BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00008332
         (1469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...   461   e-127
ref|XP_003556222.1| PREDICTED: RNA pseudourine synthase 5-like [...   455   e-125
ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [...   451   e-124
ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [...   451   e-124
emb|CBI31488.3| unnamed protein product [Vitis vinifera]              451   e-124

>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
            gi|358349060|ref|XP_003638558.1| RNA pseudourine synthase
            [Medicago truncatula] gi|355481000|gb|AES62203.1| RNA
            pseudourine synthase [Medicago truncatula]
            gi|355504493|gb|AES85696.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 371

 Score =  461 bits (1186), Expect(2) = e-127
 Identities = 228/345 (66%), Positives = 268/345 (77%), Gaps = 2/345 (0%)
 Frame = +3

Query: 87   SKPTFGEVWPELNDGLNYSDLIHPSDAGSSVIDFYSNKYKSSAPLQGWLQRIYNKQITID 266
            S    G  WPE NDGL+Y D++ PSDAG ++I+FYS KYKSSAPLQGWLQRI + QIT+D
Sbjct: 3    SPKKIGIPWPEFNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLD 62

Query: 267  GRVVGDPETILRAGEKLVYQRLPWKEPDAPXXXXXXXXXXXXXXXXKPSGLQVLPGGLFQ 446
             RVV DP TILR G KLVY R+PWKEPDAP                KPSGLQVLPGGLFQ
Sbjct: 63   ARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQ 122

Query: 447  QRTVLTQLQWR-RKRTFPSSRQELNPVPVHRLGRGTSGILLCAKTKLSKSRLASYFADGT 623
            QRTVLTQLQW    ++   + Q+ +PVPVHRLGRGTSGILLCAKTKL+++RLASYFADGT
Sbjct: 123  QRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGT 182

Query: 624  SAVGKKISTNADVNSPRKISKVYRALASGVIQEDEVVIEQPIGLVKYPGVATGLYVASSS 803
            S +  K  TN ++    KI+K+YRAL SG+I  D+V I QPIG+VKYPGVA GLYVAS S
Sbjct: 183  SRIEGKGHTNQELG---KIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQS 239

Query: 804  GKPAVSIVHVLQRDVKTNCTIVQ-VEIQSGRPHQIRIHLSYIGHPLIGDPLYIAGGQPQS 980
            GKPA+S+VHVL+R+VK N T+VQ V+IQSGRPHQIRIHLS+IGHPL+GDPLY  GGQP+ 
Sbjct: 240  GKPALSVVHVLERNVKENSTLVQVVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKC 299

Query: 981  FIHNGIGEKFAEDGGYTRPENPVPGDCGYYLHAHKLVLTHPTTSE 1115
               + + E FAEDGGYTRP  PVPGDCGY+LHAH+L L+HP T+E
Sbjct: 300  LDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNE 344



 Score = 23.5 bits (49), Expect(2) = e-127
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 1135 IITITAPLPPMLQTSED 1185
            II + APLP +LQT E+
Sbjct: 345  IIEMIAPLPSILQTHEE 361


>ref|XP_003556222.1| PREDICTED: RNA pseudourine synthase 5-like [Glycine max]
          Length = 371

 Score =  455 bits (1170), Expect = e-125
 Identities = 221/344 (64%), Positives = 266/344 (77%), Gaps = 1/344 (0%)
 Frame = +3

Query: 87   SKPTFGEVWPELNDGLNYSDLIHPSDAGSSVIDFYSNKYKSSAPLQGWLQRIYNKQITID 266
            S+  FG  WPE NDGL+Y D++  SDAG+++I+FYS KYKSSAPLQGWLQRI + QIT+D
Sbjct: 3    SRKKFGIPWPECNDGLSYDDVVRASDAGATLIEFYSTKYKSSAPLQGWLQRIKSGQITVD 62

Query: 267  GRVVGDPETILRAGEKLVYQRLPWKEPDAPXXXXXXXXXXXXXXXXKPSGLQVLPGGLFQ 446
            G VV D  T+LR G KL+Y RLPWKEPDAP                KPSGLQVLPGGL+Q
Sbjct: 63   GGVVTDSNTVLRVGSKLIYHRLPWKEPDAPHMIDVLYEDDDMIALNKPSGLQVLPGGLYQ 122

Query: 447  QRTVLTQLQWRRKRTFPSS-RQELNPVPVHRLGRGTSGILLCAKTKLSKSRLASYFADGT 623
            QRT+LTQLQW           + L+PVPVHRLGRGTSGILLCAKTKL+++RLAS+FADGT
Sbjct: 123  QRTILTQLQWEANNQGTCEMHKRLHPVPVHRLGRGTSGILLCAKTKLARARLASHFADGT 182

Query: 624  SAVGKKISTNADVNSPRKISKVYRALASGVIQEDEVVIEQPIGLVKYPGVATGLYVASSS 803
            S VG K  T  ++    KI+K+YRAL SG+++ D+V I QPIG+VKYPGVA GLYVAS S
Sbjct: 183  SHVGGKRDTKQELG---KIAKMYRALVSGIVENDKVTINQPIGIVKYPGVAKGLYVASES 239

Query: 804  GKPAVSIVHVLQRDVKTNCTIVQVEIQSGRPHQIRIHLSYIGHPLIGDPLYIAGGQPQSF 983
            GKPA+S+V +L+ +++ N T+VQV+IQSGRPHQIRIHLS+IGHPL+GDPLY  GGQP+  
Sbjct: 240  GKPALSVVDILETNIQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYGVGGQPKCL 299

Query: 984  IHNGIGEKFAEDGGYTRPENPVPGDCGYYLHAHKLVLTHPTTSE 1115
              + + E FAEDGGY RP  PVPGDCGYYLHAHKLVL+HPTT+E
Sbjct: 300  DCDFVDESFAEDGGYQRPTKPVPGDCGYYLHAHKLVLSHPTTNE 343


>ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  451 bits (1161), Expect(2) = e-124
 Identities = 217/338 (64%), Positives = 264/338 (78%)
 Frame = +3

Query: 102  GEVWPELNDGLNYSDLIHPSDAGSSVIDFYSNKYKSSAPLQGWLQRIYNKQITIDGRVVG 281
            G  WP+LNDGL Y+D++ P D+G S+I FYS KYKSSAPL+GWLQRI N+QITIDG V+ 
Sbjct: 11   GIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVIT 70

Query: 282  DPETILRAGEKLVYQRLPWKEPDAPXXXXXXXXXXXXXXXXKPSGLQVLPGGLFQQRTVL 461
            DPETILR G  LVY+RLPWKEPD P                KPSGLQVLPGG+FQQRTVL
Sbjct: 71   DPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTVL 130

Query: 462  TQLQWRRKRTFPSSRQELNPVPVHRLGRGTSGILLCAKTKLSKSRLASYFADGTSAVGKK 641
            TQLQW   +   S  +EL+PVPVHRLGRGTSGILLCAKTKL++++ A+YFA+GTS+V + 
Sbjct: 131  TQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGTSSVRRN 190

Query: 642  ISTNADVNSPRKISKVYRALASGVIQEDEVVIEQPIGLVKYPGVATGLYVASSSGKPAVS 821
             ++  +  + RKISK+YRAL +G+I +DEV ++QPIG ++YPGVA GLYVA+ SGKPA S
Sbjct: 191  RNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSGKPACS 250

Query: 822  IVHVLQRDVKTNCTIVQVEIQSGRPHQIRIHLSYIGHPLIGDPLYIAGGQPQSFIHNGIG 1001
             V+VL+RD ++  T+VQVEIQSGRPHQIRIHLS IGHPL+GDPLY+AGGQP       + 
Sbjct: 251  KVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLVGDPLYVAGGQPNCLHSEVVN 310

Query: 1002 EKFAEDGGYTRPENPVPGDCGYYLHAHKLVLTHPTTSE 1115
            + FAEDGGY RP  PVPGDCGYYLHAH+L+L HP T+E
Sbjct: 311  QSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNE 348



 Score = 23.1 bits (48), Expect(2) = e-124
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 1135 IITITAPLPPMLQT 1176
            ++ I APLPP+L+T
Sbjct: 349  VVKIIAPLPPILRT 362


>ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  451 bits (1160), Expect(2) = e-124
 Identities = 217/338 (64%), Positives = 264/338 (78%)
 Frame = +3

Query: 102  GEVWPELNDGLNYSDLIHPSDAGSSVIDFYSNKYKSSAPLQGWLQRIYNKQITIDGRVVG 281
            G  WP+LNDGL Y+D++ P D+G S+I FYS KYKSSAPL+GWLQRI N+QITIDG V+ 
Sbjct: 11   GIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVIT 70

Query: 282  DPETILRAGEKLVYQRLPWKEPDAPXXXXXXXXXXXXXXXXKPSGLQVLPGGLFQQRTVL 461
            DPETILR G  LVY+RLPWKEPD P                KPSGLQVLPGG+FQQRTVL
Sbjct: 71   DPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTVL 130

Query: 462  TQLQWRRKRTFPSSRQELNPVPVHRLGRGTSGILLCAKTKLSKSRLASYFADGTSAVGKK 641
            TQLQW   +   S  +EL+PVPVHRLGRGTSGILLCAKTKL++++ A+YFA+GTS+V + 
Sbjct: 131  TQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGTSSVRRN 190

Query: 642  ISTNADVNSPRKISKVYRALASGVIQEDEVVIEQPIGLVKYPGVATGLYVASSSGKPAVS 821
             ++  +  + RKISK+YRAL +G+I +DEV ++QPIG ++YPGVA GLYVA+ SGKPA S
Sbjct: 191  RNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSGKPACS 250

Query: 822  IVHVLQRDVKTNCTIVQVEIQSGRPHQIRIHLSYIGHPLIGDPLYIAGGQPQSFIHNGIG 1001
             V+VL+RD ++  T+VQVEIQSGRPHQIRIHLS IGHPL+GDPLY+AGGQP       + 
Sbjct: 251  KVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPNCLHSEVVN 310

Query: 1002 EKFAEDGGYTRPENPVPGDCGYYLHAHKLVLTHPTTSE 1115
            + FAEDGGY RP  PVPGDCGYYLHAH+L+L HP T+E
Sbjct: 311  QSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNE 348



 Score = 23.1 bits (48), Expect(2) = e-124
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 1135 IITITAPLPPMLQT 1176
            ++ I APLPP+L+T
Sbjct: 349  VVKIIAPLPPILRT 362


>emb|CBI31488.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  451 bits (1160), Expect = e-124
 Identities = 222/342 (64%), Positives = 269/342 (78%), Gaps = 2/342 (0%)
 Frame = +3

Query: 96   TFGEVWPELNDGLNYSDLIHPSDAGSSVIDFYSNKYKSSAPLQGWLQRIYNKQITIDGRV 275
            TFG  WP+ NDGL Y+D++  SD+  ++ID+YS+K+K+SAPLQGWLQRI   QIT+DG V
Sbjct: 4    TFGVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGTV 63

Query: 276  VGDPETILRAGEKLVYQRLPWKEPDAPXXXXXXXXXXXXXXXXKPSGLQVLPGGLFQQRT 455
            V +P+TILRAG KLVY RLPW+EPDAP                KPSGLQVLPGGLFQQRT
Sbjct: 64   VTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSGLQVLPGGLFQQRT 123

Query: 456  VLTQLQWR--RKRTFPSSRQELNPVPVHRLGRGTSGILLCAKTKLSKSRLASYFADGTSA 629
            VLTQLQWR  ++ + P+  QE + VPVHRLGRGTSGILLCAKTKL+K+RLA+YFADGTS 
Sbjct: 124  VLTQLQWRANKQNSLPAC-QESHSVPVHRLGRGTSGILLCAKTKLAKTRLAAYFADGTSV 182

Query: 630  VGKKISTNADVNSPRKISKVYRALASGVIQEDEVVIEQPIGLVKYPGVATGLYVASSSGK 809
            VG     +    + RKISK+YRAL +G++ +DE+VIEQPIG+V+YPGVA GLYVAS SGK
Sbjct: 183  VGGNRDADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYPGVAKGLYVASPSGK 242

Query: 810  PAVSIVHVLQRDVKTNCTIVQVEIQSGRPHQIRIHLSYIGHPLIGDPLYIAGGQPQSFIH 989
            PA+S V +L+RDV+ +  IVQVEIQSGRPHQIRIHLS+IGHPL+GDPLY+ GGQP+    
Sbjct: 243  PALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVPGGQPKCCDA 302

Query: 990  NGIGEKFAEDGGYTRPENPVPGDCGYYLHAHKLVLTHPTTSE 1115
                E +A DGGY RP  PVPGDCGY+LHAH+LVL+HPTT+E
Sbjct: 303  EFTNESYALDGGYQRPVKPVPGDCGYHLHAHQLVLSHPTTNE 344