BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00008498
         (3921 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1774   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1761   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1702   0.0  
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...  1685   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1682   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1774 bits (4594), Expect = 0.0
 Identities = 848/1167 (72%), Positives = 999/1167 (85%), Gaps = 9/1167 (0%)
 Frame = -1

Query: 3663 LQGLNEKSLQAFCKKASTAFFEQYGLISHQINSYNDFIKYGIQKVFDSIEEILVEPGFDP 3484
            +  LN++ L+ FCKK + +FF +YGLI HQINS+NDFIK GIQ+VFDS  EI VEPG+DP
Sbjct: 38   IDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDP 97

Query: 3483 SKRGDGDWRYASVKFLKVKLDKPNHWTGEKFSAENSKEYLDLLPRHARLQNMTYSARMIV 3304
            SKRG+GDWRYASV+F KV L++P  W GE     + KE L+ LPRHARLQNMTYS+RM  
Sbjct: 98   SKRGEGDWRYASVRFGKVTLERPRVWAGES----DGKESLNFLPRHARLQNMTYSSRMKA 153

Query: 3303 ETRLQVYTKRPIRSDKLKTGKDNLMIDKEIESDETREVFIGRIPVMVKSDLCWMNQLEKA 3124
            +   QVYT++ +RSDK KTGKDN  ++K++  ++ R++ IGRIPVMVKS+LCWMN +E+ 
Sbjct: 154  QVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERG 213

Query: 3123 DCDFEHGGYFIVKGAEKTFIAQEHICLKRLWVDSTPNWMVSYRSVSRKKRVYIKLLETAK 2944
            DC+++HGGYF++KGAEKTFIAQE ICLKRLWV S P WMV+YR + ++KRVY+KL E  K
Sbjct: 214  DCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPK 272

Query: 2943 FEQISGGEKYLSVYFFVLEMPIWILFFALGVTSDKEVINLIEADVNDSRIANILMSSIHE 2764
             E   GGEK L+VYF   E+PIWILFFALG +SDKEV++LI+ +++D+ I+NIL++SIHE
Sbjct: 273  DENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHE 332

Query: 2763 ADDKCED----FRKGNNAISFIERHFKNCRFPPTETVEDCFFKYLFPSLPGFKQKARFLG 2596
            AD + E     FR+  NAISF+++  K+C+FPP E++++C  KYLFP+  G KQKARFLG
Sbjct: 333  ADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLG 392

Query: 2595 YMVKCLLQGYTGHRKVDNRDDFRNKXXXXXXXXXXXXXRVHIKHAEKRMVKSLQRDLYGI 2416
            YMVKCLLQ YTG RK DNRDDFRNK             RVHI+HAE+RMVK++QR+LYG 
Sbjct: 393  YMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGD 452

Query: 2415 RTVQPIEHYLDASIVTNGLCRAFSTGAWCHPYKRMERISGIVATLRRTNPLQMTSDMRKT 2236
            R ++PIE+YLDASI+TNGL RAFSTG W HP+KRMERISG+VATLRRTNPLQMT+DMRKT
Sbjct: 453  RDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKT 512

Query: 2235 RQQVSYTGKVGDARYPHPSHWGRICFLSTSDGENCGLVKNLASLGLVSTDMQEDIQDKLL 2056
            RQQV YTGKVGDARYPHPSHWG++CFLST DGENCGLVKNLA  GLVST++ + + DKL 
Sbjct: 513  RQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLF 572

Query: 2055 ECGMEKLINDSSTVLHGKHKIFMDGDWVGICEDSASFVAELRHKRRSRKVPQQVEIKRDE 1876
            +CGMEKL++D+ST L GK+K+F+DGDWVG+CED  SFV ELR KRR +++PQQVEIKRDE
Sbjct: 573  DCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDE 632

Query: 1875 QQREVRIFTDAGRILRPLLVVKNLGKVEAFKGGSFSFQSLLDRGVIELIGPEEEEDIKAA 1696
            QQ EVRIF+DAGRILRPLLVV+NL KV+ FKG  F+FQSLLD+G++ELIG EEEED   A
Sbjct: 633  QQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTA 692

Query: 1695 WGVKYLLGASEEDPPARYTHVELDMSFLLGLSCGLIPFANHDHAKRVLYQSEKHSQQAMG 1516
            WG+KYLL    +DPP +YTH ELDMSFLLGLSCG+IP+ANHDHA+RVLYQSEKHSQQA+G
Sbjct: 693  WGIKYLL-KGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIG 751

Query: 1515 FGTTNPEIRVDTNTHQLFYPQRPLFRTMLSDCLGK-----SRAGVLPRPEYYNGQCAIVA 1351
            F TTNP IRVDT +HQL+YPQRPLFRTM+SDCLGK        G++PRPEY+NGQ AIVA
Sbjct: 752  FSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVA 811

Query: 1350 VNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKSEIENNEGAGKKLKPEDIVNFGKTQS 1171
            VNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKSE++NNE   KK K ED V+FGK QS
Sbjct: 812  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQS 871

Query: 1170 KIGRVDSLDDDGFPFIGANLQSGDIVIGKYSESGVDHSVKLKHTERGMVQKVVLSANDDG 991
            KIGRVDSLDDDGFPFIGANLQ+GDIVIG+ +ESGVDHS+KLKHTERGMVQKVV+SANDDG
Sbjct: 872  KIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDG 931

Query: 990  KNFAVVSLRQIRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGVVPDIVINPHAFPSR 811
            KNFAVVSLRQ+R+PCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVINPHAFPSR
Sbjct: 932  KNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 991

Query: 810  QTPGQLLEAALGKGIALGGSLKYATPFSTLTVEAITAQLHRLGFTRWGNEKVYNGRTGEM 631
            QTPGQLLEAALGKGIA GG L++ATPFSTL+V+AI  QLHR GF+RWG+E+VYNGRTGEM
Sbjct: 992  QTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEM 1051

Query: 630  VESLVFMGPTFYQRLTHMSEDKVKFRNTGPVHPFTRQPVADRKRFGGIKFGEMERDCLIA 451
            + SL+FMGPTFYQRL HM+EDKVKFRNTGPVHP TRQPV+DRKRFGGIKFGEMERDCLIA
Sbjct: 1052 LRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIA 1111

Query: 450  HGAASNLHERLFTLSDCSQMHICRKCKTMANVIQRPVLGGHKVRGPYCRFCESMEHIVRA 271
            HGAA+NLHERLFTLSD + MHICR+CK ++NVIQR V GG KVRGPYCR+CES E IV+ 
Sbjct: 1112 HGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKV 1171

Query: 270  NVPYGAKLLYQELFSMGITLKFDAEIC 190
            NVPYGAKLL QELFSMGI+LKF+ ++C
Sbjct: 1172 NVPYGAKLLCQELFSMGISLKFETQLC 1198


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1761 bits (4561), Expect = 0.0
 Identities = 844/1162 (72%), Positives = 993/1162 (85%), Gaps = 4/1162 (0%)
 Frame = -1

Query: 3663 LQGLNEKSLQAFCKKASTAFFEQYGLISHQINSYNDFIKYGIQKVFDSIEEILVEPGFDP 3484
            +  LN++ L+ FCKK + +FF +YGLI HQINS+NDFIK GIQ+VFDS  EI VEPG+DP
Sbjct: 74   IDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDP 133

Query: 3483 SKRGDGDWRYASVKFLKVKLDKPNHWTGEKFSAENSKEYLDLLPRHARLQNMTYSARMIV 3304
            SKRG+GDWRYASV+F KV L++P  W GE     + KE L+ LPRHARLQNMTYS+RM  
Sbjct: 134  SKRGEGDWRYASVRFGKVTLERPRVWAGES----DGKESLNFLPRHARLQNMTYSSRMKA 189

Query: 3303 ETRLQVYTKRPIRSDKLKTGKDNLMIDKEIESDETREVFIGRIPVMVKSDLCWMNQLEKA 3124
            +   QVYT++ +RSDK KTGKDN  ++K++  ++ R++ IGRIPVMVKS+LCWMN +E+ 
Sbjct: 190  QVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERG 249

Query: 3123 DCDFEHGGYFIVKGAEKTFIAQEHICLKRLWVDSTPNWMVSYRSVSRKKRVYIKLLETAK 2944
            DC+++HGGYF++KGAEKTFIAQE ICLKRLWV S P WMV+YR + ++KRVY+KL E  K
Sbjct: 250  DCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPK 308

Query: 2943 FEQISGGEKYLSVYFFVLEMPIWILFFALGVTSDKEVINLIEADVNDSRIANILMSSIHE 2764
             E   GGEK L+VYF   E+PIWILFFALG +SDKEV++LI+ +++D+ I+NIL++SIHE
Sbjct: 309  DENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHE 368

Query: 2763 ADDKCED----FRKGNNAISFIERHFKNCRFPPTETVEDCFFKYLFPSLPGFKQKARFLG 2596
            AD + E     FR+  NAISF+++  K+C+FPP E++++C  KYLFP+  G KQKARFLG
Sbjct: 369  ADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLG 428

Query: 2595 YMVKCLLQGYTGHRKVDNRDDFRNKXXXXXXXXXXXXXRVHIKHAEKRMVKSLQRDLYGI 2416
            YMVKCLLQ YTG RK DNRDDFRNK             RVHI+HAE+RMVK++QR+LYG 
Sbjct: 429  YMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGD 488

Query: 2415 RTVQPIEHYLDASIVTNGLCRAFSTGAWCHPYKRMERISGIVATLRRTNPLQMTSDMRKT 2236
            R ++PIE+YLDASI+TNGL RAFSTG W HP+KRMERISG+VATLRRTNPLQMT+DMRKT
Sbjct: 489  RDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKT 548

Query: 2235 RQQVSYTGKVGDARYPHPSHWGRICFLSTSDGENCGLVKNLASLGLVSTDMQEDIQDKLL 2056
            RQQV YTGKVGDARYPHPSHWG++CFLST DGENCGLVKNLA  GLVST++ + + DKL 
Sbjct: 549  RQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLF 608

Query: 2055 ECGMEKLINDSSTVLHGKHKIFMDGDWVGICEDSASFVAELRHKRRSRKVPQQVEIKRDE 1876
            +CGMEKL++D+ST L GK+K+F+DGDWVG+CED  SFV ELR KRR +++PQQVEIKRDE
Sbjct: 609  DCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDE 668

Query: 1875 QQREVRIFTDAGRILRPLLVVKNLGKVEAFKGGSFSFQSLLDRGVIELIGPEEEEDIKAA 1696
            QQ EVRIF+DAGRILRPLLVV+NL KV+ FKG  F+FQSLLD+G++ELIG EEEED   A
Sbjct: 669  QQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTA 728

Query: 1695 WGVKYLLGASEEDPPARYTHVELDMSFLLGLSCGLIPFANHDHAKRVLYQSEKHSQQAMG 1516
            WG+KYLL    +DPP +YTH ELDMSFLLGLSCG+IP+ANHDHA+RVLYQSEKHSQQA+G
Sbjct: 729  WGIKYLL-KGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIG 787

Query: 1515 FGTTNPEIRVDTNTHQLFYPQRPLFRTMLSDCLGKSRAGVLPRPEYYNGQCAIVAVNVHL 1336
            F TTNP IRVDT +HQL+YPQRPLFRTM+SD         LPRPEY+NGQ AIVAVNVHL
Sbjct: 788  FSTTNPNIRVDTLSHQLYYPQRPLFRTMISD---------LPRPEYFNGQIAIVAVNVHL 838

Query: 1335 GYNQEDSIVMNRASLERGMFRTEHIRSYKSEIENNEGAGKKLKPEDIVNFGKTQSKIGRV 1156
            GYNQEDS+VMNRASLERGMFR+EHIRSYKSE++NNE   KK K ED V+FGK QSKIGRV
Sbjct: 839  GYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRV 898

Query: 1155 DSLDDDGFPFIGANLQSGDIVIGKYSESGVDHSVKLKHTERGMVQKVVLSANDDGKNFAV 976
            DSLDDDGFPFIGANLQ+GDIVIG+ +ESGVDHS+KLKHTERGMVQKVV+SANDDGKNFAV
Sbjct: 899  DSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAV 958

Query: 975  VSLRQIRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGVVPDIVINPHAFPSRQTPGQ 796
            VSLRQ+R+PCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVINPHAFPSRQTPGQ
Sbjct: 959  VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 1018

Query: 795  LLEAALGKGIALGGSLKYATPFSTLTVEAITAQLHRLGFTRWGNEKVYNGRTGEMVESLV 616
            LLEAALGKGIA GG L++ATPFSTL+V+AI  QLHR GF+RWG+E+VYNGRTGEM+ SL+
Sbjct: 1019 LLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLI 1078

Query: 615  FMGPTFYQRLTHMSEDKVKFRNTGPVHPFTRQPVADRKRFGGIKFGEMERDCLIAHGAAS 436
            FMGPTFYQRL HM+EDKVKFRNTGPVHP TRQPV+DRKRFGGIKFGEMERDCLIAHGAA+
Sbjct: 1079 FMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAA 1138

Query: 435  NLHERLFTLSDCSQMHICRKCKTMANVIQRPVLGGHKVRGPYCRFCESMEHIVRANVPYG 256
            NLHERLFTLSD + MHICR+CK ++NVIQR V GG KVRGPYCR+CES E IV+ NVPYG
Sbjct: 1139 NLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYG 1198

Query: 255  AKLLYQELFSMGITLKFDAEIC 190
            AKLL QELFSMGI+LKF+ ++C
Sbjct: 1199 AKLLCQELFSMGISLKFETQLC 1220


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1702 bits (4407), Expect = 0.0
 Identities = 826/1125 (73%), Positives = 936/1125 (83%), Gaps = 17/1125 (1%)
 Frame = -1

Query: 3780 MEEGGGSSSKDKISNGSAXXXXXXXXXXXXXXXXXXSTS------------LQGLNEKSL 3637
            MEE G SS K+KISNGS                                  ++ L E  L
Sbjct: 1    MEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGESFL 60

Query: 3636 QAFCKKASTAFFEQYGLISHQINSYNDFIKYGIQKVFDSIEEILVEPGFDPSKRGDGDWR 3457
            + FCKKAST FFE+YG ISHQINSYNDFI YGIQ+VFDS+ EI VEPG+DPSKRGDGDW+
Sbjct: 61   KNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWK 120

Query: 3456 YASVKFLKVKLDKPNHWTGEKFSAENSKEYLDLLPRHARLQNMTYSARMIVETRLQVYTK 3277
            +ASVKF KV L++P  W GEKFS    KEYLDLLPRHARLQNMTYSAR++VET +QVYTK
Sbjct: 121  HASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTK 180

Query: 3276 RPIRSDKLKTGKDNLMIDKEIESDETREVFIGRIPVMVKSDLCWMNQLEKADCDFEHGGY 3097
            + +RSDK KTG D   +DKE E +  R+V IGRIPVMV S+LCWMN ++K DC+F+HGGY
Sbjct: 181  KLVRSDKFKTGVDRF-VDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGY 239

Query: 3096 FIVKGAEKTFIAQEHICLKRLWVDSTPNWMVSYRSVSRKKRVYIKLLETAKFEQISGGEK 2917
            FI KGAEKTFIAQE +CLKRLWV + P WMV YR   ++KRVYIKL ET K E I GGEK
Sbjct: 240  FIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEK 299

Query: 2916 YLSVYFFVLEMPIWILFFALGVTSDKEVINLIEADVNDSRIANILMSSIHEADDKCEDFR 2737
             LSVY    EMPIW+LFFALGV+SD+EV+NLI+ D+ D+ I NIL++SIHEAD  CEDFR
Sbjct: 300  ALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFR 358

Query: 2736 KGNNAISFIERHFKNCRFPPTETVEDCFFKYLFPSLPGFKQKARFLGYMVKCLLQGYTGH 2557
            KG  A+++++R  KNC+FPP E+VE+C   YLFP+L GFKQKARFLGYMVKCLL  + G 
Sbjct: 359  KGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGR 418

Query: 2556 RKVDNRDDFRNKXXXXXXXXXXXXXRVHIKHAEKRMVKSLQRDLYGIRTVQPIEHYLDAS 2377
            RKVDNRDDFRNK             R HIKHAE+RMVK++QRDLYG R VQPIEHYLDAS
Sbjct: 419  RKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDAS 478

Query: 2376 IVTNGLCRAFSTGAWCHPYKRMERISGIVATLRRTNPLQMTSDMRKTRQQVSYTGKVGDA 2197
            I+TNGL RAFSTG WCHPYKRMER+SG+VATLRRTNPLQMT+DMRK+RQQV+YTGKVGDA
Sbjct: 479  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDA 538

Query: 2196 RYPHPSHWGRICFLSTSDGENCGLVKNLASLGLVSTDMQEDIQDKLLECGMEKLINDSST 2017
            RYPHPSHWG++CFLST DGENCGLVKNLAS+GLVST + +   + L  CGM+KL++D ST
Sbjct: 539  RYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDCST 598

Query: 2016 VLHGKHKIFMDGDWVGICEDSASFVAELRHKRRSRKVPQQVEIKRDEQQREVRIFTDAGR 1837
             LHGK K+ +DG+WVG+CEDSA FV++LR KRR  +VP QVE+KRDE Q EVRIF+D GR
Sbjct: 599  SLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGR 658

Query: 1836 ILRPLLVVKNLGKVEAFKGGSFSFQSLLDRGVIELIGPEEEEDIKAAWGVKYLLGASEED 1657
            ILRPLLVV NL K++A KGG + FQSLLD G+IELIGPEEEED + AWGV+Y+L A +E+
Sbjct: 659  ILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKEN 718

Query: 1656 PPARYTHVELDMSFLLGLSCGLIPFANHDHAKRVLYQSEKHSQQAMGFGTTNPEIRVDTN 1477
            PPA+YTH ELDMSFLLGLSCG+IPFANHDHA+RVLYQSEKHSQQA+GF T NP  RVDTN
Sbjct: 719  PPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTN 778

Query: 1476 THQLFYPQRPLFRTMLSDCLGKSRA-----GVLPRPEYYNGQCAIVAVNVHLGYNQEDSI 1312
            THQL+YPQRPLFRTML+D LGK +      G+LPRPEY+NGQCAIVAVNVHLGYNQEDS+
Sbjct: 779  THQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSL 838

Query: 1311 VMNRASLERGMFRTEHIRSYKSEIENNEGAGKKLKPEDIVNFGKTQSKIGRVDSLDDDGF 1132
            VMNRASLERGMFR+EH+RSYK+E++N E   KKLK ED VNFGKTQSKIGRVDSLDDDGF
Sbjct: 839  VMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGF 898

Query: 1131 PFIGANLQSGDIVIGKYSESGVDHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQIRS 952
            PFIGANLQSGDI+IGK+SESG DHSVKLKHTERGMVQKV+LSAND+GKNFAVVSLRQ+RS
Sbjct: 899  PFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRS 958

Query: 951  PCLGDKFSSMHGQKGVLGFLESQENFPFTKQGVVPDIVINPHAFPSRQTPGQLLEAALGK 772
            PCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVINPHAFPSRQTPGQLLEAALGK
Sbjct: 959  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 1018

Query: 771  GIALGGSLKYATPFSTLTVEAITAQLHRLGFTRWGNEKVYNGRTGEMVESLVFMGPTFYQ 592
            GIALGG  KYATPFSTL+V+AI  QL   GFTRWGNE+VYNGRTGEMV SL+FMGPTFYQ
Sbjct: 1019 GIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQ 1078

Query: 591  RLTHMSEDKVKFRNTGPVHPFTRQPVADRKRFGGIKFGEMERDCL 457
            RL HM+EDKVKFRNTGPVHP TRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1079 RLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1123


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score = 1685 bits (4363), Expect = 0.0
 Identities = 812/1159 (70%), Positives = 954/1159 (82%)
 Frame = -1

Query: 3669 TSLQGLNEKSLQAFCKKASTAFFEQYGLISHQINSYNDFIKYGIQKVFDSIEEILVEPGF 3490
            T+L  L +++LQ+FCKKA++ FF++YGLISHQINSYN FI  G+Q+VFDS  E+ VEPG+
Sbjct: 13   TNLNELGKETLQSFCKKAASLFFDEYGLISHQINSYNSFINSGLQRVFDSFGEVAVEPGY 72

Query: 3489 DPSKRGDGDWRYASVKFLKVKLDKPNHWTGEKFSAENSKEYLDLLPRHARLQNMTYSARM 3310
            D SK+ DG+WR ASV+F KV LD+P+ W G    AE++     + PRHARLQNMTYSARM
Sbjct: 73   DSSKQKDGEWRRASVRFGKVTLDRPSFWGGTSSDAEHN-----MFPRHARLQNMTYSARM 127

Query: 3309 IVETRLQVYTKRPIRSDKLKTGKDNLMIDKEIESDETREVFIGRIPVMVKSDLCWMNQLE 3130
             +   +QVYT+   RSDK KTG D + + K +   E RE+ IGRIPVMVKSDLCW+  +E
Sbjct: 128  KIHVNVQVYTQTVGRSDKFKTGIDKV-VQKNVVHTENREIIIGRIPVMVKSDLCWLTTVE 186

Query: 3129 KADCDFEHGGYFIVKGAEKTFIAQEHICLKRLWVDSTPNWMVSYRSVSRKKRVYIKLLET 2950
            K DCDF+HGGYF++KGAEK FIAQE IC+KRLW+ ++  W VSY+S  ++ R+ ++L+E 
Sbjct: 187  KGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVEL 246

Query: 2949 AKFEQISGGEKYLSVYFFVLEMPIWILFFALGVTSDKEVINLIEADVNDSRIANILMSSI 2770
            +K E I G +K L VYF   E+P+WILFFALGV SDKEVI+LI+   ND+ I NI  +SI
Sbjct: 247  SKLEYIKGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASI 306

Query: 2769 HEADDKCEDFRKGNNAISFIERHFKNCRFPPTETVEDCFFKYLFPSLPGFKQKARFLGYM 2590
            H+AD+KCE FR+ + A+ ++++  K  RFPP E++ED    YLFP L   + KARFLGYM
Sbjct: 307  HDADEKCEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYM 366

Query: 2589 VKCLLQGYTGHRKVDNRDDFRNKXXXXXXXXXXXXXRVHIKHAEKRMVKSLQRDLYGIRT 2410
            VKCLL+ YTGHRK DNRD FRNK             +VH+ HA +RM K+LQRDLYG R 
Sbjct: 367  VKCLLEAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRD 426

Query: 2409 VQPIEHYLDASIVTNGLCRAFSTGAWCHPYKRMERISGIVATLRRTNPLQMTSDMRKTRQ 2230
            V PIEHYLDASIVTNGL RAFSTGAWCHP+K MER+SG+V  L R NPLQ   D+RKTRQ
Sbjct: 427  VHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQ 486

Query: 2229 QVSYTGKVGDARYPHPSHWGRICFLSTSDGENCGLVKNLASLGLVSTDMQEDIQDKLLEC 2050
            QV YTGKVGDARYPHPSHWGR+CFLST DGENCGLVKNLA  G+VST++ E + DKL + 
Sbjct: 487  QVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDS 546

Query: 2049 GMEKLINDSSTVLHGKHKIFMDGDWVGICEDSASFVAELRHKRRSRKVPQQVEIKRDEQQ 1870
            GMEKL++D+ T L GKHK+F++G+WVG+CEDS  FV ELR  RR R++P QVEIKRDEQQ
Sbjct: 547  GMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQ 606

Query: 1869 REVRIFTDAGRILRPLLVVKNLGKVEAFKGGSFSFQSLLDRGVIELIGPEEEEDIKAAWG 1690
            REVRIF+DAGRILRPLLVV+NL K++AFKGG++ F SLLD+G+IE IG EEEED   AWG
Sbjct: 607  REVRIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWG 666

Query: 1689 VKYLLGASEEDPPARYTHVELDMSFLLGLSCGLIPFANHDHAKRVLYQSEKHSQQAMGFG 1510
            +K+LL   E   P +Y+H ELDMSFLLGLSCG+IPFANHDHA+RVLYQ++KHSQQA+GF 
Sbjct: 667  IKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFS 726

Query: 1509 TTNPEIRVDTNTHQLFYPQRPLFRTMLSDCLGKSRAGVLPRPEYYNGQCAIVAVNVHLGY 1330
            TTNP IRVDT +HQL YPQRPLFRTM+SDCL      VLP+PE +NGQ AIVAVNVHLGY
Sbjct: 727  TTNPNIRVDTLSHQLHYPQRPLFRTMISDCL------VLPKPELFNGQNAIVAVNVHLGY 780

Query: 1329 NQEDSIVMNRASLERGMFRTEHIRSYKSEIENNEGAGKKLKPEDIVNFGKTQSKIGRVDS 1150
            NQEDS+VMNRASLERGMFR+EHIRSYK+E++N E   K+ K ED + FGK QSKIGRVDS
Sbjct: 781  NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDS 840

Query: 1149 LDDDGFPFIGANLQSGDIVIGKYSESGVDHSVKLKHTERGMVQKVVLSANDDGKNFAVVS 970
            LDDDGFPFIGAN+QSGDIVIGK +ESG DHSVKLKHTERGMVQKVVLS+ND+GKNFAVVS
Sbjct: 841  LDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVS 900

Query: 969  LRQIRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGVVPDIVINPHAFPSRQTPGQLL 790
            LRQ+RSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGVVPDIVINPHAFPSRQTPGQLL
Sbjct: 901  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLL 960

Query: 789  EAALGKGIALGGSLKYATPFSTLTVEAITAQLHRLGFTRWGNEKVYNGRTGEMVESLVFM 610
            EAALGKGIA GGS +YATPFSTL+V+ I  QLHR  F+RWGNE+VYNGRTGEMV SL+FM
Sbjct: 961  EAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSLIFM 1020

Query: 609  GPTFYQRLTHMSEDKVKFRNTGPVHPFTRQPVADRKRFGGIKFGEMERDCLIAHGAASNL 430
            GPTFYQRL HM+EDKVKFRNTGPVHP TRQPVADRKRFGGIKFGEMERDCLIAHGA++NL
Sbjct: 1021 GPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL 1080

Query: 429  HERLFTLSDCSQMHICRKCKTMANVIQRPVLGGHKVRGPYCRFCESMEHIVRANVPYGAK 250
            HERLFTLSD S+MHIC+KCK +ANVIQR V GG K+RGPYCR CES++ +V+ +VPYGAK
Sbjct: 1081 HERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPYGAK 1140

Query: 249  LLYQELFSMGITLKFDAEI 193
            LL QELFSMGI+LKFD  +
Sbjct: 1141 LLCQELFSMGISLKFDTRV 1159


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1682 bits (4357), Expect = 0.0
 Identities = 816/1165 (70%), Positives = 955/1165 (81%), Gaps = 5/1165 (0%)
 Frame = -1

Query: 3669 TSLQGLNEKSLQAFCKKASTAFFEQYGLISHQINSYNDFIKYGIQKVFDSIEEILVEPGF 3490
            TSL  + E  L+ FC KA+T FF +YGLISHQINSYNDFI  GIQK FDS  E++VEPG+
Sbjct: 49   TSLTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGY 108

Query: 3489 DPSKRGDGDWRYASVKFLKVKLDKPNHWTGEKFSAENSKEYLDLLPRHARLQNMTYSARM 3310
            DPSK+G+ +WRYASVKF KV L+KP  W+G    A+  K    +LPRHARLQNMTYS++M
Sbjct: 109  DPSKKGENEWRYASVKFGKVALEKPTFWSG----ADEHK----MLPRHARLQNMTYSSKM 160

Query: 3309 IVETRLQVYTKRPIRSDKLKTGKDNLMIDKEIESDETREVFIGRIPVMVKSDLCWMNQLE 3130
             V   ++VYT++ +RSDK KTGKD   +DKE+ + + R + IG +PVMVKSDLCWM   E
Sbjct: 161  KVNVSVEVYTRKVVRSDKFKTGKDQY-VDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAE 219

Query: 3129 KADCDFEHGGYFIVKGAEKTFIAQEHICLKRLWVDSTPNWMVSYRSVSRKKRVYIKLLET 2950
            K DCDF+HGGYF++KGAEK FIAQE ICLKRLW+ +   W VSY+S  ++ R+ ++L+  
Sbjct: 220  KGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGL 279

Query: 2949 AKFEQISGGEKYLSVYFFVLEMPIWILFFALGVTSDKEVINLIEADVNDSRIANILMSSI 2770
            +  E +   +K L+VYF   E+P+WILFFALGVTSDKEVI+LI    ND+RI NI  +SI
Sbjct: 280  SALEDVKAEKKCLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASI 339

Query: 2769 HEADDKCEDFRKGNNAISFIERHFKNCRFPPTETVEDCFFKYLFPSLPGFKQKARFLGYM 2590
            H+AD+K E FR+G  A+ ++ R  +  RFPP E  ED F  YLFP+L   +QKARFLGYM
Sbjct: 340  HDADEKTEGFRRGKEALEYVVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYM 398

Query: 2589 VKCLLQGYTGHRKVDNRDDFRNKXXXXXXXXXXXXXRVHIKHAEKRMVKSLQRDLYGIRT 2410
            VKCLLQ Y G RK +N D FRNK             +VHI HA +RM K+LQ+DLYG R 
Sbjct: 399  VKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRD 458

Query: 2409 VQPIEHYLDASIVTNGLCRAFSTGAWCHPYKRMERISGIVATLRRTNPLQMTSDMRKTRQ 2230
            V+PIEHYLDASIVTNGL RAFSTGAW HPYKRMERISG+VA L R NPLQ   D+RKTR 
Sbjct: 459  VRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRY 518

Query: 2229 QVSYTGKVGDARYPHPSHWGRICFLSTSDGENCGLVKNLASLGLVSTDMQEDIQDKLLEC 2050
             V YTGKVGDAR+PHPSHWGR+CFLST DGENCGLVKNLA+ GLVS ++ E + DKL+  
Sbjct: 519  HVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIAR 578

Query: 2049 GMEKLINDSSTVLHGKHKIFMDGDWVGICEDSASFVAELRHKRRSRKVPQQVEIKRDEQQ 1870
            GMEK+  DS + L  K K+F++G+WVG+CEDS  FVAELR  RR +K+PQQVEIKRDEQQ
Sbjct: 579  GMEKVPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQ 638

Query: 1869 REVRIFTDAGRILRPLLVVKNLGKVEAFKGGSFSFQSLLDRGVIELIGPEEEEDIKAAWG 1690
            +EVRIF+DAGRILRPLLVV+NL K+EAFKGG+ +FQSLLD+G+IE +G EEEED   AWG
Sbjct: 639  QEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWG 698

Query: 1689 VKYLLGASEEDPPARYTHVELDMSFLLGLSCGLIPFANHDHAKRVLYQSEKHSQQAMGFG 1510
            +K+LL   +     +YTH ELDMSFLLGLSCG+IPFANHDHA+RVLYQ++KHSQQA+GF 
Sbjct: 699  IKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFP 758

Query: 1509 TTNPEIRVDTNTHQLFYPQRPLFRTMLSDCLGK-----SRAGVLPRPEYYNGQCAIVAVN 1345
            TTNP IRVDT +HQL+YPQRPLFRT+ SDCLGK        G++P+PE YNGQ AIVAVN
Sbjct: 759  TTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVN 818

Query: 1344 VHLGYNQEDSIVMNRASLERGMFRTEHIRSYKSEIENNEGAGKKLKPEDIVNFGKTQSKI 1165
            VHLGYNQEDS+VMNRASLERGMFR+EHIRSYK++++N E   K+ K +D VNFGK  SKI
Sbjct: 819  VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKI 878

Query: 1164 GRVDSLDDDGFPFIGANLQSGDIVIGKYSESGVDHSVKLKHTERGMVQKVVLSANDDGKN 985
            GRVDSLDDDGFPFIGANLQSGDIVIG+ +ESG DHS+KLKHTERGMVQKVVLS+ND+GKN
Sbjct: 879  GRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKN 938

Query: 984  FAVVSLRQIRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGVVPDIVINPHAFPSRQT 805
            FAVVSLRQ+RSPCLGDKFSSMHGQKGVLGFLESQENFPFT+QG+VPDIVINPH+FPSRQT
Sbjct: 939  FAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQT 998

Query: 804  PGQLLEAALGKGIALGGSLKYATPFSTLTVEAITAQLHRLGFTRWGNEKVYNGRTGEMVE 625
            PGQLLEAALGKGIA GGS+KYATPFSTL+VEAIT QLHR GF+RWGNE+VYNGRTGEMV 
Sbjct: 999  PGQLLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVR 1058

Query: 624  SLVFMGPTFYQRLTHMSEDKVKFRNTGPVHPFTRQPVADRKRFGGIKFGEMERDCLIAHG 445
            SL+FMGPTFYQRL HM+EDKVKFRNTGPVHP TRQPVADRKRFGGIKFGEMERDCLIAHG
Sbjct: 1059 SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1118

Query: 444  AASNLHERLFTLSDCSQMHICRKCKTMANVIQRPVLGGHKVRGPYCRFCESMEHIVRANV 265
            A++NLHERLFTLSD SQMHIC+KCK +ANVIQR V GG K+RGPYCR CES++ IV+ NV
Sbjct: 1119 ASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNV 1178

Query: 264  PYGAKLLYQELFSMGITLKFDAEIC 190
            PYGAKLL QELFSMGI+LKF+  +C
Sbjct: 1179 PYGAKLLCQELFSMGISLKFETRLC 1203