BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00010088
         (1305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   206   2e-56
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   206   4e-56
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   206   6e-56
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   206   6e-56
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...   195   1e-52

>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  206 bits (525), Expect(2) = 2e-56
 Identities = 115/320 (35%), Positives = 163/320 (50%), Gaps = 7/320 (2%)
 Frame = -1

Query: 1227 PNYPMQYF*LPKHVCNKINSILSNYWWGSLDKKENIHWAVWQKLCNTKANEGLGFRDLRL 1048
            P + M  F L K +C++I+ +++ YWW + +K   +HW  W KL   K   GLGFRD+ +
Sbjct: 1057 PTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYI 1116

Query: 1047 FILALLSKQVWRLITGPQ--CARVYKGKYFPQGSFWNAQVGLNPSFT*RSLLQVRDMLNK 874
            F LA+L+KQ WRLI  P   C+RV + KYFP G  +  +   N S+T RS+ +   +L  
Sbjct: 1117 FNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQN 1176

Query: 873  TVCWDIGDGQTINIWQHRWAPYTWSNKPYTPKPNRPHKTTISEFIDAYIGTWDITELQAH 694
             + W +GDG  INIW   W P  WS KP TP+      T + E ID Y GTWD   L   
Sbjct: 1177 GMIWRVGDGSKINIWADPWIPRGWSRKPMTPR-GANLVTKVEELIDPYTGTWDEDLLSQT 1235

Query: 693  FLSMDVQEILEIPLEYLNRPDLPLWKHHPRGIFTVSSTYHAFKD-----XXXXXXXXXXX 529
            F   DV  I  IP+ ++   D+  W    RG FTV S Y   ++                
Sbjct: 1236 FWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNW 1294

Query: 528  XXXTHIFYIRFWQIKVSTKIKHFLWRVINNNLPTSDNLIRRKVKVEPL*KLCHKKQETYM 349
                  F+ + W++ V  KIKHFLWR+ +N L    NL  R + V+    +C +  E   
Sbjct: 1295 ESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAG 1354

Query: 348  HVFNSCSFTRKVGRSLTISE 289
            H+F  C   +KV ++L + E
Sbjct: 1355 HLFFKCKPVKKVWQALNLEE 1374



 Score = 40.4 bits (93), Expect(2) = 2e-56
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = -2

Query: 1301 LERWKPRLLSKAGKEIFIKFVLQAIPTTLCSIF 1203
            ++ WK +LLS+AGKEI IK V QAIPT     F
Sbjct: 1032 IQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCF 1064


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  206 bits (523), Expect(2) = 4e-56
 Identities = 115/320 (35%), Positives = 163/320 (50%), Gaps = 7/320 (2%)
 Frame = -1

Query: 1227 PNYPMQYF*LPKHVCNKINSILSNYWWGSLDKKENIHWAVWQKLCNTKANEGLGFRDLRL 1048
            P + M  F L K +C++I+ +++ YWW + +K   +HW  W KL   K   GLGFRD+ +
Sbjct: 1030 PTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYI 1089

Query: 1047 FILALLSKQVWRLITGPQ--CARVYKGKYFPQGSFWNAQVGLNPSFT*RSLLQVRDMLNK 874
            F LA+L+KQ WRLI  P   C+RV + KYFP G  +  +   N S+T RS+ +   +L  
Sbjct: 1090 FNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQN 1149

Query: 873  TVCWDIGDGQTINIWQHRWAPYTWSNKPYTPKPNRPHKTTISEFIDAYIGTWDITELQAH 694
             + W +GDG  INIW   W P  WS KP TP+      T + E ID Y GTWD   L   
Sbjct: 1150 GMIWRMGDGSKINIWADPWIPRGWSRKPMTPR-GANLVTKVEELIDPYTGTWDEDLLSQT 1208

Query: 693  FLSMDVQEILEIPLEYLNRPDLPLWKHHPRGIFTVSSTYHAFKD-----XXXXXXXXXXX 529
            F   DV  I  IP+ ++   D+  W    RG FTV S Y   ++                
Sbjct: 1209 FWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNW 1267

Query: 528  XXXTHIFYIRFWQIKVSTKIKHFLWRVINNNLPTSDNLIRRKVKVEPL*KLCHKKQETYM 349
                  F+ + W++ V  KIKHFLWR+ +N L    NL  R + V+    +C +  E   
Sbjct: 1268 ESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAG 1327

Query: 348  HVFNSCSFTRKVGRSLTISE 289
            H+F  C   +KV ++L + E
Sbjct: 1328 HLFFKCKPVKKVWQALNLEE 1347



 Score = 40.4 bits (93), Expect(2) = 4e-56
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = -2

Query: 1301 LERWKPRLLSKAGKEIFIKFVLQAIPTTLCSIF 1203
            ++ WK +LLS+AGKEI IK V QAIPT     F
Sbjct: 1005 IQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCF 1037


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  206 bits (525), Expect(2) = 6e-56
 Identities = 115/320 (35%), Positives = 163/320 (50%), Gaps = 7/320 (2%)
 Frame = -1

Query: 1227 PNYPMQYF*LPKHVCNKINSILSNYWWGSLDKKENIHWAVWQKLCNTKANEGLGFRDLRL 1048
            P + M  F L K +C++I+ +++ YWW + +K   +HW  W KL   K   GLGFRD+ +
Sbjct: 1002 PTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYI 1061

Query: 1047 FILALLSKQVWRLITGPQ--CARVYKGKYFPQGSFWNAQVGLNPSFT*RSLLQVRDMLNK 874
            F LA+L+KQ WRLI  P   C+RV + KYFP G  +  +   N S+T RS+ +   +L  
Sbjct: 1062 FNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQN 1121

Query: 873  TVCWDIGDGQTINIWQHRWAPYTWSNKPYTPKPNRPHKTTISEFIDAYIGTWDITELQAH 694
             + W +GDG  INIW   W P  WS KP TP+      T + E ID Y GTWD   L   
Sbjct: 1122 GMIWRVGDGSKINIWADPWIPRGWSRKPMTPR-GANLVTKVEELIDPYTGTWDEDLLSQT 1180

Query: 693  FLSMDVQEILEIPLEYLNRPDLPLWKHHPRGIFTVSSTYHAFKD-----XXXXXXXXXXX 529
            F   DV  I  IP+ ++   D+  W    RG FTV S Y   ++                
Sbjct: 1181 FWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNW 1239

Query: 528  XXXTHIFYIRFWQIKVSTKIKHFLWRVINNNLPTSDNLIRRKVKVEPL*KLCHKKQETYM 349
                  F+ + W++ V  KIKHFLWR+ +N L    NL  R + V+    +C +  E   
Sbjct: 1240 ESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAG 1299

Query: 348  HVFNSCSFTRKVGRSLTISE 289
            H+F  C   +KV ++L + E
Sbjct: 1300 HLFFKCKPVKKVWQALNLEE 1319



 Score = 38.9 bits (89), Expect(2) = 6e-56
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2

Query: 1301 LERWKPRLLSKAGKEIFIKFVLQAIPTTLCSIF 1203
            ++ WK +LLS+AGKEI IK V Q IPT     F
Sbjct: 977  IQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCF 1009


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  206 bits (525), Expect(2) = 6e-56
 Identities = 115/320 (35%), Positives = 163/320 (50%), Gaps = 7/320 (2%)
 Frame = -1

Query: 1227 PNYPMQYF*LPKHVCNKINSILSNYWWGSLDKKENIHWAVWQKLCNTKANEGLGFRDLRL 1048
            P + M  F L K +C++I+ +++ YWW + +K   +HW  W KL   K   GLGFRD+ +
Sbjct: 998  PTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYI 1057

Query: 1047 FILALLSKQVWRLITGPQ--CARVYKGKYFPQGSFWNAQVGLNPSFT*RSLLQVRDMLNK 874
            F LA+L+KQ WRLI  P   C+RV + KYFP G  +  +   N S+T RS+ +   +L  
Sbjct: 1058 FNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQN 1117

Query: 873  TVCWDIGDGQTINIWQHRWAPYTWSNKPYTPKPNRPHKTTISEFIDAYIGTWDITELQAH 694
             + W +GDG  INIW   W P  WS KP TP+      T + E ID Y GTWD   L   
Sbjct: 1118 GMIWRVGDGSKINIWADPWIPRGWSRKPMTPR-GANLVTKVEELIDPYTGTWDEDLLSQT 1176

Query: 693  FLSMDVQEILEIPLEYLNRPDLPLWKHHPRGIFTVSSTYHAFKD-----XXXXXXXXXXX 529
            F   DV  I  IP+ ++   D+  W    RG FTV S Y   ++                
Sbjct: 1177 FWEEDVAAIKSIPV-HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNW 1235

Query: 528  XXXTHIFYIRFWQIKVSTKIKHFLWRVINNNLPTSDNLIRRKVKVEPL*KLCHKKQETYM 349
                  F+ + W++ V  KIKHFLWR+ +N L    NL  R + V+    +C +  E   
Sbjct: 1236 ESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAG 1295

Query: 348  HVFNSCSFTRKVGRSLTISE 289
            H+F  C   +KV ++L + E
Sbjct: 1296 HLFFKCKPVKKVWQALNLEE 1315



 Score = 38.9 bits (89), Expect(2) = 6e-56
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -2

Query: 1301 LERWKPRLLSKAGKEIFIKFVLQAIPTTLCSIF 1203
            ++ WK +LLS+AGKEI IK V Q IPT     F
Sbjct: 973  IQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCF 1005


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score =  195 bits (495), Expect(3) = 1e-52
 Identities = 110/342 (32%), Positives = 168/342 (49%), Gaps = 6/342 (1%)
 Frame = -1

Query: 1227 PNYPMQYF*LPKHVCNKINSILSNYWWGSLDKKENIHWAVWQKLCNTKANEGLGFRDLRL 1048
            P Y M  F LP+ VC  + S+  N+WWG+   K   HW  W+ L  +K+  GLGF+D+RL
Sbjct: 1198 PVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRL 1257

Query: 1047 FILALLSKQVWRLITGPQ--CARVYKGKYFPQGSFWNAQVGLNPSFT*RSLLQVRDMLNK 874
            F  ALL++Q WRLI  P   CARV K KY+P GS  +   G N S   +++    +++ K
Sbjct: 1258 FNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHGLELVKK 1317

Query: 873  TVCWDIGDGQTINIWQHRWAPYTWSNKPYTPKPNRPHKTTISEFIDAYIGTWDITELQAH 694
             + W IG+G+++ +WQ  W P   S +P TPK N   K      +D   G WD  ++   
Sbjct: 1318 GIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKNNCRIKWVADLMLDN--GMWDANKINQI 1375

Query: 693  FLSMDVQEILEIPLEYLNRPDLPLWKHHPRGIFTVSSTYHAFKDXXXXXXXXXXXXXXTH 514
            FL +DV+ IL++     +  D   W     G F+V + Y   ++                
Sbjct: 1376 FLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLAENWAKEEASSSSSDVNIR 1435

Query: 513  IFYIRFWQIKVSTKIKHFLWRVINNNLPTSDNLIRRKVKVEPL*KLCHKKQETYMHVFNS 334
              +   W+  V +K+K F WR  +N LPT DN  +R +++     +C  ++E  MH    
Sbjct: 1436 KAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHALCR 1495

Query: 333  CSFTRKVGRSLTISEDVRRPLDFRDL----LENRWNFLPPHK 220
            C   + +  ++  S D+   +D   L    L NR   LP H+
Sbjct: 1496 CPQAKHLWLAMKESNDLSLRMDDHLLGPSWLFNRLALLPDHE 1537



 Score = 33.9 bits (76), Expect(3) = 1e-52
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 1295 RWKPRLLSKAGKEIFIKFVLQAIPTTLCSIF 1203
            +W    LS  GKE+ IK V+QAIP  +  IF
Sbjct: 1175 QWGENYLSSGGKEVLIKAVIQAIPVYVMGIF 1205



 Score = 26.6 bits (57), Expect(3) = 1e-52
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 151  LPPHKLRIWLIGLWQV*FQQNKRINGEQS 65
            LP H+  ++L+ LW++ F  N+ I+G+ S
Sbjct: 1533 LPDHEQPMFLMVLWRIWFVHNEIIHGKPS 1561