BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00011203
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containi...    63   3e-08
ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containi...    63   3e-08
ref|XP_003609866.1| Pentatricopeptide repeat-containing protein ...    62   6e-08
ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containi...    61   1e-07
ref|XP_002519315.1| pentatricopeptide repeat-containing protein,...    60   2e-07

>ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
           gi|449522692|ref|XP_004168360.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
          Length = 496

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
 Frame = -2

Query: 276 SFPHPTKSNPIPLSNNNNKIPQSNSKLKVSKKGQFPTLSVKETSNFSNQTGNKKIPIKNM 97
           +F  PT+ +P+P +++      S +K +  K+G+FP     ETS  + +    K   K +
Sbjct: 47  AFAAPTRKSPVPSTSS------SPAKKRHWKQGEFP--GTTETS--TRRRAPLKRVKKKL 96

Query: 96  VRKN--EVWVNTVTEALSDCIDNKEWLQALEVFE 1
            RKN  + W NTVTEALSD I NK WLQALEVFE
Sbjct: 97  DRKNNAKAWANTVTEALSDHITNKRWLQALEVFE 130


>ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
 Frame = -2

Query: 294 MASFSLSFPHPTKSNPIPLSNNNNKIPQSNS--------------KLKVSKKGQFPTLSV 157
           MAS SLSF      + IP   +N      N               K +  KKG+FP  S 
Sbjct: 1   MASISLSFCSSIVPSRIPHDKSNKTHSHHNPTFPLIRFGISAPAVKKRHWKKGEFPATS- 59

Query: 156 KETSNFSNQTGNKKIPIKNMVRKNE------VWVNTVTEALSDCIDNKEWLQALEVFE 1
               +F N T  +K P+KN+ +K +       WVNTVTE+LS+ I NK WLQAL+VF+
Sbjct: 60  --QPSFPNDT-RRKTPLKNLKKKFDKKNDAKAWVNTVTESLSERIHNKHWLQALQVFD 114


>ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355510921|gb|AES92063.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 496

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 52/131 (39%), Positives = 67/131 (51%), Gaps = 31/131 (23%)
 Frame = -2

Query: 300 MAMASFSLSFPHPT-KSNPIPLSN----NNNKIPQ-----------------SNS---KL 196
           M MAS SL+F   +   +PIP  N    NN + P                  SNS   K 
Sbjct: 1   MDMASVSLTFSSSSIVPSPIPQHNKTTHNNPRKPHLPIFYAVSSSPSKTASASNSSVVKK 60

Query: 195 KVSKKGQFPTLSVKETSNFSNQTGNKKIPIKNMVRKNE------VWVNTVTEALSDCIDN 34
           K  K+G+FP   V ETS  S+    ++ PIKN+ +K +       W NTVTEALS+CID 
Sbjct: 61  KHWKQGEFP--GVSETSLPSS---TRRKPIKNVKKKLDRKNNAKAWANTVTEALSECIDK 115

Query: 33  KEWLQALEVFE 1
           K+WLQALE  +
Sbjct: 116 KQWLQALETLD 126


>ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
 Frame = -2

Query: 294 MASFSLSFPHPTKSNPIPLSNNNNK--------------IPQSNSKLKVSKKGQFPTLSV 157
           MAS SLSF      + IP   +N                I     K +  KKG+FP  S 
Sbjct: 1   MASMSLSFCSCIVPSRIPHDKSNKTHSHHQPTFPLIRFGISAPAVKKRHWKKGEFPATS- 59

Query: 156 KETSNFSNQTGNKKIPIKNMVRKNE------VWVNTVTEALSDCIDNKEWLQALEVFE 1
               +F N T  +K P+KN+ +K +       WVNTVTE+LS+ I NK WLQAL+VF+
Sbjct: 60  --QPSFPNDT-RRKTPLKNLKKKFDKKNDAKAWVNTVTESLSERIHNKHWLQALQVFD 114


>ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541630|gb|EEF43179.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 45/121 (37%), Positives = 60/121 (49%), Gaps = 24/121 (19%)
 Frame = -2

Query: 291 ASFSLSFPHPTKSNPIPLSNNN-NKIPQSNS-----------------KLKVSKKGQFPT 166
           +S SLSF      + +  SNNN N  P+S+                  K K  K+G+FP 
Sbjct: 6   SSLSLSFSSSILPSTLAQSNNNCNTKPRSHQPKHTLVLCAYAPTSTSPKKKHWKQGEFP- 64

Query: 165 LSVKETSNFSNQTGNKKIPIKNMVRKNE------VWVNTVTEALSDCIDNKEWLQALEVF 4
                   F+  +  ++ PIKN+ +K +       WVNTVTEALSD I  K+W QALEVF
Sbjct: 65  -------GFTETSPPRRTPIKNIKKKLDRKNKAKAWVNTVTEALSDRILKKQWFQALEVF 117

Query: 3   E 1
           E
Sbjct: 118 E 118