BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00009889
         (1109 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   126   8e-27
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...   123   9e-26
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   121   4e-25
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   118   2e-24
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   114   4e-23

>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 489

 Score =  126 bits (317), Expect = 8e-27
 Identities = 96/337 (28%), Positives = 159/337 (47%), Gaps = 27/337 (8%)
 Frame = -1

Query: 971  YHPNCRDIKLTNVCFTDDLCILSAANDRSLKTVKETLQYFGQITWLKPNLKKSFVYLAGN 792
            YHP C+ + LT++ F DDL +LS    RS++ + E  + F + + L+ +++KS VY AG 
Sbjct: 71   YHPRCKQMGLTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRISMEKSTVYFAG- 129

Query: 791  VDEACLSNTL--EILNT------SLPIKYLCIPLNTKELNARDCRPLVDKIKQKANSCGA 636
                 LS+T   E++        +LP++YL +PL TK+L++ D  PL++ IK+K  S  A
Sbjct: 130  -----LSHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLIEHIKKKIGSWSA 184

Query: 635  SN*AMLAS*PC*RLLC*EFTIFRIKLCFSLSLWSKRLMVY*RTFYGMKNVRKREVQK*-- 462
               +                  R+ L  S+ LWS  +  +    + +     RE+ K   
Sbjct: 185  RFLSYAG---------------RLNLISSV-LWS--ICNFWMGAFRLPRECIREIDKMCS 226

Query: 461  ----AGRK*MLQRRKVDWI------------LRT*GDWNNAFMAKHLWNICVGKDTLWIR 330
                +G      + K+ W             LR+  + N+    K +W I    D+LW++
Sbjct: 227  AYLWSGGDLNTSKAKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVK 286

Query: 329  WLHS*RLKGVSIWEI*KR-SIGTNPWSKLLSLRSIMRHLVVNKVGNGKHTSFLFDQWHPM 153
            W+H+  LK VS W + +  S+G+  W K+L  R     L   +V NG HT F +D W  M
Sbjct: 287  WIHATLLKQVSFWAVRENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDM 346

Query: 152  GILDHVLSQRNIQSLRIQKSDSIGDVINKSKWPRRRL 42
            G L  +   R +  + I+K  ++ D     +  R R+
Sbjct: 347  GRLIDIAGDRGVIDMGIKKHATMADAWGNRRRRRHRM 383


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  123 bits (308), Expect = 9e-26
 Identities = 102/336 (30%), Positives = 159/336 (47%), Gaps = 27/336 (8%)
 Frame = -1

Query: 971 YHPNCRDIKLTNVCFTDDLCILSAANDRSLKTVKETLQYFGQITWLKPNLKKSFVYLAGN 792
           YHP C+ I LT++ F DDL +LS    RS++ + +    F + + LK +++KS VYLAG 
Sbjct: 19  YHPRCKQIGLTHLSFADDLMVLSDGKVRSIEGIVDVFDTFAKCSDLKISMEKSTVYLAG- 77

Query: 791 VDEACLSNTL--EILNT------SLPIKYLCIPLNTKELNARDCRPLVDKIKQKANSCGA 636
                LS+T   E+++       +LP++YL +PL TK+ ++ D  PL+D IKQK  S  A
Sbjct: 78  -----LSHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSSTDYLPLIDHIKQKICSWSA 132

Query: 635 SN*AMLAS*PC*RLLC*EFTIFRIKLCFSLSLWSKRLMVY*RTFYGMKNVRKREVQK--- 465
                       R L   +T  R+ L  S+ LWS  +  +    + +     RE+ K   
Sbjct: 133 ------------RFL--SYT-GRLNLISSI-LWS--ICNFWMGAFRLPRDCIREIDKMCS 174

Query: 464 ---*AGRK*MLQRRKVDWI------------LRT*GDWNNAFMAKHLWNICVGKDTLWIR 330
               +G +    + K+ W             LR+  + N+    K +W I    D+LW++
Sbjct: 175 AYLWSGGELNTSKAKIAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVK 234

Query: 329 WLHS*RLKGVSIWEI*KR-SIGTNPWSKLLSLRSIMRHLVVNKVGNGKHTSFLFDQWHPM 153
           W+ S  LK V  W + +  S+G+  W K+L  R I R L   ++ NG  TSF +D W  +
Sbjct: 235 WIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDL 294

Query: 152 GILDHVLSQRNIQSLRIQKSDSIGDVINKSKWPRRR 45
           G L      R    L I K  ++ +      W  RR
Sbjct: 295 GRLIESAGDRGAIDLGINKHATVVEA-----WGNRR 325


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  121 bits (303), Expect = 4e-25
 Identities = 89/327 (27%), Positives = 152/327 (46%), Gaps = 17/327 (5%)
 Frame = -1

Query: 974  SYHPNCRDIKLTNVCFTDDLCILSAANDRSLKTVKETLQYFGQITWLKPNLKKSFVYLAG 795
            SYHP CR++ LT++CF DD+ + S    +S++      + F  ++WLK +L+KS +++AG
Sbjct: 835  SYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAG 894

Query: 794  ---NVDEACLSNTLEILNTSLPIKYLCIPLNTKELNARDCRPLVDKIKQKANS-----CG 639
               N   + L      L T LP+KYL +PL TK +   D  PLV+KI+ +  S       
Sbjct: 895  ISPNAKTSILQQFPFELGT-LPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLS 953

Query: 638  ASN*AMLAS*PC*RLLC*EFTIFRI-KLC-------FSLSLWSKRLMVY*RTFYGMKNVR 483
             +    L       +     ++FR+ K C       FS  LWS   +   +       V 
Sbjct: 954  FAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVC 1013

Query: 482  KREVQK*AGRK*MLQRRKVDWILRT*GDWNNAFMAKHLWNICVGKDTLWIRWLHS*RLKG 303
            K + +   G K + +  +V              + K +W I   +D+LW++W++   ++ 
Sbjct: 1014 KLKEEGGLGLKPLKEANEVS-------------LLKLIWRILSARDSLWVKWVNKHLIRK 1060

Query: 302  VSIWEI*KRS-IGTNPWSKLLSLRSIMRHLVVNKVGNGKHTSFLFDQWHPMGILDHVLSQ 126
             + W + + + +G+  W K+L  R   R     +V +G  TSF  D W P+G L   +  
Sbjct: 1061 ETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGS 1120

Query: 125  RNIQSLRIQKSDSIGDVINKSKWPRRR 45
            R    L I  + ++ +V+N  +  R R
Sbjct: 1121 RGTIDLGIPNNATVAEVMNTHRRKRHR 1147


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  118 bits (296), Expect = 2e-24
 Identities = 90/331 (27%), Positives = 155/331 (46%), Gaps = 22/331 (6%)
 Frame = -1

Query: 971  YHPNCRDIKLTNVCFTDDLCILSAANDRSLKTVKETLQYFGQITWLKPNLKKSFVYLAGN 792
            YHP C+ + LT++ F DDL +LS    RS++ + +    F + + L+ +L+KS VYLAG 
Sbjct: 689  YHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGL 748

Query: 791  VDEAC--LSNTLEILNTSLPIKYLCIPLNTKELNARDCRPLVDKIKQKANSCGASN*AML 618
               A   +++     +  LP++YL +PL TK L+  DC PL+++++++  S  +      
Sbjct: 749  SATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTS------ 802

Query: 617  AS*PC*RLLC*EFTIFRIKL-CFSLSLWSKRLMVY*RTFYGMKNVRKREVQK------*A 459
                        F  +  +L   S  LWS  +  +    + +     RE++K       +
Sbjct: 803  -----------RFLSYAGRLNLISSVLWS--ICNFWLAAFRLPRKCIRELEKMCSAFLWS 849

Query: 458  GRK*MLQRRKVDWI------------LRT*GDWNNAFMAKHLWNICVGKDTLWIRWLHS* 315
            G +    + K+ W             LR+  + N+    K +W I    ++LW++W+   
Sbjct: 850  GTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQH 909

Query: 314  RLKGVSIWEI*KR-SIGTNPWSKLLSLRSIMRHLVVNKVGNGKHTSFLFDQWHPMGILDH 138
             L+  S WE+ +  S G+  W KLL  R + + L   +VGNGK TSF +D W  +G L  
Sbjct: 910  LLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLE 969

Query: 137  VLSQRNIQSLRIQKSDSIGDVINKSKWPRRR 45
                R +  L I +  ++     +  W  RR
Sbjct: 970  RTGDRGLIDLGISRRMTV-----EEAWTNRR 995


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|7267919|emb|CAB78261.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 662

 Score =  114 bits (285), Expect = 4e-23
 Identities = 87/329 (26%), Positives = 148/329 (44%), Gaps = 20/329 (6%)
 Frame = -1

Query: 971  YHPNCRDIKLTNVCFTDDLCILSAANDRSLKTVKETLQYFGQITWLKPNLKKSFVYLAGN 792
            YHP C+++ LT++ F DD+ +L+    RSL+ + E    F + + LK ++ K+ +Y AG 
Sbjct: 207  YHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGI 266

Query: 791  VDEAC--LSNTLEILNTSLPIKYLCIPLNTKELNARDCRPLVDKIKQKANSCGASN*AML 618
                C    +        LP++YLC+PL TK   ++D  PL+++IK++  +  A      
Sbjct: 267  SKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTA------ 320

Query: 617  AS*PC*RLLC*EFTIFRIKLCFSLSLWSKRLMVY*RTFYGMKNVRKREVQK------*AG 456
                  R L       R+ L  S+ LWS  +  +  + + +     RE+ K       +G
Sbjct: 321  ------RFLS---YAGRLNLVSSV-LWS--ICNFWLSAFRLPRECVREIDKLCSAFLWSG 368

Query: 455  RK*MLQRRKVDWI------------LRT*GDWNNAFMAKHLWNICVGKDTLWIRWLHS*R 312
             +    + K+ W             L++  + N+    K +W I    D+LW++W+ +  
Sbjct: 369  PELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYL 428

Query: 311  LKGVSIWEI*KRSIGTNPWSKLLSLRSIMRHLVVNKVGNGKHTSFLFDQWHPMGILDHVL 132
            LK  + W     S G+  W KLL  R   +      + NG+  SF +D W   G L  VL
Sbjct: 429  LKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKGRLIDVL 488

Query: 131  SQRNIQSLRIQKSDSIGDVINKSKWPRRR 45
             +R    + I K  ++ +      W RRR
Sbjct: 489  GERGQFDMGISKFKTLAEA-----WDRRR 512