BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00009136
         (3532 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1469   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1461   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1457   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1456   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1430   0.0  

>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1469 bits (3802), Expect = 0.0
 Identities = 739/1118 (66%), Positives = 875/1118 (78%), Gaps = 11/1118 (0%)
 Frame = -2

Query: 3486 MGRTIQVSSFPYLIPAETVKAFLEEYTGRGTVCALEVRTCKGGQRAYARVQFINDQSAAL 3307
            MG+TIQV  FPYL+ AE VK FLE +TG GTV ALEV+  KGG+RA+A+VQF N++SA  
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60

Query: 3306 IVFLAKQRLYYGSTYLKAWECDIDMTSKPKTYVNEMDKLNLSFGCQISHDKFSVLWKQTG 3127
            I+ LA + LYYG +YLKAWE   D+  +P+TYV  MD + L+FGCQIS  KF+VL  +  
Sbjct: 61   IIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGSKD- 118

Query: 3126 VSVXXXXXXXXXXXXXXFNSVEYKLELRYQNIWQITLHRPSNRATNYLLIQLFGAPRIHQ 2947
            VS+                S +YKL+L Y+NIWQ+ LHRP  +   +LL+QLFGAPRI++
Sbjct: 119  VSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYK 178

Query: 2946 KQVDSIYSFFKEVQDDQWVRATDFTPSFCIGLASGICLQLPLGVQIPNFREYLVYYKESD 2767
            +  DS YSFFKE  DDQWVR TDFTPS+ IGL+S +CL+   GVQ+PNF E   YYKES 
Sbjct: 179  RLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPNFSESFFYYKESM 237

Query: 2766 TPFIMENGSPYC-SNKM-LVPIIQSPQLFKLPFEVLFKICTLVQTGCLPGPKVDANFFQL 2593
              FI++ G  +  S K+ LVPI+  P+  +LP+++LFKI +L+Q GC PG  ++ NFFQL
Sbjct: 238  NQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQL 297

Query: 2592 CFPWNINEVSIIERVLEDMYYVKECCYEPTRWIKERFEKYRMLGKLPKSPAVVLDDGLVY 2413
              P   N ++ IE  LE +YY+KECCY+P RW+ E++++Y    +LPKSP + LDDGLVY
Sbjct: 298  VDPRRRN-IACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVY 356

Query: 2412 VRRVQVTPCKVYFSGPEVNMSNRVLRNYPNDLDNFLRISFVDEEWEKMYSADLSLR---- 2245
            VRRV VTPCKVYF GPEVN+SNRVLRNY  D++NFLR+SFVDEEWEK++S DL  R    
Sbjct: 357  VRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTG 416

Query: 2244 -GSKTELYYRILLTLKNGITIGDKKFEFLAFSSSQLRDNSAWMFASRPGLTAADIRMWMG 2068
             G++T++Y RIL TL+NG  IGDK+FEFLAFSSSQLRDNS WMFASRPGLTA DIR WMG
Sbjct: 417  NGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMG 476

Query: 2067 DFSQIKNVAKYAARLGQSFGSSTETLSVGKHEIEKIPDIT-TYGQPKYVFSDGIGKISAD 1891
            DF QI+NVAKYAARLGQSFGSS ETLSVG+HE+E IPD+  +     Y+FSDGIGKISAD
Sbjct: 477  DFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISAD 536

Query: 1890 FAHRVAIKCGLKSFTPSAFQIRYAGYKGVVAVDPCSSVKLSLRKSMRKYKSKNTKLDVLA 1711
            FAHRV IKCGL+ +TPS+FQIRY GYKGVVAVDP SS+KLSLRKSM KY+S N KLDVL 
Sbjct: 537  FAHRVTIKCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLG 595

Query: 1710 WSKYQPCYLNRQIITLLSTLGIPDDAFLKKQRNAVAQLDSILTDPSRAQDALELMSPGES 1531
            WSKYQPCYLNRQ++TLLSTLG+ DD   +KQ  AV QLD+IL D  +AQ+ALELMSPGE+
Sbjct: 596  WSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGEN 655

Query: 1530 TNILKEMLKCGYKPDAEPFLSMMLQAFRSSKLLDLRTKARIFIPDGRSMIGCLDETGTLE 1351
            TNILKEML CGY PDAEPFLSMMLQ FR+SKLLDLRT+ RIFIP+GR+M+GCLDE+ TLE
Sbjct: 656  TNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLE 715

Query: 1350 YGEVFVQFASAASRQFYDNSLAFGDSSSRGRCSIHVGRVVVAKNPCLHPGDVRVLKAVNV 1171
            YG+VFVQF+ A  RQF++ S  F DS S     I  G VVVAKNPCLHPGD+RVL+AV+V
Sbjct: 716  YGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDV 775

Query: 1170 AALHHMVDCVVFPQNGMRPHPNECSGSDLDGDVYFVSWDRDLIPSKQISPMDYTAAPTIE 991
             ALHHMVDCVVFPQ G RPHPNECSGSDLDGD+YFV WD DLIP +Q+  MDYT APT +
Sbjct: 776  PALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQ 835

Query: 990  LDHDVTIEEVQEYFTNYIVNDSLGIIANAHTVFADRELLRAMSQPCIELAQLFSTAVDFP 811
            LDHDVTIEEV+EYFTNYI+NDSLGIIANAH VFADRE   AMS PC +LAQLFS AVDFP
Sbjct: 836  LDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFP 895

Query: 810  KTGVPAVIPPDLRVKVYPDFMEKSDKTTYESQSVIGKLFREVKKISP-VESIEAFTREVA 634
            KTGVPA IP  LR K YPDFMEK DK TY S+ VIGKLF++VK  +P   SI  FTR+VA
Sbjct: 896  KTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVA 955

Query: 633  RKSYDHDMEVEGFEQYIDEAFEFKMEYDYKLGNLMDYYGIKTEAEILSGGILKMSKSFDR 454
            RKSYD DM V+GFE YIDEAF +K EYD KLGNLMDYYGIKTEAEILSGGI+K SK+FDR
Sbjct: 956  RKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1015

Query: 453  RKDAEAVSFAMRSLRKEARSWFSKKGSEPDDDPYAKASAWYHVTYHHSYWGSYDEGTDRA 274
            RKDAEA+  A+R LRKEAR+WF ++     DD  AKASAWYHVTYHH+YWG Y+EG  R 
Sbjct: 1016 RKDAEAIGVAVRCLRKEARAWFKRRSD--IDDMLAKASAWYHVTYHHTYWGLYNEGLKRD 1073

Query: 273  HFISFPWCVYDKLIHIKRNRSNR--IPDSLPIQQQLNR 166
            HFISFPWCVYD+LI IK+ ++ +  +P    +  QL+R
Sbjct: 1074 HFISFPWCVYDQLIQIKKAKARKRPVPHLSSLGSQLSR 1111


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1461 bits (3781), Expect = 0.0
 Identities = 733/1101 (66%), Positives = 857/1101 (77%), Gaps = 10/1101 (0%)
 Frame = -2

Query: 3486 MGRTIQVSSFPYLIPAETVKAFLEEYTGRGTVCALEVRTCKGG-QRAYARVQFINDQSAA 3310
            M +TIQV  FP ++ A+ +K FLE+YTG GT+ ALE++  + G    +A+VQF + + A 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 3309 LIVFLAKQRLYYGSTYLKAWECDIDMTSKPKTYVNEMDKLNLSFGCQISHDKFSVLWKQT 3130
             I+ L K++++YG  YLKA E D+D+  KP+ +++ MD++ L FGCQ+S ++F VLWK  
Sbjct: 61   FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120

Query: 3129 GVSVXXXXXXXXXXXXXXFNSVEYKLELRYQNIWQITLHRPSNRATNYLLIQLFGAPRIH 2950
             VSV                S EYKLEL Y+NIWQI L  P  + T +LLIQL GAP+I+
Sbjct: 121  NVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIY 180

Query: 2949 QKQVDSIYSFFKEVQDDQWVRATDFTPSFCIGLASGICLQLPLGVQIPNFREYLVYYKES 2770
            +K V  +  +FKE  DDQWVR  DFTPS  IG +  +CL+LP G Q+PNFRE   YYKE+
Sbjct: 181  EKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKEN 240

Query: 2769 DTPFIMENGSPYCSNKMLVPIIQSPQLFKLPFEVLFKICTLVQTGCLPGPKVDANFFQLC 2590
            D  FI+E+GS Y  N  LVPI+  PQ   LPF++LFKI TLVQ GCL GP +D +FF+L 
Sbjct: 241  DGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLV 300

Query: 2589 FPWNINEVSIIERVLEDMYYVKECCYEPTRWIKERFEKYRMLGKLPKSPAVVLDDGLVYV 2410
             P     +S IE  LE +Y++KECCYEP RW+ E++  Y +   +  SPA+ LD GLVYV
Sbjct: 301  DPERF-PISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPVAGSPAISLDTGLVYV 358

Query: 2409 RRVQVTPCKVYFSGPEVNMSNRVLRNYPNDLDNFLRISFVDEEWEKMYSADLSLR----G 2242
            RRVQ+TPCKVYF GPEVN+SNRVLRNYP D+DNFLR+SF+DE  EK++S  +S R    G
Sbjct: 359  RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKEG 418

Query: 2241 SKTELYYRILLTLKNGITIGDKKFEFLAFSSSQLRDNSAWMFASRPGLTAADIRMWMGDF 2062
             +T +Y RIL  L+NGI IGDKKF+FLAFSSSQLRDNSAWMFASRPGLTAA+IR WMGDF
Sbjct: 419  RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDF 478

Query: 2061 SQIKNVAKYAARLGQSFGSSTETLSVGKHEIEKIPDITTY-GQPKYVFSDGIGKISADFA 1885
            SQI+NVAKYAARLGQSF SS ETL V K EIE IPDI  + G+  YVFSDGIGKIS   A
Sbjct: 479  SQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLA 538

Query: 1884 HRVAIKCGLKSFTPSAFQIRYAGYKGVVAVDPCSSVKLSLRKSMRKYKSKNTKLDVLAWS 1705
            HRVAIKCG KS TPSAFQIRY GYKGVVAVDP SS KLSLRKSM KY+S NT LDVLAWS
Sbjct: 539  HRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWS 598

Query: 1704 KYQPCYLNRQIITLLSTLGIPDDAFLKKQRNAVAQLDSILTDPSRAQDALELMSPGESTN 1525
            KYQP +LNRQ+ITLLSTLG+ D  F KKQR AV QLD+IL DP  AQ+ALELMSPGE+TN
Sbjct: 599  KYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTN 658

Query: 1524 ILKEMLKCGYKPDAEPFLSMMLQAFRSSKLLDLRTKARIFIPDGRSMIGCLDETGTLEYG 1345
            +LKEML CGYKPDAEPFLSMMLQ FR++KLL+LRTK RIF+P+GRSM+GCLDET TLEYG
Sbjct: 659  VLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYG 718

Query: 1344 EVFVQFASAASRQFYDNSLAFGDSSSRGRCSIHVGRVVVAKNPCLHPGDVRVLKAVNVAA 1165
            EVFVQ +    RQ + +SL F  S S     I  G++VVAKNPCLHPGDVRVL AVNV  
Sbjct: 719  EVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPT 778

Query: 1164 LHHMVDCVVFPQNGMRPHPNECSGSDLDGDVYFVSWDRDLIPSKQISPMDYTAAPTIELD 985
            LHHMVDCVVFPQ G RPHPNECSGSDLDGD+YFV WDRDLIP +QI+PMDYT APT  LD
Sbjct: 779  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLD 838

Query: 984  HDVTIEEVQEYFTNYIVNDSLGIIANAHTVFADRELLRAMSQPCIELAQLFSTAVDFPKT 805
            HDV IEEV+EYFTNYIVNDSLGIIANAHTVFAD+E  +A   PC ELA+LFS AVDFPKT
Sbjct: 839  HDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKT 898

Query: 804  GVPAVIPPDLRVKVYPDFMEKSDKTTYESQSVIGKLFREVKKISPVE-SIEAFTREVARK 628
            GVPA IP +LRVK YPDFMEK+DK TYESQSVIGKLFREVK I+P   +I +FTR+VAR+
Sbjct: 899  GVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQ 958

Query: 627  SYDHDMEVEGFEQYIDEAFEFKMEYDYKLGNLMDYYGIKTEAEILSGGILKMSKSFDRRK 448
            SYD DMEV GFE Y+ +AF +K EYDYKLGNLMDYYGIKTE+EILSG I++MSKSFDRRK
Sbjct: 959  SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRK 1018

Query: 447  DAEAVSFAMRSLRKEARSWFSKKGSEPD---DDPYAKASAWYHVTYHHSYWGSYDEGTDR 277
            DAEA+  A++SLRKEAR+WF+K GSE D   DD YAKASAWYHVTYH  YWG Y+EG DR
Sbjct: 1019 DAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDR 1078

Query: 276  AHFISFPWCVYDKLIHIKRNR 214
             HF+SFPWCVYDKLIH KR +
Sbjct: 1079 DHFLSFPWCVYDKLIHTKRKK 1099


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1457 bits (3771), Expect = 0.0
 Identities = 728/1106 (65%), Positives = 863/1106 (78%), Gaps = 10/1106 (0%)
 Frame = -2

Query: 3486 MGRTIQVSSFPYLIPAETVKAFLEEYTGRGTVCALEVRTCKGGQRAYARVQFINDQSAAL 3307
            MG+TIQV  FPYL+ AE VK FLE +TG GTV ALEV+  KGG+RA+A+VQF N++SA +
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60

Query: 3306 IVFLAKQRLYYGSTYLKAWECDIDMTSKPKTYVNEMDKLNLSFGCQISHDKFSVLWKQTG 3127
            I+ LA + LYYG +YLKAWE    +  +P+TYV  MD + L+FGCQIS  KF+VL  +  
Sbjct: 61   IIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGSKV- 118

Query: 3126 VSVXXXXXXXXXXXXXXFNSVEYKLELRYQNIWQITLHRPSNRATNYLLIQLFGAPRIHQ 2947
            VS+              + S +YKL+L Y+NIWQ+ LHRP  +   +LL+QL GAPRI++
Sbjct: 119  VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYK 178

Query: 2946 KQVDSIYSFFKEVQDDQWVRATDFTPSFCIGLASGICLQLPLGVQIPNFREYLVYYKESD 2767
            +  DS YSFFKE  DDQWVR TDFTPS+ IGL+S +CL+   GV++PNF E   YYKES 
Sbjct: 179  RLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSESFFYYKESA 237

Query: 2766 TPFIMENGSPYCSNKM---LVPIIQSPQLFKLPFEVLFKICTLVQTGCLPGPKVDANFFQ 2596
               I++ G  +  ++    LVPI+  P+  +LP+++LFKI +L+Q GC PG  ++ NFFQ
Sbjct: 238  NQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 297

Query: 2595 LCFPWNINEVSIIERVLEDMYYVKECCYEPTRWIKERFEKYRMLGKLPKSPAVVLDDGLV 2416
            L  P   N ++ IE  LE +YY+KECCY+P RW+ E++++Y    +LPKSP++ LDDGLV
Sbjct: 298  LVDPRRRN-IACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLV 356

Query: 2415 YVRRVQVTPCKVYFSGPEVNMSNRVLRNYPNDLDNFLRISFVDEEWEKMYSADLSLRGS- 2239
            YVRRV VTPCKVYF GPEVN+SNRVLRNY  D+DNFLR+SFVDEEWEK++S DL  R S 
Sbjct: 357  YVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRAST 416

Query: 2238 ----KTELYYRILLTLKNGITIGDKKFEFLAFSSSQLRDNSAWMFASRPGLTAADIRMWM 2071
                +T++Y RIL TL+NG  IGDKKFEFLAFSSSQLRDNS WMFASRPGLTA DIR WM
Sbjct: 417  GNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 476

Query: 2070 GDFSQIKNVAKYAARLGQSFGSSTETLSVGKHEIEKIPDIT-TYGQPKYVFSDGIGKISA 1894
            G F QI+NVAKYAARLGQSFGSS ETLSVG+HE+E IPD+  +     Y+FSDGIGKISA
Sbjct: 477  GGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISA 536

Query: 1893 DFAHRVAIKCGLKSFTPSAFQIRYAGYKGVVAVDPCSSVKLSLRKSMRKYKSKNTKLDVL 1714
            DFA RVA+KCGL+ +TPS FQIRY GYKGVVAVDP SS+KLSLR SM KY+S N KLDVL
Sbjct: 537  DFARRVAVKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVL 595

Query: 1713 AWSKYQPCYLNRQIITLLSTLGIPDDAFLKKQRNAVAQLDSILTDPSRAQDALELMSPGE 1534
             WSKYQPCYLNRQ++TLLSTLG+ DD F +KQ  AV QLD+IL D  +AQ+ALELMSPGE
Sbjct: 596  GWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGE 655

Query: 1533 STNILKEMLKCGYKPDAEPFLSMMLQAFRSSKLLDLRTKARIFIPDGRSMIGCLDETGTL 1354
            +TNILKEML CGY PDAEPFLSMMLQ FR+SKLLDLRT++RIFIP+GR+M+GCLDE+ TL
Sbjct: 656  NTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTL 715

Query: 1353 EYGEVFVQFASAASRQFYDNSLAFGDSSSRGRCSIHVGRVVVAKNPCLHPGDVRVLKAVN 1174
            EYG+VFVQF     RQFY+ S  F DS S     I  G VVVAKNPCLHPGD+RVL+AV+
Sbjct: 716  EYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVD 775

Query: 1173 VAALHHMVDCVVFPQNGMRPHPNECSGSDLDGDVYFVSWDRDLIPSKQISPMDYTAAPTI 994
            V ALHHMVDCVVFPQ G RPHPNECSGSDLDGD+YFV WD DL+P +Q  PMDYT AP+ 
Sbjct: 776  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPST 835

Query: 993  ELDHDVTIEEVQEYFTNYIVNDSLGIIANAHTVFADRELLRAMSQPCIELAQLFSTAVDF 814
            +LDHDVTIEEV+EYFTNYIVNDSLGIIANAH VFADRE   AMS PC +LAQLFS AVDF
Sbjct: 836  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDF 895

Query: 813  PKTGVPAVIPPDLRVKVYPDFMEKSDKTTYESQSVIGKLFREVKKISP-VESIEAFTREV 637
            PKTGVPA IP  LR K YPDFMEK DK TY S+ VIGKLF++VK  +P   SI  FT +V
Sbjct: 896  PKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDV 955

Query: 636  ARKSYDHDMEVEGFEQYIDEAFEFKMEYDYKLGNLMDYYGIKTEAEILSGGILKMSKSFD 457
            ARKSYD DM V GFE YIDEAF +K EYD KLGNLMDYYGIKTEAEILSGGI+K SK+FD
Sbjct: 956  ARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD 1015

Query: 456  RRKDAEAVSFAMRSLRKEARSWFSKKGSEPDDDPYAKASAWYHVTYHHSYWGSYDEGTDR 277
            RRKDA+A+  A+RSLRKEAR+WF ++     DD  AKASAWYHVTYHH+YWG Y+EG  R
Sbjct: 1016 RRKDADAIGVAVRSLRKEARTWFKRRSD--IDDMLAKASAWYHVTYHHTYWGFYNEGLKR 1073

Query: 276  AHFISFPWCVYDKLIHIKRNRSNRIP 199
             HFISFPWC+YD+LI IK+ ++ + P
Sbjct: 1074 DHFISFPWCIYDQLIQIKKAKARKKP 1099


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1456 bits (3768), Expect = 0.0
 Identities = 729/1104 (66%), Positives = 864/1104 (78%), Gaps = 8/1104 (0%)
 Frame = -2

Query: 3486 MGRTIQVSSFPYLIPAETVKAFLEEYTGRGTVCALEVRTCKGGQRAYARVQFINDQSAAL 3307
            MG+TIQV  FPYL+ AE VK+FLE+YTG GTVCALEV+  KGG RA+A+VQF ++ SA  
Sbjct: 1    MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60

Query: 3306 IVFLAKQRLYYGSTYLKAWECDIDMTSKPKTYVNEMDKLNLSFGCQISHDKFSVLWKQTG 3127
            I+ LA  RLY+GS+YLKAWE   D+    + YV++MD + L+FGCQIS DKF+VL   T 
Sbjct: 61   IITLANNRLYFGSSYLKAWEMKTDIVQL-RAYVDQMDGITLNFGCQISDDKFAVLGS-TE 118

Query: 3126 VSVXXXXXXXXXXXXXXFNSVEYKLELRYQNIWQITLHRPSNRATNYLLIQLFGAPRIHQ 2947
            VS+                S +YKL+L Y+NIWQ+ LHRP  +   +LLIQLFGAPRI++
Sbjct: 119  VSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178

Query: 2946 KQVDSIYSFFKEVQDDQWVRATDFTPSFCIGLASGICLQLPLGVQIPNFREYLVYYKESD 2767
            +  +S YSFFKE  DDQWVR TDF PS+ IGL+S +CLQ   GV++PNF E   +Y E +
Sbjct: 179  RLENSCYSFFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRGVRLPNFEESFFHYAERE 237

Query: 2766 TPFIMENGSPY--CSNKMLVPIIQSPQLFKLPFEVLFKICTLVQTGCLPGPKVDANFFQL 2593
                ++ G  +       LVP +Q P+   +P+++LFKI +LVQ GC+PGP ++  FF+L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRL 297

Query: 2592 CFPWNINEVSIIERVLEDMYYVKECCYEPTRWIKERFEKYRMLGKLPKSPAVVLDDGLVY 2413
              P   N V+ IE  LE +YY+KECCY+P RW+ E+++ Y    + PKSP++ LDDGLVY
Sbjct: 298  VDPRRRN-VACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356

Query: 2412 VRRVQVTPCKVYFSGPEVNMSNRVLRNYPNDLDNFLRISFVDEEWEKMYSADLSLRGS-- 2239
            VRRV VTPCKVYF GPEVN+SNRVLRNY  D+DNFLR+SFVDEEWEK+YS DL  + S  
Sbjct: 357  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416

Query: 2238 ---KTELYYRILLTLKNGITIGDKKFEFLAFSSSQLRDNSAWMFASRPGLTAADIRMWMG 2068
               +T +Y RIL TL+ G  IGDKKFEFLAFSSSQLRDNS WMFASRPGLTA DIR WMG
Sbjct: 417  SGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMG 476

Query: 2067 DFSQIKNVAKYAARLGQSFGSSTETLSVGKHEIEKIPDITTYGQPKYVFSDGIGKISADF 1888
            DFSQIKNVAKYAARLGQSFGSS ETLSV +HEIE IPD+  +G   YVFSDGIGKIS DF
Sbjct: 477  DFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGT-SYVFSDGIGKISGDF 535

Query: 1887 AHRVAIKCGLKSFTPSAFQIRYAGYKGVVAVDPCSSVKLSLRKSMRKYKSKNTKLDVLAW 1708
            AHRVA KCGL+ +TPSAFQIRY GYKGVV VDP SS+KLSLRKSM KY+S N KLDVL W
Sbjct: 536  AHRVASKCGLQ-YTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGW 594

Query: 1707 SKYQPCYLNRQIITLLSTLGIPDDAFLKKQRNAVAQLDSILTDPSRAQDALELMSPGEST 1528
            SKYQPCYLNRQ+ITLLSTLG+ D+   +KQ+ AV QLD+IL D  +AQ+ALELMSPGE+T
Sbjct: 595  SKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654

Query: 1527 NILKEMLKCGYKPDAEPFLSMMLQAFRSSKLLDLRTKARIFIPDGRSMIGCLDETGTLEY 1348
            NILK ML CGYKPDAEPFLSMMLQ FR+SKLLDLRT++RIFIP+GR+M+GCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEY 714

Query: 1347 GEVFVQFASAASRQFYDNSLAFGDSSSRGRCSIHVGRVVVAKNPCLHPGDVRVLKAVNVA 1168
            G+VFVQF  A   +F D+   F +S S     I  G VVVAKNPCLHPGD+RVLKAVNV 
Sbjct: 715  GQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVR 774

Query: 1167 ALHHMVDCVVFPQNGMRPHPNECSGSDLDGDVYFVSWDRDLIPSKQISPMDYTAAPTIEL 988
            ALHHMVDCVVFPQ G RPHPNECSGSDLDGD+YFV WD+D+IP +Q+ PM+Y  AP+I+L
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 834

Query: 987  DHDVTIEEVQEYFTNYIVNDSLGIIANAHTVFADRELLRAMSQPCIELAQLFSTAVDFPK 808
            DHDVTIEEV+EYFTNYIVNDSLGIIANAH VFADRE   AMS PC +LA+LFS AVDFPK
Sbjct: 835  DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894

Query: 807  TGVPAVIPPDLRVKVYPDFMEKSDKTTYESQSVIGKLFREVKKISP-VESIEAFTREVAR 631
            TGVPA IP  LR K YPDFM+K DKT+Y S+ VIGKLFR+VK  +P   SI  FTR+VAR
Sbjct: 895  TGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVAR 954

Query: 630  KSYDHDMEVEGFEQYIDEAFEFKMEYDYKLGNLMDYYGIKTEAEILSGGILKMSKSFDRR 451
            +SYD DMEV+GFE YIDEAF++K EYD KLGNLMDYYGIKTEAEILSGGI+K SK+FDRR
Sbjct: 955  RSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1014

Query: 450  KDAEAVSFAMRSLRKEARSWFSKKGSEPDDDPYAKASAWYHVTYHHSYWGSYDEGTDRAH 271
            KDAEA+S A+R+LRKEAR+WF ++     DD   KASAWYHVTYH +YWG Y++G  RAH
Sbjct: 1015 KDAEAISVAVRALRKEARAWFKRRND--IDDMLPKASAWYHVTYHPTYWGCYNQGLKRAH 1072

Query: 270  FISFPWCVYDKLIHIKRNRSNRIP 199
            FISFPWCVYD+LI IK++++   P
Sbjct: 1073 FISFPWCVYDQLIQIKKDKARNRP 1096


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score = 1430 bits (3702), Expect = 0.0
 Identities = 719/1105 (65%), Positives = 861/1105 (77%), Gaps = 9/1105 (0%)
 Frame = -2

Query: 3486 MGRTIQVSSFPYLIPAETVKAFLEEYTGRGTVCALEVRTCKGGQRAYARVQFINDQSAAL 3307
            MG+TIQV  FP L+ AE VK FLE++TG GT+CALEV+  KGG RA+A+VQF+++ SA  
Sbjct: 1    MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3306 IVFLAKQRLYYGSTYLKAWECDIDMTSKPKTYVNEMDKLNLSFGCQISHDKFSVLWKQTG 3127
            I+ LA +RLY+GS+YLKAWE   D+    + YV+ MD + L+FGCQIS DKF+VL   T 
Sbjct: 61   IINLASKRLYFGSSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISEDKFAVLGS-TE 118

Query: 3126 VSVXXXXXXXXXXXXXXFNSVEYKLELRYQNIWQITLHRPSNRATNYLLIQLFGAPRIHQ 2947
            VS+                S +YKL+L Y+NIWQ+ LHRP  +   +LLIQLFGAPRI++
Sbjct: 119  VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178

Query: 2946 KQVDSIYSFFKEVQDDQWVRATDFTPSFCIGLASGICLQLPLGVQIPNFREYLVYYKESD 2767
            +  +S YSFFKE  DDQWVR TDFTPS+ IGL+S +CLQ   GV +PNF+E   +Y E +
Sbjct: 179  RLENSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237

Query: 2766 TPFIMENGSPY--CSNKMLVPIIQSPQLFKLPFEVLFKICTLVQTGCLPGPKVDANFFQL 2593
                ++ G  +       LVP +Q P+   +P+++LFKI +LVQ GC+PGP ++  FF+L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297

Query: 2592 CFPWNINEVSIIERVLEDMYYVKECCYEPTRWIKERFEKYRMLGKLPKSPAVVLDDGLVY 2413
              P   N V+ IE+ LE +YY+KECCY+P RW+ E+++ Y    + PKSP++ LDDGLVY
Sbjct: 298  VDPQRRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356

Query: 2412 VRRVQVTPCKVYFSGPEVNMSNRVLRNYPNDLDNFLRISFVDEEWEKMYSADLSLRGS-- 2239
            VRRV VTPCKVYF GPEVN+SNRVLRNY  D+DNFLR+SFVDEEWEK+YS +L  + S  
Sbjct: 357  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 416

Query: 2238 ---KTELYYRILLTLKNGITIGDKKFEFLAFSSSQLRDNSAWMFASRPGLTAADIRMWMG 2068
               +T +Y RIL TL+ G  IGDKKFEFLAFSSSQLRDNS WMFASR GLT  DIR WMG
Sbjct: 417  NGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMG 476

Query: 2067 DFSQIKNVAKYAARLGQSFGSSTETLSVGKHEIEKIPDITTYGQPKYVFSDGIGKISADF 1888
            DFSQIKNVAKYAARLGQSFGSS ETLSV +HEIE IPD+  +G   YVFSDGIGKISADF
Sbjct: 477  DFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGT-SYVFSDGIGKISADF 535

Query: 1887 AHRVAIKCGLKSFTPSAFQIRYAGYKGVVAVDPCSSVKLSLRKSMRKYKSKNTKLDVLAW 1708
            A RVA KCGL+ +TPSAFQIRY GYKGVVAVDP SS+KLSLRKSM KY+S N KLDVL W
Sbjct: 536  ARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594

Query: 1707 SKYQPCYLNRQIITLLSTLGIPDDAFLKKQRNAVAQLDSILTDPSRAQDALELMSPGEST 1528
            SKYQPCYLNRQ++TLLSTLG+ DD   +KQ+ AV QLD+IL D  +AQ+ALELMSPGE+T
Sbjct: 595  SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENT 654

Query: 1527 NILKEMLKCGYKPDAEPFLSMMLQAFRSSKLLDLRTKARIFIPDGRSMIGCLDETGTLEY 1348
            NILK ML CGY PDAEPFLSMMLQ FR+SKLLDLRT++RIFIP+GR+M+GCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714

Query: 1347 GEVFVQFASAASRQFYDNSLAFGDSSSRGRCSIHVGRVVVAKNPCLHPGDVRVLKAVNVA 1168
            G+VFVQF  A  R+F ++   F +S S     I  G VVVAKNPCLHPGD+RVL+AV+V 
Sbjct: 715  GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774

Query: 1167 ALHHMVDCVVFPQNGMRPHPNECSGSDLDGDVYFVSWDRDLIPSKQISPMDYTAAPTIEL 988
            ALHHMVDCVVFPQ G RPHPNECSGSDLDGD+YFV WD+D+IP +Q+  M+Y  AP+I+L
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834

Query: 987  DHDVTIEEVQEYFTNYIVNDSLGIIANAHTVFADRELLRAMSQPCIELAQLFSTAVDFPK 808
            DH+VTIEEV+EYFTNYIVNDSLGIIANAH VFADRE   AMS PC +LA+LFS AVDFPK
Sbjct: 835  DHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894

Query: 807  TGVPAVIPPDLRVKVYPDFMEK-SDKTTYESQSVIGKLFREVKKISP-VESIEAFTREVA 634
            TGVPA IP  LR K YPDFM+K  DKTTY S+ VIGKLFR+VK  +P   SI  FTR+VA
Sbjct: 895  TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVA 954

Query: 633  RKSYDHDMEVEGFEQYIDEAFEFKMEYDYKLGNLMDYYGIKTEAEILSGGILKMSKSFDR 454
            R+SYD D+EV+GFE YIDEAF++K EYD KLGNLMDYYGIKTEAEILSGGI+K SK+FDR
Sbjct: 955  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1014

Query: 453  RKDAEAVSFAMRSLRKEARSWFSKKGSEPDDDPYAKASAWYHVTYHHSYWGSYDEGTDRA 274
            RKDAEA+S A+R+LRKEAR+WF ++     DD   KASAWYHVTYH +YWG Y++G  R 
Sbjct: 1015 RKDAEAISVAVRALRKEARTWFKRRND--IDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072

Query: 273  HFISFPWCVYDKLIHIKRNRSNRIP 199
            HFISFPWCVYD+LI IK+ ++   P
Sbjct: 1073 HFISFPWCVYDQLIQIKKEKARNRP 1097