD-NPKLNRVAAKDSLEVGDRIFLPISVQKILPLEP 1102
            LV KLFRLR+VR+     ++  ++L+   +L RVAAKD L VGD+IFLP+SVQ +   E 
Sbjct: 112  LVQKLFRLRKVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMSVQ-VFSTEK 170

Query: 1101 KVLVFNDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDS 922
                 N EE  F+ SL+L+KD A++VINKPPGLPVQGGIG+K+S+D LA   L Y Y + 
Sbjct: 171  TRDYCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEP 230

Query: 921  PRLVHRLDRDCSGVLVMGRTQLTASALHSIFREKTSALSN--GDINHKKQIIQKKYWALV 748
            PRLVHRLDRD SG+L+MGRT  + S LHS+FREKT   S     ++ +K+I+ K+YWALV
Sbjct: 231  PRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALV 290

Query: 747  IGSPRRDKGLISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLE 568
            IGSPRR KGLI+APLGK+++ DG+SE I + DN E    Q A+T+Y+VI  S+HG+TWLE
Sbjct: 291  IGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLE 349

Query: 567  LCPLTGRKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDP 388
            LCPLTGRKHQLRVHCAE LGTPIVGD+KYGWQAH+N +       S   +++  K  + P
Sbjct: 350  LCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFC----SNFHKNQGKKQFL-P 404

Query: 387  FDLDLESGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCS-FEELKFEAPLPSHMQQ 211
            F LD ESGS+++   RLHLHCK++ LP++   L +  +  DCS  E L+ +APLPS+MQ+
Sbjct: 405  FGLDFESGSIAENSPRLHLHCKQLTLPDVSFALHNDSLDRDCSRLECLELDAPLPSYMQK 464

Query: 210  SWDIFH 193
            SWDI +
Sbjct: 465  SWDIIN 470


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  430 bits (1105), Expect = e-118
 Identities = 226/422 (53%), Positives = 295/422 (69%), Gaps = 13/422 (3%)
 Frame = -2

Query: 1416 KKEEG---WYRLPEFRLSIDGASVGKAIANSNN------ITTNPSAIKWVFRCCPELPTS 1264
            K E+G   W+ LP +  +++G+ +G  I N          T   +A+KWV RCCPELP S
Sbjct: 52   KNEKGSNRWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPRS 111

Query: 1263 LVHKLFRLRQVRKQ-SCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVF 1087
            LV KLFRLR+V +Q +      + +L RVAAKD L VGD+IFLP+SVQ +   E      
Sbjct: 112  LVQKLFRLRKVPRQLNVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQ-VFSTEKTRDYC 170

Query: 1086 NDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVH 907
            N EE  F+ SL+L+KD A++VINKPPGLPVQGGIG+K+S+D LA   L Y Y + PRLVH
Sbjct: 171  NKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVH 230

Query: 906  RLDRDCSGVLVMGRTQLTASALHSIFREKTSALSN--GDINHKKQIIQKKYWALVIGSPR 733
            RLDRD SG+L+MGRT  + S LHS+FREKT   S     ++ +K+I+ K+YWALVIGSPR
Sbjct: 231  RLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPR 290

Query: 732  RDKGLISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLT 553
            R KGLI+APLGK+++ DG+SE I + DN E    Q A+T+Y+VI  S+HG+TWLELCPLT
Sbjct: 291  RSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLELCPLT 349

Query: 552  GRKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDL 373
            GRKHQLRVHCAE LGTPIVGD+KYGWQAH+N +       S   +++  K  + PF LD 
Sbjct: 350  GRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFC----SNFHKNQGKKQFL-PFGLDF 404

Query: 372  ESGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCS-FEELKFEAPLPSHMQQSWDIF 196
            ESGS+++   RLHLHCK++ LP++   L +  +  DCS  E L+ +APLPS+MQ+SWDI 
Sbjct: 405  ESGSIAENNPRLHLHCKQLTLPDVSFALHNDSLDRDCSRLECLELDAPLPSYMQKSWDII 464

Query: 195  HS 190
            +S
Sbjct: 465  NS 466


>ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501934|gb|AES83137.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 430

 Score =  421 bits (1083), Expect = e-115
 Identities = 219/423 (51%), Positives = 291/423 (68%), Gaps = 12/423 (2%)
 Frame = -2

Query: 1422 SGKKEEG-WYRLPEFRLSIDGASVGKAIANSNNITTNPSAIKWVFRCCPELPTSLVHKLF 1246
            S   E+G W  LP    ++          N+++ +T+  A+KWV RCCPELP +L+HKLF
Sbjct: 21   SAVAEDGKWLTLPPVSTTV----------NTSSSSTSTPALKWVIRCCPELPKTLIHKLF 70

Query: 1245 RLRQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEP------KVLVFN 1084
            RL+QVR        D+ K  RV  KD+L  GDRIFLP SV++ +PL P        L   
Sbjct: 71   RLKQVRMLPRQ--QDDNKFKRVTPKDTLNSGDRIFLPNSVKQQIPLTPTPPKHESPLTLT 128

Query: 1083 DEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHR 904
             +++ FIRSL++YKD  ++V+NKPPG+PVQGGI IK S+D +A + L Y+Y   PRLVHR
Sbjct: 129  AKQINFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHR 188

Query: 903  LDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDK 724
            LDRDCSG+LVMGRT+ + + LHSIFREKTS  SN + + +K I+Q++YWALV+G PRR  
Sbjct: 189  LDRDCSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPRRSG 248

Query: 723  GLISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRK 544
            G+++APLGKV+V +GKS+ I I DN     +Q+AVTEYRVI SS+HGFTWLEL PLTGRK
Sbjct: 249  GVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRK 308

Query: 543  HQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESG 364
            HQLRVHCAE LGTPIVGD+KYG QAH+            S ++   +  + PF L+L  G
Sbjct: 309  HQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSNLEDSTEEHLKEEAL-PFGLNLNKG 367

Query: 363  SLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCSF-----EELKFEAPLPSHMQQSWDI 199
            S+SDK  RLHLHCK++VLPNI   LQ+ + ++D S+     E L+ EA LP +M++SW++
Sbjct: 368  SISDKHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLSAVESLELEADLPPYMKKSWEV 427

Query: 198  FHS 190
             +S
Sbjct: 428  TNS 430