BLASTX nr result

ID: Lithospermum22_contig00009491 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00009491
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM63013.1| unknown [Arabidopsis thaliana]                          74   2e-11
ref|NP_195417.1| red chlorophyll catabolite reductase [Arabidops...    74   2e-11
pdb|3AGB|A Chain A, F218v Mutant Of The Substrate-Free Form Of R...    70   2e-10
pdb|3AGA|A Chain A, Crystal Structure Of Rcc-Bound Red Chlorophy...    70   2e-10
pdb|2ZXL|A Chain A, Crystal Structure Of Red Chlorophyll Catabol...    70   2e-10

>gb|AAM63013.1| unknown [Arabidopsis thaliana]
          Length = 319

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 43/94 (45%), Positives = 55/94 (58%), Gaps = 8/94 (8%)
 Frame = -3

Query: 261 PRTSICSPPSKNFLPRCS--------SPLTSRFMDFPFVSPPHKQLMVDLISSVETXXXX 106
           P TS  S  SKN  PR            L  +FM+FP+VSP  KQLMVDL+S+VE     
Sbjct: 20  PLTSKPSRFSKNLRPRAQFQSMEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQS 79

Query: 105 XXXXXXXXPDVQHFESPNGDAQGSLYVRSGDESS 4
                   PDV++F +PNG A+ SL++RSGD+SS
Sbjct: 80  QLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSS 113


>ref|NP_195417.1| red chlorophyll catabolite reductase [Arabidopsis thaliana]
           gi|30913254|sp|Q8LDU4.2|RCCR_ARATH RecName: Full=Red
           chlorophyll catabolite reductase, chloroplastic;
           Short=AtRCCR; Short=RCC reductase; AltName:
           Full=Accelerated cell death protein 2; Flags: Precursor
           gi|12484130|gb|AAG53980.1|AF326347_1 accelerated cell
           death 2 [Arabidopsis thaliana]
           gi|2464880|emb|CAB16763.1| putative protein [Arabidopsis
           thaliana] gi|7270649|emb|CAB80366.1| putative protein
           [Arabidopsis thaliana] gi|15010554|gb|AAK73936.1|
           AT4g37000/C7A10_360 [Arabidopsis thaliana]
           gi|20147383|gb|AAM10401.1| AT4g37000/C7A10_360
           [Arabidopsis thaliana] gi|332661333|gb|AEE86733.1| red
           chlorophyll catabolite reductase [Arabidopsis thaliana]
          Length = 319

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 43/94 (45%), Positives = 55/94 (58%), Gaps = 8/94 (8%)
 Frame = -3

Query: 261 PRTSICSPPSKNFLPRCS--------SPLTSRFMDFPFVSPPHKQLMVDLISSVETXXXX 106
           P TS  S  SKN  PR            L  +FM+FP+VSP  KQLMVDL+S+VE     
Sbjct: 20  PLTSKPSRFSKNLRPRAQFQSMEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQS 79

Query: 105 XXXXXXXXPDVQHFESPNGDAQGSLYVRSGDESS 4
                   PDV++F +PNG A+ SL++RSGD+SS
Sbjct: 80  QLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSS 113


>pdb|3AGB|A Chain A, F218v Mutant Of The Substrate-Free Form Of Red Chlorophyll
           Catabolite Reductase From Arabidopsis Thaliana
           gi|305677660|pdb|3AGB|B Chain B, F218v Mutant Of The
           Substrate-Free Form Of Red Chlorophyll Catabolite
           Reductase From Arabidopsis Thaliana
           gi|305677661|pdb|3AGC|A Chain A, F218v Mutant Of The
           Substrate-Bound Red Chlorophyll Catabolite Reductase
           From Arabidopsis Thaliana gi|305677662|pdb|3AGC|B Chain
           B, F218v Mutant Of The Substrate-Bound Red Chlorophyll
           Catabolite Reductase From Arabidopsis Thaliana
          Length = 276

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
 Frame = -3

Query: 204 PLTSR--FMDFPFVSPPHKQLMVDLISSVETXXXXXXXXXXXXPDVQHFESPNGDAQGSL 31
           PL SR  FM+FP+VSP  KQLMVDL+S+VE             PDV++F +PNG A+ SL
Sbjct: 2   PLGSRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASL 61

Query: 30  YVRSGDESS 4
           ++RSGD+SS
Sbjct: 62  HIRSGDKSS 70


>pdb|3AGA|A Chain A, Crystal Structure Of Rcc-Bound Red Chlorophyll Catabolite
           Reductase From Arabidopsis Thaliana
           gi|305677658|pdb|3AGA|B Chain B, Crystal Structure Of
           Rcc-Bound Red Chlorophyll Catabolite Reductase From
           Arabidopsis Thaliana
          Length = 276

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
 Frame = -3

Query: 204 PLTSR--FMDFPFVSPPHKQLMVDLISSVETXXXXXXXXXXXXPDVQHFESPNGDAQGSL 31
           PL SR  FM+FP+VSP  KQLMVDL+S+VE             PDV++F +PNG A+ SL
Sbjct: 2   PLGSRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASL 61

Query: 30  YVRSGDESS 4
           ++RSGD+SS
Sbjct: 62  HIRSGDKSS 70


>pdb|2ZXL|A Chain A, Crystal Structure Of Red Chlorophyll Catabolite Reductase
           From Arabidopsis Thaliana gi|229597685|pdb|2ZXL|B Chain
           B, Crystal Structure Of Red Chlorophyll Catabolite
           Reductase From Arabidopsis Thaliana
          Length = 285

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 34/66 (51%), Positives = 46/66 (69%)
 Frame = -3

Query: 201 LTSRFMDFPFVSPPHKQLMVDLISSVETXXXXXXXXXXXXPDVQHFESPNGDAQGSLYVR 22
           L  +FM+FP+VSP  KQLMVDL+S+VE             PDV++F +PNG A+ SL++R
Sbjct: 14  LRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIR 73

Query: 21  SGDESS 4
           SGD+SS
Sbjct: 74  SGDKSS 79


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