BLASTX nr result
ID: Lithospermum22_contig00010485
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00010485
(2257 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc... 715 0.0
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera] 658 0.0
ref|NP_175971.3| transcription initiation factor TFIIH subunit H... 590 e-166
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab... 587 e-165
ref|XP_002310512.1| predicted protein [Populus trichocarpa] gi|2... 585 e-164
>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
protein product [Vitis vinifera]
Length = 602
Score = 715 bits (1845), Expect = 0.0
Identities = 363/572 (63%), Positives = 448/572 (78%), Gaps = 6/572 (1%)
Frame = -1
Query: 1888 ERFVFMPNDPKSSAKLNVEFRLIKGHKFSKEGS-KLALLNLTGDQ---GNYIFEFENFPD 1721
++FVFMPNDP SSA+ +VEFR IKGHKFSK GS K ALLNLT D G YIFEFEN+PD
Sbjct: 29 DKFVFMPNDPTSSARFDVEFRFIKGHKFSKGGSNKPALLNLTQDSEKGGGYIFEFENYPD 88
Query: 1720 RDACREFVAMALVRSGETPKASSEKSHASLQNEQLNTAEMDRRIKLLQENSELQKLHKQF 1541
R+ CREFV AL + E KA SE+S L +EQL+T EM+RRIKLL+E+SELQKLHKQF
Sbjct: 89 REVCREFVGRALAKFSEASKAGSEQSAVKLFDEQLSTIEMERRIKLLREDSELQKLHKQF 148
Query: 1540 VIGGILSEAEFWATRKKLLYQKGSKPPKQPVALRNDLLIT-KPSSDGQSNKVTFNLTPEI 1364
V+ G+L+EAEFWATRKKLL S+ KQ V ++ ++ KP +DG++N+VTFNLTPEI
Sbjct: 149 VLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEI 208
Query: 1363 IHQIFAEKPAVRQAYLSFVPNKMTDLVFWTKYSKAEYLHSTRNVVXXXXXXXXXXXXAVF 1184
IHQIFAEKPAV QA+L+FVPNKMT+ FW KY +AEYLH TRN V AVF
Sbjct: 209 IHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVF 268
Query: 1183 LKQDDLLAHEARRKIRRVDPTLDMEADEGDDYTHLSGHGLSNSDGKDFLEPQYEPFRRSL 1004
LK DD+LA+EARRKIRRVDPTLDMEAD+GDDY HL HG+ K+ ++PQYE +RR+L
Sbjct: 269 LKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTL 328
Query: 1003 SQNLNQHSAVVLQGRTIEGALVDARSVAEALTRTKQDELANEAADDNVNKEKLARVNRMA 824
SQ+LN+H+AVVL+GR I+ L D R+VAEAL ++K+ E ANE +D +V +E+L R++RM
Sbjct: 329 SQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMT 388
Query: 823 EIEDLQAPREPPVAPLCIKDPRDYFESQQANALKALGDSVVG-KKLKYKVSTNEAYAALR 647
EIEDLQAPR+ P A LCIKDPRDYF+SQQANALK LGD++ G K++K +ST EAY +LR
Sbjct: 389 EIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLR 448
Query: 646 DSIMDIKARGFSEAVVSPEVAMKIFSSLTRTISNTKYNTGKNQQDSVFDMLPSRTKEELI 467
I +IK+ G S+ +V P++A+K+ + LT+ IS+TK++ GKN Q+SV D LP TKEEL+
Sbjct: 449 GFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELL 508
Query: 466 HHSTSIQELLKHFWSSYPITTKYLYAKVTKLKDAMSGIYPKLQELKDSAPSEVRHQVSLL 287
HH TSIQELL+HFWSSYPITT YLY K ++LKDAMS IYPKLQE+K+S S+ RHQVSLL
Sbjct: 509 HHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLL 568
Query: 286 VQPMLQSLDAAIAHYDDDMLKRSAKGGEKLNG 191
VQPMLQ+LDAA AHYD D KRSA+ GE+ NG
Sbjct: 569 VQPMLQALDAAFAHYDADQQKRSARSGERPNG 600
>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
Length = 735
Score = 658 bits (1697), Expect = 0.0
Identities = 345/589 (58%), Positives = 427/589 (72%), Gaps = 49/589 (8%)
Frame = -1
Query: 1888 ERFVFMPNDPKSSAKLNVEFRLIKGHKFSKEGS-KLALLNLTGDQ---GNYIFEFENFPD 1721
++FVFMPNDP SSA+ +VEFR IKGHKFSK GS K ALLNLT D G YIFEFEN+PD
Sbjct: 29 DKFVFMPNDPTSSARFDVEFRFIKGHKFSKGGSNKPALLNLTQDSEKGGGYIFEFENYPD 88
Query: 1720 RDACREFVAMALVRSGETPKASSEKSHASLQNEQLNTAEMDRRIKLLQEN---------- 1571
R+ CREFV AL + E KA SE+S L +EQL+T EM+RRIKLL+E+
Sbjct: 89 REVCREFVGKALAKFSEASKAGSEQSAVKLFDEQLSTIEMERRIKLLREDRHSVPEEKFG 148
Query: 1570 ---------------------------------SELQKLHKQFVIGGILSEAEFWATRKK 1490
SELQKLHKQFV+ G+L+EAEFWATRKK
Sbjct: 149 VLLLKGILPLFGETIIAMKLIDSGIASKVKWDCSELQKLHKQFVLSGVLTEAEFWATRKK 208
Query: 1489 LLYQKGSKPPKQPVALRNDLLIT-KPSSDGQSNKVTFNLTPEIIHQIFAEKPAVRQAYLS 1313
LL S+ KQ V ++ ++ KP +DG++N+VTFNLTPEIIHQIFAEKPAV QA+L+
Sbjct: 209 LLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLN 268
Query: 1312 FVPNKMTDLVFWTKYSKAEYLHSTRNVVXXXXXXXXXXXXAVFLKQDDLLAHEARRKIRR 1133
FVPNKMT+ FW KY +AEYLH TRN V AVFLK DD+LA EARRKIRR
Sbjct: 269 FVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILASEARRKIRR 328
Query: 1132 VDPTLDMEADEGDDYTHLSGHGLSNSDGKDFLEPQYEPFRRSLSQNLNQHSAVVLQGRTI 953
VDPTLDMEAD+GDDY HL HG+ K+ ++PQYE +RR+LSQ+LN+H+AVVL+GR I
Sbjct: 329 VDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPI 388
Query: 952 EGALVDARSVAEALTRTKQDELANEAADDNVNKEKLARVNRMAEIEDLQAPREPPVAPLC 773
+ L D R+VAEAL ++K+ E ANE +D +V +E+L R++RM EIEDLQAPR+ P A LC
Sbjct: 389 DVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALC 448
Query: 772 IKDPRDYFESQQANALKALGDSVVG-KKLKYKVSTNEAYAALRDSIMDIKARGFSEAVVS 596
IKDPRDYF+SQQANALK LGD++ G K++K +S+ EAY +LR I +IK+ G S+ +V
Sbjct: 449 IKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEAYGSLRGFISEIKSVGLSDPIVK 508
Query: 595 PEVAMKIFSSLTRTISNTKYNTGKNQQDSVFDMLPSRTKEELIHHSTSIQELLKHFWSSY 416
P++A+K+ + LT+ IS+TK++ GKN Q+SV D LP TKEEL+HH TSIQELL+HFWSSY
Sbjct: 509 PDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSY 568
Query: 415 PITTKYLYAKVTKLKDAMSGIYPKLQELKDSAPSEVRHQVSLLVQPMLQ 269
PITT YLY K ++LKDAMS IYPKLQE+K+S S+ RHQVSLLVQPMLQ
Sbjct: 569 PITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQ 617
>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
Full=Probable RNA polymerase II transcription factor B
subunit 1-1; AltName: Full=General transcription and DNA
repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
hypothetical protein [Arabidopsis thaliana]
gi|332195172|gb|AEE33293.1| transcription initiation
factor TFIIH subunit H1 [Arabidopsis thaliana]
Length = 591
Score = 590 bits (1520), Expect = e-166
Identities = 313/566 (55%), Positives = 408/566 (72%), Gaps = 3/566 (0%)
Frame = -1
Query: 1879 VFMPNDPKSSAKLNVEFRLIKGHKFSKEGS-KLALLNLTGDQG-NYIFEFENFPDRDACR 1706
+F+PNDPKS +KL V + IK K++KEGS K LNLT Q ++IFEFEN+PD ACR
Sbjct: 33 LFVPNDPKSDSKLKVLTQNIKSQKYTKEGSNKPPWLNLTNKQAKSHIFEFENYPDMHACR 92
Query: 1705 EFVAMALVRSGETPKASSEKSHASLQNEQLNTAEMDRRIKLLQENSELQKLHKQFVIGGI 1526
+F+ AL + P KS S +EQL+ E++ R KLL+ENSELQ+LHKQFV +
Sbjct: 93 DFITKALAKCELEPN----KSVVSTSSEQLSIKELELRFKLLRENSELQRLHKQFVESKV 148
Query: 1525 LSEAEFWATRKKLLYQKGSKPPKQPVALRNDLLI-TKPSSDGQSNKVTFNLTPEIIHQIF 1349
L+E EFWATRKKLL + + KQ + L++ ++ KPS+DG++N+VTFNLTPEII QIF
Sbjct: 149 LTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQIF 208
Query: 1348 AEKPAVRQAYLSFVPNKMTDLVFWTKYSKAEYLHSTRNVVXXXXXXXXXXXXAVFLKQDD 1169
AEKPAVRQA++++VP+KMT+ FWTKY +AEYL+ST+N AVFLK D+
Sbjct: 209 AEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDE 268
Query: 1168 LLAHEARRKIRRVDPTLDMEADEGDDYTHLSGHGLSNSDGKDFLEPQYEPFRRSLSQNLN 989
+LA E R KIRRVDPTLDMEAD+GDDYTHL HG+ D +EPQ + F+RSL Q+LN
Sbjct: 269 ILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSLLQDLN 328
Query: 988 QHSAVVLQGRTIEGALVDARSVAEALTRTKQDELANEAADDNVNKEKLARVNRMAEIEDL 809
+H+AVVL+GR+I+ D R VAEALTR KQ A+ + N+E+L R++R+A +EDL
Sbjct: 329 RHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADGETTKDANQERLERMSRVAGMEDL 388
Query: 808 QAPREPPVAPLCIKDPRDYFESQQANALKALGDSVVGKKLKYKVSTNEAYAALRDSIMDI 629
QAP+ P+APL IKDPRDYFESQQ N L + K LK V +EAY L++SI++I
Sbjct: 389 QAPQNFPLAPLSIKDPRDYFESQQGNVLNVPRGA---KGLKRNV--HEAYGLLKESILEI 443
Query: 628 KARGFSEAVVSPEVAMKIFSSLTRTISNTKYNTGKNQQDSVFDMLPSRTKEELIHHSTSI 449
+A G S+ ++ PEV+ ++FSSLTRTI+ K GKN ++S D LP TK+E++HH TSI
Sbjct: 444 RATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVLHHWTSI 503
Query: 448 QELLKHFWSSYPITTKYLYAKVTKLKDAMSGIYPKLQELKDSAPSEVRHQVSLLVQPMLQ 269
QELLKHFWSSYPITT YL+ KV KLKDAMS Y KL+ +K+S S++RHQVSLLV+PM Q
Sbjct: 504 QELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQ 563
Query: 268 SLDAAIAHYDDDMLKRSAKGGEKLNG 191
+LDAA HY+ D+ +R+AK GE+ NG
Sbjct: 564 ALDAAFHHYEVDLQRRTAKSGERPNG 589
>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
Length = 592
Score = 587 bits (1512), Expect = e-165
Identities = 316/567 (55%), Positives = 408/567 (71%), Gaps = 4/567 (0%)
Frame = -1
Query: 1879 VFMPNDPKSSAKLNVEFRLIKGHKFSKEGS-KLALLNLTGDQG-NYIFEFENFPDRDACR 1706
+F+PNDPKS +KL V + IK K +KE S K LNLT G ++IFEFEN+PD ACR
Sbjct: 33 LFVPNDPKSDSKLKVLTQNIKSQKNTKEESNKPPWLNLTNKLGKSHIFEFENYPDMHACR 92
Query: 1705 EFVAMALVRSGETPKASSEKSHASLQNEQLNTAEMDRRIKLLQENSELQKLHKQFVIGGI 1526
+F+ AL + E P KS S +EQL+ E++ R KLL+ENSELQ+LHKQFV +
Sbjct: 93 DFITKALAKCEEEPN----KSVVSTSSEQLSIKELELRFKLLRENSELQRLHKQFVESKV 148
Query: 1525 LSEAEFWATRKKLLYQKGSKPPKQPVALRNDLLI-TKPSSDGQSNKVTFNLTPEIIHQIF 1349
L+E EFWATRKKLL + + KQ V L++ ++ KPS+DG++N+VTFNLTPEII QIF
Sbjct: 149 LTEDEFWATRKKLLGKDSIRKSKQQVGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQIF 208
Query: 1348 AEKPAVRQAYLSFVPNKMTDLVFWTKYSKAEYLHSTRNVVXXXXXXXXXXXXAVFLKQDD 1169
AEKPAVRQA++++VP+KMT+ FWTKY +AEYL+ST+N AVFLK D+
Sbjct: 209 AEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDE 268
Query: 1168 LLAHEARRKIRRVDPTLDMEADEGDDYTHLSGHGLSNSDGKDFLEPQYEPFRRSLSQNLN 989
+LA E R+KIRRVDPTLDMEAD+GDDYTHL HG+ D +EPQ + FRRSL Q+LN
Sbjct: 269 ILARETRQKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFRRSLLQDLN 328
Query: 988 QHSAVVLQGRTIEGALVDARSVAEALTRTKQDELANEAADDNVNKEKLARVNRMAEIEDL 809
+H+AVVL+GR+I+ D R VAEALTR KQ A+ + N E+L R++R+A +EDL
Sbjct: 329 RHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADGETTKDANLERLERMSRLAGMEDL 388
Query: 808 QAPREPPVAPLCIKDPRDYFESQQANALKALGDSVVGKKLKYKVSTNEAYAALRDSIMDI 629
QAP+ P+APL IKDPRDYFESQQ N L + K LK V +EAY L++SI++I
Sbjct: 389 QAPQNFPLAPLSIKDPRDYFESQQGNVLNVPRGA---KGLKRNV--HEAYGLLKESILEI 443
Query: 628 KARGFSEAVVSPEVAMKIFSSLTRTISNTKYNTGKNQQDSVFDMLPSRTKEELIHHSTSI 449
+A G S+ ++ PEV+ ++FSSLTRTIS K GKN ++S D LP TK+E++HH TSI
Sbjct: 444 RATGLSDPLIRPEVSFEVFSSLTRTISTAKNIIGKNPRESFLDRLPKSTKDEVLHHWTSI 503
Query: 448 QELLKHFWSSYPITTKYLYAKVTKLKDAMSGIYPKLQELKDSAPSEVRHQVSLLVQPMLQ 269
QELL+HFWSSYPITT YL+ KV KLKDAMS Y KL+ +K+S S++RHQVSLLV+PM Q
Sbjct: 504 QELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQ 563
Query: 268 SLDAAIAHYDDDMLKRSAK-GGEKLNG 191
+LDAA HY+ D+ +R+AK GGE+ NG
Sbjct: 564 ALDAAFQHYEADLQRRTAKSGGERPNG 590
>ref|XP_002310512.1| predicted protein [Populus trichocarpa] gi|222853415|gb|EEE90962.1|
predicted protein [Populus trichocarpa]
Length = 603
Score = 585 bits (1508), Expect = e-164
Identities = 315/575 (54%), Positives = 413/575 (71%), Gaps = 9/575 (1%)
Frame = -1
Query: 1888 ERFVFMPNDPKSSAKLNVEFRLIKGHKFSKEGS-KLALLNLTGDQG-NYIFEFENFPDRD 1715
ER +F PN P S+ KLN+EFR +K HK++KEGS K +LNLT QG +YIFEFE++ D
Sbjct: 30 ERLMFKPNSPNSATKLNMEFRFVKNHKYTKEGSNKAPMLNLTSSQGVSYIFEFESYDDLH 89
Query: 1714 ACREFVAMALVRSGETPKASSEKSHASLQNEQLNTAEMDRRIKLLQENSELQKLHKQFVI 1535
C+E V AL ++GETPK + + +EQ +T E+ R+ +LQENSELQ LHK+FV
Sbjct: 90 VCKECVGKALSKTGETPKPIDT---SEVPSEQPSTEELLLRMNMLQENSELQNLHKRFVS 146
Query: 1534 GGILSEAEFWATRKKLLYQKGSKPPKQPVALRNDLLI-TKPSSDGQSNKVTFNLTPEIIH 1358
GIL+EAEFWATRKKLL SK KQ L++ +L TKPS+DG++NKVTF LTPEI+
Sbjct: 147 DGILTEAEFWATRKKLLGGNFSKKSKQRTGLKSFVLSDTKPSTDGRTNKVTFTLTPEIVR 206
Query: 1357 QIFAEKPAVRQAYLSFVPNKMTDLVFWTKYSKAEYLHSTRNV---VXXXXXXXXXXXXAV 1187
++FAEKPAV +AYL VP KM++ FW+KY +AEYL +N A+
Sbjct: 207 EVFAEKPAVHRAYLDLVPKKMSERDFWSKYCRAEYLQHAKNANAAAAAAAEAAEDEELAL 266
Query: 1186 FLKQDDLLAHEARRKIRRVDPTLDMEADEGDDYTHLSGHGLSNSDGKDFLEPQYEPFRRS 1007
FLK DD+LA E RRKIR VDPTL+MEADEGDDYTHL HG+ K+ E Q+E + R+
Sbjct: 267 FLKPDDILASETRRKIRCVDPTLNMEADEGDDYTHLPDHGIVRDGSKEITESQHELYIRT 326
Query: 1006 LSQNLNQHSAVVLQGRTI-EGALVDARSVAEALTRTKQDELA-NEAADDNVNKEKLARVN 833
LSQ LN+H+AVVLQG I E L D ++VAEAL ++KQ + A NE N N+++L+R++
Sbjct: 327 LSQELNRHAAVVLQGTPIDEEQLKDTQTVAEALKQSKQGQNASNEETYMNANQDRLSRIS 386
Query: 832 RMAEIEDLQAPREPPVAPLCIKDPRDYFESQQANALKALGDSVVGKK-LKYKVSTNEAYA 656
+M EI+DLQA + P+APL IKDPRDYF+SQQA ALK D+ +G +K +S E+YA
Sbjct: 387 KMMEIDDLQASSDLPLAPLSIKDPRDYFDSQQATALKNSRDTSIGTDPVKRILSAEESYA 446
Query: 655 ALRDSIMDIKARGFSEAVVSPEVAMKIFSSLTRTISNTKYNTGKNQQDSVFDMLPSRTKE 476
+LRDSI IK G + ++ PEVA+K+ S LT IS+TKY+TGKN SV D LP+ KE
Sbjct: 447 SLRDSISLIKTTGLVDPIIKPEVAVKVLSVLTHNISSTKYDTGKNHGLSVLDTLPNTIKE 506
Query: 475 ELIHHSTSIQELLKHFWSSYPITTKYLYAKVTKLKDAMSGIYPKLQELKDSAPSEVRHQV 296
EL++H TS+QELLKH+WSSYPITT YLY KV++LKDAMS I +LQELK+S S++RHQV
Sbjct: 507 ELLYHWTSLQELLKHYWSSYPITTTYLYTKVSRLKDAMSKIDSQLQELKESVQSDLRHQV 566
Query: 295 SLLVQPMLQSLDAAIAHYDDDMLKRSAKGGEKLNG 191
+LL++PM Q+L+AA+ HYD ++ KRSA+ G++ NG
Sbjct: 567 TLLLRPMQQALEAAMQHYDAELQKRSARSGDRSNG 601