BLASTX nr result
ID: Lithospermum22_contig00010031
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00010031
(588 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 200 1e-51
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 198 2e-51
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 194 2e-50
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 196 3e-50
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 198 4e-50
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 200 bits (508), Expect(2) = 1e-51
Identities = 91/185 (49%), Positives = 132/185 (71%), Gaps = 1/185 (0%)
Frame = -2
Query: 587 SNVAAIAAGSVCLSLPTGMVIKLNNVYNVPALSRNIISVSQHENDGYYFSINESCCFITR 408
+ VA +A G++ LSLP+G+V++LNN Y +PAL +N+IS S + +GY F ++ C +
Sbjct: 297 ARVAVVAVGTMSLSLPSGLVLELNNCYCIPALCKNVISASCLQAEGYGFRSVDNGCSVYY 356
Query: 407 NSIVYGTTSR*NDLYVLDTN-VETYNINNKRNKPNDLNPSYLWHCRLGHISDKRIKKLDT 231
N I Y N LY+++ + YNIN KR +PNDLNP+++WHCR GHI++K ++KL+
Sbjct: 357 NDIFYFNAPMMNGLYIVNLDGCSVYNINAKRQRPNDLNPTFIWHCRFGHINEKCMEKLNR 416
Query: 230 HGILTLSGFEPYDQCESCLLGKMTKSPLTGTSERATNLLGIIHIDVCGPMNTLARGGYSY 51
G+L GFE ++ CESCLLGKMTK+P TG SERA+ LLG++H D+CGPM++ A+GG+ Y
Sbjct: 417 DGLLHSFGFESFETCESCLLGKMTKAPFTGQSERASELLGLVHTDICGPMSSTAKGGFGY 476
Query: 50 FSLIT 36
F T
Sbjct: 477 FITFT 481
Score = 28.9 bits (63), Expect(2) = 1e-51
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -1
Query: 54 ILFTDNYSRYGYINLLKN 1
I FTD++SRYGY+ L+++
Sbjct: 478 ITFTDDFSRYGYVYLMRH 495
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 198 bits (503), Expect(2) = 2e-51
Identities = 91/166 (54%), Positives = 122/166 (73%)
Frame = -2
Query: 533 MVIKLNNVYNVPALSRNIISVSQHENDGYYFSINESCCFITRNSIVYGTTSR*NDLYVLD 354
MV++L N Y VPA+++NIISVS + +G++FSI CC R+ + YG+ N L+VL+
Sbjct: 1 MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLN 60
Query: 353 TNVETYNINNKRNKPNDLNPSYLWHCRLGHISDKRIKKLDTHGILTLSGFEPYDQCESCL 174
++ YNI K+ K NDLNP++LWHCRLGHI++K I+KL + G+L +E Y+ CESCL
Sbjct: 61 QSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCL 120
Query: 173 LGKMTKSPLTGTSERATNLLGIIHIDVCGPMNTLARGGYSYFSLIT 36
LGKMTK+P TG SERA++LLG+IH DVCGPM+T ARG Y YF T
Sbjct: 121 LGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFT 166
Score = 30.0 bits (66), Expect(2) = 2e-51
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -1
Query: 54 ILFTDNYSRYGYINLLKN 1
I FTD++SRYGY+ L+K+
Sbjct: 163 ITFTDDFSRYGYVYLMKH 180
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 194 bits (492), Expect(2) = 2e-50
Identities = 94/185 (50%), Positives = 130/185 (70%), Gaps = 1/185 (0%)
Frame = -2
Query: 587 SNVAAIAAGSVCLSLPTGMVIKLNNVYNVPALSRNIISVSQHENDGYYFSINESCCFITR 408
+ VAA++A ++ L LP+G +++LNN Y VPA+SRNIIS S +GY F I + C I
Sbjct: 426 AKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRNIISASCLMTEGYKFIIEDHGCSIFL 485
Query: 407 NSIVYGTTSR*NDLYVLDTN-VETYNINNKRNKPNDLNPSYLWHCRLGHISDKRIKKLDT 231
N + YG N L++L+ + +NIN KR +PN++N +++WHCRLGHIS+KR+KKL
Sbjct: 486 NDMFYGYAPVLNGLFILNLDDAPIFNINAKRLRPNNMNSTFIWHCRLGHISEKRMKKLHD 545
Query: 230 HGILTLSGFEPYDQCESCLLGKMTKSPLTGTSERATNLLGIIHIDVCGPMNTLARGGYSY 51
GIL E ++ CESC+LGKMTK+P TG +ERA++LL +IH DVCGPM+T ARGG+ Y
Sbjct: 546 DGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQY 605
Query: 50 FSLIT 36
F T
Sbjct: 606 FITFT 610
Score = 30.8 bits (68), Expect(2) = 2e-50
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -1
Query: 54 ILFTDNYSRYGYINLLKN 1
I FTD+YSRYGYI L+++
Sbjct: 607 ITFTDDYSRYGYIYLMRH 624
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 196 bits (499), Expect(2) = 3e-50
Identities = 92/185 (49%), Positives = 131/185 (70%), Gaps = 1/185 (0%)
Frame = -2
Query: 587 SNVAAIAAGSVCLSLPTGMVIKLNNVYNVPALSRNIISVSQHENDGYYFSINESCCFITR 408
+ VAA+A G++ LSLP+ +V++LNN Y +PAL +N+IS S + +GY F ++ C +
Sbjct: 314 ARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQAEGYGFRSVDNDCSVYY 373
Query: 407 NSIVYGTTSR*NDLYVLDTN-VETYNINNKRNKPNDLNPSYLWHCRLGHISDKRIKKLDT 231
N I Y + LY+++ N YNIN KR +PNDLNP+++WHCRLGHI++KR++K+
Sbjct: 374 NDIFYFHAPMMSGLYIVNLNGYSVYNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKIHR 433
Query: 230 HGILTLSGFEPYDQCESCLLGKMTKSPLTGTSERATNLLGIIHIDVCGPMNTLARGGYSY 51
G+L FE ++ CESCLLGKMTK+P TG SERA+ LL ++H DVCGPM++ ARGG+ Y
Sbjct: 434 DGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSSTARGGFGY 493
Query: 50 FSLIT 36
F T
Sbjct: 494 FFTFT 498
Score = 27.7 bits (60), Expect(2) = 3e-50
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = -1
Query: 48 FTDNYSRYGYINLLKN 1
FTD++SRYGY+ L+++
Sbjct: 497 FTDDFSRYGYVYLMRH 512
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 198 bits (504), Expect(2) = 4e-50
Identities = 92/183 (50%), Positives = 130/183 (71%), Gaps = 1/183 (0%)
Frame = -2
Query: 581 VAAIAAGSVCLSLPTGMVIKLNNVYNVPALSRNIISVSQHENDGYYFSINESCCFITRNS 402
VA +A G++ LSLP+G+V++LNN Y +PAL +N+IS S + +GY F ++ C + N
Sbjct: 432 VAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISASCLQAEGYGFRSMDNGCSVYYND 491
Query: 401 IVYGTTSR*NDLYVLDTN-VETYNINNKRNKPNDLNPSYLWHCRLGHISDKRIKKLDTHG 225
+ Y N LY+++ + YNIN KR PNDLNP+++WHCRLGHI++KR++KL G
Sbjct: 492 LFYFHAPMMNGLYIVNLDGCSVYNINAKRQHPNDLNPTFIWHCRLGHINEKRMEKLHRDG 551
Query: 224 ILTLSGFEPYDQCESCLLGKMTKSPLTGTSERATNLLGIIHIDVCGPMNTLARGGYSYFS 45
+L FE ++ CESCLLGKMTK+P TG S+RA+ LLG++H DVCGPM++ ARGG+ YF
Sbjct: 552 LLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLGLVHTDVCGPMSSTARGGFGYFI 611
Query: 44 LIT 36
T
Sbjct: 612 TFT 614
Score = 25.4 bits (54), Expect(2) = 4e-50
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 54 ILFTDNYSRYGYINLLKN 1
I FTD++SR GY+ L+++
Sbjct: 611 ITFTDDFSRCGYVYLMRH 628