BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00008676
         (1455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   135   7e-32
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   137   7e-32
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...   127   4e-30
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   122   4e-29
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   126   2e-28

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  135 bits (341), Expect(2) = 7e-32
 Identities = 100/334 (29%), Positives = 150/334 (44%), Gaps = 39/334 (11%)
 Frame = +3

Query: 189  GAAVVKRLSYVGKVEL------GIQLFWASCLLVPKGVWEDIDTRLNKFLWRNVEADRFK 350
            G+   + LSY G++ L       I  FW +   +P+    +++   + FLW   E +  K
Sbjct: 798  GSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNK 857

Query: 351  AKVKWRNVCKSKNEVGLGLKDLH----------VWNKAFTIQKKDNLWVKWIYAVKLKSC 500
            AK+ W  VCK K+E GLGL+ L           VW     +   ++LWVKW+    L++ 
Sbjct: 858  AKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWK---IVSHSNSLWVKWVDQHLLRNA 914

Query: 501  SEWGYKVRYGD-SWVWKKLLKYRGWLGEHVRVEVGDGASVYAWTDPWFH-GKSLQGLPGN 674
            S W  K      SW+WKKLLKYR       +VEVG+G     W D W   G+ L+     
Sbjct: 915  SFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDR 974

Query: 675  VQKLLVQDRTITVADMMNQNRPWRWPIGRRFKGEVEGFREEFYRVM--GQCNREDQTVWI 848
                L   R +TV +     R       RR + +V    E+  +     +   ED+ +W 
Sbjct: 975  GLIDLGISRRMTVEEAWTNRRQ------RRHRNDVYNVIEDALKKSWDTRTETEDKVLWR 1028

Query: 849  HGTN---TSLKTKD----*MG*AGLA*WN--------VPRQSFITWLL---RLETNDRVV 974
              ++   T+  T+D        +    W+         P+ SF +WL    RL T DR++
Sbjct: 1029 GKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMI 1088

Query: 975  KWKPGIDEGCLLCTGK-ESRQHLFFHCAFAGMVW 1073
             W  GI   C+ C G  E+R HLFF C+F  ++W
Sbjct: 1089 NWANGIATDCIFCQGTLETRDHLFFTCSFTSVIW 1122



 Score = 29.3 bits (64), Expect(2) = 7e-32
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1165 RVALCSTVYWVWYERNSRLHGRKRNDE*WVVEKVVQDVCERLRN-CRGLWQKSRDRWELA 1341
            R    +T+Y VW ERN R HG   N       ++V  + +++RN    +  K   R++ +
Sbjct: 1159 RYVFQATIYIVWRERNGRRHGEPPN----TASQLVGWIDKQIRNQLSSICLKGDKRYDGS 1214

Query: 1342 LQ 1347
            LQ
Sbjct: 1215 LQ 1216


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  137 bits (344), Expect(2) = 7e-32
 Identities = 102/326 (31%), Positives = 141/326 (43%), Gaps = 31/326 (9%)
 Frame = +3

Query: 207  RLSYVGKVELGIQLFWASCLLVPKGVWEDIDTRLNKFLWRNVEADRFKAKVKWRNVCKSK 386
            RL+ +  V      FW S   +P    ++I++  + FLW   E  R KAKV W ++CK K
Sbjct: 215  RLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPK 274

Query: 387  NEVGLGLKDLHVWNKAFTIQ-------KKDNLWVKWIYAVKLKSCSEWGYKVRYG-DSWV 542
             E GLGL+ L   N    ++         D+LWVKW     LK  S W         SW+
Sbjct: 275  QEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWM 334

Query: 543  WKKLLKYRGWLGEHVRVEVGDGASVYAWTDPWF---HGKSLQGLPGNVQKLLVQDRTITV 713
            WKK+LKYR       RVEV +GA    W D W    H   + G  G +   + +++T+  
Sbjct: 335  WKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAE 394

Query: 714  ADMMNQNRPWRWPIGRRFKGEVEGFREEFYRVMGQCNREDQTVWIHGT----NTSLKTKD 881
            A    + R  R         ++E    + Y+      RED T+W  G      TS  TKD
Sbjct: 395  AWSNRRRRKHR----TEQLNDIEAALNQKYQTRNLL-REDATLW-RGKGDVFKTSFSTKD 448

Query: 882  *MG----*AGLA*W--------NVPRQSFITWLL---RLETNDRVVKWKPGIDEGCLLC- 1013
                    +    W        + P+  F TWL    RL T  R+  W  G D  C  C 
Sbjct: 449  TWNQVRKKSNEVAWYKGVWFSHSTPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCS 508

Query: 1014 TGKESRQHLFFHCAFAGMVWRKVQAN 1091
            T  E+R HLFF C++A  +W  +  N
Sbjct: 509  TSIETRDHLFFSCSYASAIWTAIAKN 534



 Score = 28.1 bits (61), Expect(2) = 7e-32
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 1144 KLRQVVLRVALCSTVYWVWYERNSRLHGRK 1233
            ++R  + R     TV+ VW ERN R HG +
Sbjct: 558  RIRSFLSRYIFQLTVHTVWKERNDRRHGEE 587


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  127 bits (319), Expect(2) = 4e-30
 Identities = 99/329 (30%), Positives = 146/329 (44%), Gaps = 39/329 (11%)
 Frame = +3

Query: 204  KRLSYVGKVEL------GIQLFWASCLLVPKGVWEDIDTRLNKFLWRNVEADRFKAKVKW 365
            + LS+ G+++L       +  FW S   +P    ++ID   + FLW   E +R KAKV W
Sbjct: 23   RHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIKEIDGLCSAFLWSGPELNRKKAKVSW 82

Query: 366  RNVCKSKNEVGLGLKDLHVWNKA------FTIQKKDNLWVKWIYAVKLKSCSEWGYK-VR 524
             +VC  K E GLGL+ L   NK       + +    +LWV+W+    ++  S W  +   
Sbjct: 83   NDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLSSSSLWVQWLRQYVIRKGSFWSLRDTS 142

Query: 525  YGDSWVWKKLLKYRGWLGEHVRVEVGDGASVYAWTDPWFHGKSLQGLPGNVQKL-LVQDR 701
               SW+W+KLLKYR       + E+ +G  V  W D W     L  + G    + +  D 
Sbjct: 143  TLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWSPLGPLIAISGTRGCIDMGIDI 202

Query: 702  TITVADMMNQNRPWRWPIGRRFK----GEVEGFREEFYRVMGQCNREDQTVWI---HGTN 860
              TVA+ +   R       RR +     ++E   EE  R  G    ED  +W        
Sbjct: 203  HATVAEALTHRR-------RRHRADHLNQMEAQLEEL-RTKGLVETEDVVLWKGKGGRFK 254

Query: 861  TSLKTKD*MG*A-----------GLA*W---NVPRQSFITWLL---RLETNDRVVKWKPG 989
             S  TK+                G+  W     P+ SFITWL    RL T DR++ W  G
Sbjct: 255  PSFSTKETWADTREQKPRNEWYQGI--WFSHATPKYSFITWLATKNRLSTGDRMMSWNAG 312

Query: 990  IDEGCLLCTGK-ESRQHLFFHCAFAGMVW 1073
            ++  C+ C  + E+R HLFF C ++  VW
Sbjct: 313  VNLSCVFCQEQTETRNHLFFTCRYSREVW 341



 Score = 32.0 bits (71), Expect(2) = 4e-30
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 1150 RQVVLRVALCSTVYWVWYERNSRLHGRKRNDE*WVVEKVVQDVCERLRNCR 1302
            R  +LR A    VY +W ERNSR HG +      +++++ ++V  +L   R
Sbjct: 373  RLFLLRYAFQILVYSIWKERNSRRHGEEPLPSALLLKRLDKEVRNKLSTIR 423


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score =  122 bits (305), Expect(2) = 4e-29
 Identities = 90/325 (27%), Positives = 136/325 (41%), Gaps = 35/325 (10%)
 Frame = +3

Query: 204  KRLSYVGKVEL------GIQLFWASCLLVPKGVWEDIDTRLNKFLWRNVEADRFKAKVKW 365
            + LSY G+V+L       IQ++WAS  L+P  V ++++  +  FLW   +     AKV W
Sbjct: 90   RTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAW 149

Query: 366  RNVCKSKNEVGLGLKDLHVWNKAFTIQKKDNL--------WVKWIYAVKLKSCSEWGYKV 521
              VC  K E GLG+K +  WNK   ++   NL        W  WI +  L+  + W  K 
Sbjct: 150  DQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKT 209

Query: 522  RYGDSWVWKKLLKYRGWLGEHVRVEVGDGASVYAWTDPWFHGKSLQGLPGNVQKLLVQDR 701
                SW W K+LK R      ++  +GDG +   W D W     L    G   +  + D 
Sbjct: 210  PQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYG---ERFIYDS 266

Query: 702  TITVADMMN---QNRPWRWPIGRRFKGE--VEGFREEFYRVMGQCNREDQTVWIHGTNTS 866
             +     +N   QN  W+ P  +       +E         MGQ   +D+ VW+   N  
Sbjct: 267  GMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQ---KDELVWLDSPNHR 323

Query: 867  LKTK----D*MG*AGLA*WN--------VPRQSFITWLL---RLETNDRVVKWKPGIDEG 1001
               K           +  W+        VPR SF+ W+    +L T D++ ++       
Sbjct: 324  FSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNR 383

Query: 1002 CLLC-TGKESRQHLFFHCAFAGMVW 1073
            C LC    E   HLFF C++   +W
Sbjct: 384  CSLCLRNNEDHNHLFFECSYTKAIW 408



 Score = 33.9 bits (76), Expect(2) = 4e-29
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +1

Query: 1084 RPTRGWDWELE*CMKQAIGPKLRQVVLRVALCSTVYWVWYERNSRLH---GRKRNDE*WV 1254
            R T+GWD  +        G        +++  +TVY VW ERN+R+     R  N     
Sbjct: 419  RMTKGWDEWIRWATVSWHGKSFVNFSCKLSFAATVYHVWQERNARIFAGMSRTPNLVLNQ 478

Query: 1255 VEKVVQDVCERLRN 1296
            +E +++D  + +RN
Sbjct: 479  IECIIRDKLDLMRN 492


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  126 bits (316), Expect(2) = 2e-28
 Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 34/332 (10%)
 Frame = +3

Query: 204  KRLSYVGKVELGIQL------FWASCLLVPKGVWEDIDTRLNKFLWRNVEADRFKAKVKW 365
            K LS+ G+++L   +      FW S  ++PK   + I+   N+FLW N    R   KV W
Sbjct: 795  KTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSW 854

Query: 366  RNVCKSKNEVGLGLKDLHVWNKAFTIQ-------KKDNLWVKWIYAVKLKSCSEWGYKVR 524
            +N C  K E GLGL++   WNK   ++       ++D+LWV W +A +L+  + W  +  
Sbjct: 855  QNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAA 914

Query: 525  YGDSWVWKKLLKYRGWLGEHVRVEVGDGASVYAWTDPWFH-GKSLQGLPGNVQKLLVQDR 701
               SW+WK +L  R      +R  VG+G  +  W D W + G  ++ +  +  +L     
Sbjct: 915  SHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHE 974

Query: 702  TITVADMMNQNRPWRWPIGRRFKGEVEGFREEFYR---VMGQCNREDQTVWIHGTNTS-- 866
            +  V +  + +  W  P  R     +   R          G    +  T +I G++++  
Sbjct: 975  SAVVTE-ASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSF 1033

Query: 867  --------LKTKD*MG*AGLA*WN---VPRQSFITW---LLRLETNDRVVKWKPGIDEGC 1004
                    L+ +D       A W    +P+ +F  W   L RL    R   W       C
Sbjct: 1034 SSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLC 1093

Query: 1005 LLCTGK-ESRQHLFFHCAFAGMVWRKVQAN*G 1097
             +C  + E+R HLF HC    ++W++V A  G
Sbjct: 1094 CVCQRETETRDHLFIHCTLGSLIWQQVLARFG 1125



 Score = 27.3 bits (59), Expect(2) = 2e-28
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 1165 RVALCSTVYWVWYERNSRLH 1224
            ++A+ + ++ +W ERNSRLH
Sbjct: 1153 KLAVQTAIFHIWKERNSRLH 1172