BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00009525
         (2103 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      627   e-177
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   615   e-173
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      611   e-172
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   602   e-169
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   585   e-164

>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  627 bits (1618), Expect = e-177
 Identities = 332/510 (65%), Positives = 404/510 (79%), Gaps = 5/510 (0%)
 Frame = +1

Query: 388  MATSAAVIXXXXXXXXXXXXFYYSDITEKLSSGNEPAFSHHQASSARNLITARKSSNYSS 567
            M ++AAVI            FYYSD+ EKL+  ++ +   H   S +N+ITA+KSS+YS 
Sbjct: 1    MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 568  SFIPKRKELSVKAVKEHLD-TAE--DLEIWLQTPNQLERDSDDIEFHVDALLLLQKSMLE 738
            S +  RK  S K++KEH+D TA+  D+  W +   QL+ +SDD +  V+ LLLLQKSMLE
Sbjct: 61   SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE 120

Query: 739  KQFKLSSENKTKLVSPKDT--ANKMHITASGTSARRRRVDNRRKILSHKGSIREVNPSAP 912
            KQ+ LS E +T   SP+    + KMHIT SGTSARRRR+D+R+++L    S    + + P
Sbjct: 121  KQWNLSLE-QTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKP 179

Query: 913  LNDSTTPPDFLHSHLKGYVKGVLSQELLTHSEVVQLSRKIKTGLHLEEQRARLKERLGCE 1092
            L  S   P+ L + LKGYVKGV+S+ELLTH+EV+QLS+KI+ GL+LEEQ++RLKERLGCE
Sbjct: 180  LR-SIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCE 238

Query: 1093 PSEDQLASSVGITRTELQSKLLECSLAREKLAMSNVRLVMSIAQIYDNMGAEMSDXXXXX 1272
            PS+DQLA S+ ++RT+LQS L+ECSLARE+LAMSNVRLVMSIAQ YDN+GAEM+D     
Sbjct: 239  PSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGG 298

Query: 1273 XXXXXXXXEKFDCSKGFKISTYVYWWIRQGVSKAVVENSRTLRLPTHLHERLSMIRNAKI 1452
                    EKFD SKG+KISTYVYWWIRQGVS+A+VENSRTLRLPT+LHERLS+IRNAK 
Sbjct: 299  LIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKA 358

Query: 1453 KLEERGITPSVDKIAECLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGATLHSYIAD 1632
            +LEE+GITPSV+ IA  LNMSQ+KVRNATEA SK++SLDREAFPSLNGLPG TLHSYIAD
Sbjct: 359  RLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIAD 418

Query: 1633 THLENNPWHGVDGWSLKHEVNNLINSTLVARERDIIRLYYGLLDNECLTWEDISRRIGLS 1812
             HLENNPWHGVD W+LK EVNNLI+STL  RER+IIRLYYG LDNECLTWEDIS+RIGLS
Sbjct: 419  NHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYG-LDNECLTWEDISKRIGLS 477

Query: 1813 RERVRQVGLVALEKLKHAARKKRLEAMLVK 1902
            RERVRQVGLVALEKLKHAARK++L+AML+K
Sbjct: 478  RERVRQVGLVALEKLKHAARKRQLDAMLIK 507


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  615 bits (1587), Expect = e-173
 Identities = 332/511 (64%), Positives = 392/511 (76%), Gaps = 5/511 (0%)
 Frame = +1

Query: 388  MATSAAVIXXXXXXXXXXXXFYYSDITEKLSSGNEPAFSHHQASSARNLITARKSSNYSS 567
            MAT AAVI            FYYSD+TEKLSS NE   +H+Q +S + LI A+KSSNY  
Sbjct: 1    MAT-AAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGP 59

Query: 568  SF-IPKRKELSVKAVKEHLDTAE---DLEIWLQTPNQLERDSDDIEFHVDALLLLQKSML 735
            SF    R   S+KA+KEH+DTA          +T N +E +S D+++ V+ALLLLQKSML
Sbjct: 60   SFPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSML 119

Query: 736  EKQFKLSSENKTKLVSP-KDTANKMHITASGTSARRRRVDNRRKILSHKGSIREVNPSAP 912
            EKQ+ LS E      SP + +  K+ +T SG SAR+RR++ RRK LS      + N    
Sbjct: 120  EKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQ 179

Query: 913  LNDSTTPPDFLHSHLKGYVKGVLSQELLTHSEVVQLSRKIKTGLHLEEQRARLKERLGCE 1092
            L  S   P+ L + LKGYVKGV+S+ELL+H+EVV+LSR IK GL LE+ ++RLKERLGC+
Sbjct: 180  LK-SAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCD 238

Query: 1093 PSEDQLASSVGITRTELQSKLLECSLAREKLAMSNVRLVMSIAQIYDNMGAEMSDXXXXX 1272
            PS++Q+A+S+ I+R ELQSK + CSLAREKLAMSNVRLVMSIAQ YDNMGAEM+D     
Sbjct: 239  PSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 298

Query: 1273 XXXXXXXXEKFDCSKGFKISTYVYWWIRQGVSKAVVENSRTLRLPTHLHERLSMIRNAKI 1452
                    EKFD SKGF+ISTYVYWWIRQGVS+A+VENSRTLRLP HLHERL +IRNAKI
Sbjct: 299  LIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKI 358

Query: 1453 KLEERGITPSVDKIAECLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGATLHSYIAD 1632
            +LEE+G+TPS+D+IAE LN+SQ+KVRNATEAVSKVFSLDREAFPSLNGLPG T HSYIAD
Sbjct: 359  RLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIAD 418

Query: 1633 THLENNPWHGVDGWSLKHEVNNLINSTLVARERDIIRLYYGLLDNECLTWEDISRRIGLS 1812
              LENNPWHGVD W+LK EVN LIN TL  RE++IIRLYYG LDNE LTWEDIS+RIGLS
Sbjct: 419  NCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYG-LDNESLTWEDISKRIGLS 477

Query: 1813 RERVRQVGLVALEKLKHAARKKRLEAMLVKH 1905
            RERVRQVGLVALEKLKHAARKK+LEAMLVKH
Sbjct: 478  RERVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  611 bits (1575), Expect = e-172
 Identities = 328/490 (66%), Positives = 379/490 (77%), Gaps = 4/490 (0%)
 Frame = +1

Query: 448  FYYSDITEKLSSGNEPAFSHHQASSARNLITARKSSNYSSSFIPKRKELSVKAVKEHLDT 627
            FYYS +TEK    +     HH   S +N+I A+ SSNYS S++  RK+ SVKA+KEH+D 
Sbjct: 18   FYYSVLTEKFCVSDHALPCHH-FPSPKNVINAKNSSNYSPSYVSNRKKQSVKALKEHVDI 76

Query: 628  AE----DLEIWLQTPNQLERDSDDIEFHVDALLLLQKSMLEKQFKLSSENKTKLVSPKDT 795
            A     D E W+Q   QL+  S   E  V+ LLLLQKSMLEKQ+ LS+E    + +  + 
Sbjct: 77   ASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQWNLSAEKA--MTNENNC 134

Query: 796  ANKMHITASGTSARRRRVDNRRKILSHKGSIREVNPSAPLNDSTTPPDFLHSHLKGYVKG 975
              KM IT SGTSARRRR+D R++ L  K S    + S  L  S   P+ L +  KGY+ G
Sbjct: 135  KKKMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLR-SVIGPELLQNRSKGYING 193

Query: 976  VLSQELLTHSEVVQLSRKIKTGLHLEEQRARLKERLGCEPSEDQLASSVGITRTELQSKL 1155
            V+ QELLTH+EVVQLS+KIK GL+LEEQ++RLKERLGCEPS+DQLA S+ I+R +L+S L
Sbjct: 194  VVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQLAISLKISRADLRSTL 253

Query: 1156 LECSLAREKLAMSNVRLVMSIAQIYDNMGAEMSDXXXXXXXXXXXXXEKFDCSKGFKIST 1335
            +ECSLAREKLAMSNVRLVMSIAQ YD  G EM+D             EKFD S+GFKIST
Sbjct: 254  IECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLLRGIEKFDHSRGFKIST 313

Query: 1336 YVYWWIRQGVSKAVVENSRTLRLPTHLHERLSMIRNAKIKLEERGITPSVDKIAECLNMS 1515
            YVYWWIRQGVS+A+VENSRTLRLP HLHERLS+IRNAKIKL+E GITPS++KIAECLNMS
Sbjct: 314  YVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKENGITPSIEKIAECLNMS 373

Query: 1516 QRKVRNATEAVSKVFSLDREAFPSLNGLPGATLHSYIADTHLENNPWHGVDGWSLKHEVN 1695
            Q+KVRNATEA SKVFSLDREAFPSLNGLPG TLHSYIAD  LEN PWHGVD W LK EVN
Sbjct: 374  QKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLENIPWHGVDEWMLKDEVN 433

Query: 1696 NLINSTLVARERDIIRLYYGLLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARK 1875
            NLI+STL  RER+I+RLYYG LDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARK
Sbjct: 434  NLISSTLREREREIVRLYYG-LDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARK 492

Query: 1876 KRLEAMLVKH 1905
            +RL+AMLVKH
Sbjct: 493  RRLDAMLVKH 502


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  602 bits (1553), Expect = e-169
 Identities = 319/512 (62%), Positives = 391/512 (76%), Gaps = 6/512 (1%)
 Frame = +1

Query: 388  MATSAAVIXXXXXXXXXXXXFYYSDITEKLSSGNEPAFSHHQASSARNLITARKSSNYSS 567
            M  +AAVI            FYYSD+TEKLS+ N+   +++  ++ +N+I A+KSSNY  
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 568  SF-IPKRKELSVKAVKEHLDTAE---DLEIWLQTPNQLERDSDDIEFHVDALLLLQKSML 735
            SF    R   S+KA+KEH+DTA    ++  W +T +  E +S  +++ V+ALLLLQKSML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 736  EKQFKLSSE--NKTKLVSPKDTANKMHITASGTSARRRRVDNRRKILSHKGSIREVNPSA 909
            EKQ+ LS E  N +   S K+   K+ +T SG SAR+RRV+NRRK  +    + + +   
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNN-KKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFK 179

Query: 910  PLNDSTTPPDFLHSHLKGYVKGVLSQELLTHSEVVQLSRKIKTGLHLEEQRARLKERLGC 1089
             L  S + PD L + LKGYVKGV+S E+L H+EVV+LSR I+ GL  E+ ++RLKERLGC
Sbjct: 180  FLR-SVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGC 238

Query: 1090 EPSEDQLASSVGITRTELQSKLLECSLAREKLAMSNVRLVMSIAQIYDNMGAEMSDXXXX 1269
            EPS++Q+A S+ I+R +LQSKL++CSLAREKLAMSNVRLVMSIAQ YDNMGAEM+D    
Sbjct: 239  EPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQG 298

Query: 1270 XXXXXXXXXEKFDCSKGFKISTYVYWWIRQGVSKAVVENSRTLRLPTHLHERLSMIRNAK 1449
                     EKFD SKGFKISTYVYWWIRQGVS+A+V+NSRTLRLP HLHERL +IRNAK
Sbjct: 299  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAK 358

Query: 1450 IKLEERGITPSVDKIAECLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGATLHSYIA 1629
            I+LEE+G+TPS+D+IAE LNMSQRKVRNATEA+SKVFSLDREAFPSLNGLPG T HSYIA
Sbjct: 359  IRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIA 418

Query: 1630 DTHLENNPWHGVDGWSLKHEVNNLINSTLVARERDIIRLYYGLLDNECLTWEDISRRIGL 1809
            D   ENNPWHGVD W+LK EVN LI+STL  RE++IIRLY+G LD ECLTWEDIS+R+GL
Sbjct: 419  DNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHG-LDQECLTWEDISKRMGL 477

Query: 1810 SRERVRQVGLVALEKLKHAARKKRLEAMLVKH 1905
            SRERVRQVGLVALEKLKHAARK+  EAMLVKH
Sbjct: 478  SRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  585 bits (1508), Expect = e-164
 Identities = 317/511 (62%), Positives = 385/511 (75%), Gaps = 5/511 (0%)
 Frame = +1

Query: 388  MATSAAVIXXXXXXXXXXXXFYYSDITEKLSSG-NEPAFSHHQASSARNLITARKSSNYS 564
            M  +AAVI             +YSD+ EKLSS  N+  F HH +   +NLI+A+K SNY+
Sbjct: 1    MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT 60

Query: 565  SSFIPKRKELSVKAVKEHLDTAEDLEIWLQTPNQLERDSDDIEFHVDALLLLQKSMLEKQ 744
             S    R   S+KA+KEH+++A          +    + +D E+ V+A LLLQKSMLEKQ
Sbjct: 61   PS--SNRSIQSMKALKEHVESASAPSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEKQ 118

Query: 745  FKLS----SENKTKLVSPKDTANKMHITASGTSARRRRVDNRRKILSHKGSIREVNPSAP 912
            + LS     E + + +  K    +  +T SGTSAR+RR+  R+++++ K   R     A 
Sbjct: 119  WNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRVMNEKSKSRV---RAA 175

Query: 913  LNDSTTPPDFLHSHLKGYVKGVLSQELLTHSEVVQLSRKIKTGLHLEEQRARLKERLGCE 1092
            L         + + LKGYVKGV+S+ELLTH++VV LS KIK GL LE+ ++RLKER+G E
Sbjct: 176  LG--------VENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSE 227

Query: 1093 PSEDQLASSVGITRTELQSKLLECSLAREKLAMSNVRLVMSIAQIYDNMGAEMSDXXXXX 1272
            P+++Q+A+S+ ++R ELQSKL+ECSLAREKLAMSNVRLVMSIAQ YDNMGAEM+D     
Sbjct: 228  PTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 287

Query: 1273 XXXXXXXXEKFDCSKGFKISTYVYWWIRQGVSKAVVENSRTLRLPTHLHERLSMIRNAKI 1452
                    EKFD SKGFKISTYVYWWIRQGVS+A+VENSRTLRLP+HLHERLS+IRNAKI
Sbjct: 288  LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKI 347

Query: 1453 KLEERGITPSVDKIAECLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGATLHSYIAD 1632
            +LEE+GITPS+D+IAECLNMSQ+KVRNATEA+SKVFSLDREAFPSLNGLPG TLHSYIAD
Sbjct: 348  RLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIAD 407

Query: 1633 THLENNPWHGVDGWSLKHEVNNLINSTLVARERDIIRLYYGLLDNECLTWEDISRRIGLS 1812
              LENNPWHGVD W+LK EVN LIN+TL  RERDIIRLYYG LDNECLTWEDIS+RIGLS
Sbjct: 408  VRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYG-LDNECLTWEDISKRIGLS 466

Query: 1813 RERVRQVGLVALEKLKHAARKKRLEAMLVKH 1905
            RERVRQVGLVALEKLK+AARK R+EAMLVK+
Sbjct: 467  RERVRQVGLVALEKLKNAARKGRMEAMLVKY 497