BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00008912
         (1165 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig ...   338   2e-90
pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regul...   332   8e-89
ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253...   330   5e-88
ref|NP_172893.1| ssDNA-binding transcriptional regulator [Arabid...   318   2e-84
ref|XP_002892804.1| ATWHY1/PTAC1 [Arabidopsis lyrata subsp. lyra...   318   2e-84

>sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY1,
           chloroplastic; AltName: Full=DNA-binding protein p24;
           AltName: Full=PR-10a binding factor 2; Short=PBF-2;
           AltName: Full=Protein WHIRLY 1; Short=StWhy1; Flags:
           Precursor gi|9651810|gb|AAF91282.1|AF233342_1
           DNA-binding protein p24 [Solanum tuberosum]
          Length = 274

 Score =  338 bits (867), Expect = 2e-90
 Identities = 173/258 (67%), Positives = 202/258 (78%), Gaps = 12/258 (4%)
 Frame = +1

Query: 178 QNPCVPSKTSFLPNPTTLKIPQ-----------TKFAKVNLSFKVKC-NSDYFGHDQHQQ 321
           QNP   S  SF  +  T+  P            T  A +  +  + C +SDYF   Q QQ
Sbjct: 19  QNPTKTSYLSFSSSINTIFAPLSSNTTKSFSGLTHKAALPRNLSLTCRHSDYFEPQQQQQ 78

Query: 322 TRFLPPESSQTGPTRVFVGYTIYKGKAALTVEPRAPEFTPLDSGAYKLSKEGFVLLQFAP 501
            +   P+ + T   +VFVGY+IYKGKAALTVEPR+PEF+PLDSGA+KLS+EG V+LQFAP
Sbjct: 79  QQQQQPQGAST--PKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAP 136

Query: 502 AAGVRQYDWMRKQVFSLSVSEMGNLISLGARDSCEFFHDPFKGKSDEGRVRKVLKVEPLP 681
           AAGVRQYDW RKQVFSLSV+E+G++ISLGA+DSCEFFHDP KG+SDEGRVRKVLKVEPLP
Sbjct: 137 AAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLP 196

Query: 682 DGSGHFFNLSVQNKLTNVDESIYIPVTKAEFTVLMSAFNFIVPYLLGWHTFANTMKLEDA 861
           DGSGHFFNLSVQNKL N+DE+IYIPVTKAEF VL+SAFNF++PYLLGWHT  N+ K EDA
Sbjct: 197 DGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPEDA 256

Query: 862 SRVNNVNPRTGAELEWNR 915
           SR NN NPR+GAELEWNR
Sbjct: 257 SRSNNANPRSGAELEWNR 274


>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
           gi|157878743|pdb|1L3A|B Chain B, Structure Of The Plant
           Transcriptional Regulator Pbf-2 gi|157878744|pdb|1L3A|C
           Chain C, Structure Of The Plant Transcriptional
           Regulator Pbf-2 gi|157878745|pdb|1L3A|D Chain D,
           Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 227

 Score =  332 bits (852), Expect = 8e-89
 Identities = 160/208 (76%), Positives = 183/208 (87%)
 Frame = +1

Query: 289 SDYFGHDQHQQTRFLPPESSQTGPTRVFVGYTIYKGKAALTVEPRAPEFTPLDSGAYKLS 468
           SDYF   Q QQ +   P+ + T   +VFVGY+IYKGKAALTVEPR+PEF+PLDSGA+KLS
Sbjct: 14  SDYFEPQQQQQQQQQQPQGAST--PKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLS 71

Query: 469 KEGFVLLQFAPAAGVRQYDWMRKQVFSLSVSEMGNLISLGARDSCEFFHDPFKGKSDEGR 648
           +EG V+LQFAPAAGVRQYDW RKQVFSLSV+E+G++ISLG +DSCEFFHDP KG+SDEGR
Sbjct: 72  REGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGR 131

Query: 649 VRKVLKVEPLPDGSGHFFNLSVQNKLTNVDESIYIPVTKAEFTVLMSAFNFIVPYLLGWH 828
           VRKVLKVEPLPDGSGHFFNLSVQNKL N+DE+IYIPVTKAEF VL+SAFNF++PYLLGWH
Sbjct: 132 VRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWH 191

Query: 829 TFANTMKLEDASRVNNVNPRTGAELEWN 912
           T  N+ K EDASR NN NPR+GAELEWN
Sbjct: 192 TAVNSFKPEDASRSNNANPRSGAELEWN 219


>ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253653 [Vitis vinifera]
           gi|296086421|emb|CBI32010.3| unnamed protein product
           [Vitis vinifera]
          Length = 268

 Score =  330 bits (845), Expect = 5e-88
 Identities = 167/234 (71%), Positives = 195/234 (83%), Gaps = 3/234 (1%)
 Frame = +1

Query: 223 TTLKIPQTKFAKVNLSFKVKCNSDYFGHDQHQQTRFLPPESSQTGPT---RVFVGYTIYK 393
           T L +  T+  +   S + +  SDYF   Q   TR  PP  S  G     RVFVG++IYK
Sbjct: 39  TPLLLSTTRHFRKKRSLQCR-QSDYF--QQQNITRRQPPNDSSFGGALQPRVFVGHSIYK 95

Query: 394 GKAALTVEPRAPEFTPLDSGAYKLSKEGFVLLQFAPAAGVRQYDWMRKQVFSLSVSEMGN 573
           GKAALTVEP+APEFTPLDSGA+K+SKEGFVLLQFAPAAGVRQYDW RKQVFSLSV+E+G+
Sbjct: 96  GKAALTVEPKAPEFTPLDSGAFKVSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGS 155

Query: 574 LISLGARDSCEFFHDPFKGKSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLTNVDESIYI 753
           LISLGAR+SCEFFHDPFKG+S+EG+VRKVLKVEPLPDGSGHFFNLSVQNKL N+DE+IYI
Sbjct: 156 LISLGARESCEFFHDPFKGRSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNMDENIYI 215

Query: 754 PVTKAEFTVLMSAFNFIVPYLLGWHTFANTMKLEDASRVNNVNPRTGAELEWNR 915
           PVT+AEF VL+SAFNFIVPYLLGWH +AN++K +D SRVNN NPR+G + EW+R
Sbjct: 216 PVTRAEFAVLISAFNFIVPYLLGWHAYANSIKPDDTSRVNNANPRSG-DFEWSR 268


>ref|NP_172893.1| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
           gi|75191428|sp|Q9M9S3.1|WHY1_ARATH RecName:
           Full=Single-stranded DNA-binding protein WHY1,
           chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 1; AltName: Full=Protein WHIRLY
           1; Short=AtWHY1; Flags: Precursor
           gi|7262683|gb|AAF43941.1|AC012188_18 Contains similarity
           to a hypothetical protein from Arabidopsis thaliana
           gb|AC002521.2. EST gb|AI995686 comes from this gene
           [Arabidopsis thaliana]
           gi|12083312|gb|AAG48815.1|AF332452_1 putative
           DNA-binding protein p24 [Arabidopsis thaliana]
           gi|13877787|gb|AAK43971.1|AF370156_1 putative
           DNA-binding protein p24 [Arabidopsis thaliana]
           gi|16323418|gb|AAL15203.1| putative DNA-binding protein
           p24 [Arabidopsis thaliana] gi|332191039|gb|AEE29160.1|
           ssDNA-binding transcriptional regulator [Arabidopsis
           thaliana]
          Length = 263

 Score =  318 bits (815), Expect = 2e-84
 Identities = 153/226 (67%), Positives = 182/226 (80%)
 Frame = +1

Query: 238 PQTKFAKVNLSFKVKCNSDYFGHDQHQQTRFLPPESSQTGPTRVFVGYTIYKGKAALTVE 417
           P TK  K+   F VK     +   Q        P  ++  P R +VG++IYKGKAALTV+
Sbjct: 41  PTTKTVKL---FSVKSRQTDYFEKQRFGDSSSSPSPAEGLPARFYVGHSIYKGKAALTVD 97

Query: 418 PRAPEFTPLDSGAYKLSKEGFVLLQFAPAAGVRQYDWMRKQVFSLSVSEMGNLISLGARD 597
           PRAPEF  LDSGA+KLSK+GF+LLQFAP+AGVRQYDW +KQVFSLSV+E+G L+SLG R+
Sbjct: 98  PRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRE 157

Query: 598 SCEFFHDPFKGKSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLTNVDESIYIPVTKAEFT 777
           SCEFFHDPFKGKSDEG+VRKVLKVEPLPDGSGHFFNLSVQNKL NVDESIYIP+T+AEF 
Sbjct: 158 SCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFA 217

Query: 778 VLMSAFNFIVPYLLGWHTFANTMKLEDASRVNNVNPRTGAELEWNR 915
           VL+SAFNF++PYL+GWH FAN++K E+ SRVNN +P  G + EWNR
Sbjct: 218 VLISAFNFVLPYLIGWHAFANSIKPEETSRVNNASPNYGGDYEWNR 263


>ref|XP_002892804.1| ATWHY1/PTAC1 [Arabidopsis lyrata subsp. lyrata]
           gi|297338646|gb|EFH69063.1| ATWHY1/PTAC1 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 264

 Score =  318 bits (815), Expect = 2e-84
 Identities = 153/227 (67%), Positives = 185/227 (81%), Gaps = 1/227 (0%)
 Frame = +1

Query: 238 PQTKFAKVNLSFKVKCN-SDYFGHDQHQQTRFLPPESSQTGPTRVFVGYTIYKGKAALTV 414
           P TK  K+   F VK   +DYF   +   +     ++++  P R +VG++IYKGKAALT+
Sbjct: 41  PTTKTVKL---FSVKSRQTDYFEKQRFGDSSSSSSQNAEGLPARFYVGHSIYKGKAALTM 97

Query: 415 EPRAPEFTPLDSGAYKLSKEGFVLLQFAPAAGVRQYDWMRKQVFSLSVSEMGNLISLGAR 594
           EPRAPEF  LDSGA+KLSK+GF+LLQFAP+AGVRQYDW +KQVFSLSV+E+G L+SLG R
Sbjct: 98  EPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPR 157

Query: 595 DSCEFFHDPFKGKSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLTNVDESIYIPVTKAEF 774
           +SCEFFHDPFKGKSDEG+VRKVLKVEPLPDGSGHFFNLSVQNKL NVDESIYIP+T+AEF
Sbjct: 158 ESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEF 217

Query: 775 TVLMSAFNFIVPYLLGWHTFANTMKLEDASRVNNVNPRTGAELEWNR 915
            VL+SAFNF++PYL+GWH FAN++K ED +R NN  P  G + EWNR
Sbjct: 218 AVLISAFNFVLPYLIGWHAFANSIKPEDTNRANNAPPNYGGDYEWNR 264