BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00008158
         (1315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   396   e-108
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   384   e-104
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   379   e-103
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   378   e-102
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   368   2e-99

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  396 bits (1018), Expect = e-108
 Identities = 203/297 (68%), Positives = 226/297 (76%), Gaps = 10/297 (3%)
 Frame = -3

Query: 1274 MTSVSSKLPTDDVSLLVVIIDTNPLFWTTLNSNFGFSEFLSHXXXXXXXXXXXXXXXXXX 1095
            M  V SKL +DDVSLLVV++DTNP FW+T  ++  FS+FLSH                  
Sbjct: 1    MAPVPSKLYSDDVSLLVVLLDTNPFFWST--ASLPFSKFLSHVLAFLNSILLINQLNQVV 58

Query: 1094 XIATGISWCDYVYDSSTCVSKR----------AETLLDKLEEFVEKDESLSTEDSADGVA 945
             IATG + C++++DSS+  +               LL KLEEFV  DE LS E  A G+ 
Sbjct: 59   VIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIG 118

Query: 944  PSLLSGSLSMALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVSVMNAIFSAQRSMVPI 765
             SLLSGSLSMALCYIQRVFR+G LHPQPRILCL GSPDGP QYV+VMNAIFSAQRSMVPI
Sbjct: 119  SSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPI 178

Query: 764  DSCVIGAQHSAFLQQASYITGGVYMKPEHFDGLFQYLSTVFATDLHSRSFLQLPKPVGVD 585
            DSCVIGAQHSAFLQQASYITGGVY+KP+  DGLFQYLSTVFATDLHSR FLQLPKP GVD
Sbjct: 179  DSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVD 238

Query: 584  FRASCFCHKNTINTGYICSVCLSIFCKHQKKCSTCGSIFGQAQLQDSSTPDKKRKTP 414
            FRASCFCHKNTI+ GYICSVCLSIFCKH KKCSTCGS+FGQAQ   +S  D+KRKTP
Sbjct: 239  FRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRKTP 295


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
            predicted protein [Populus trichocarpa]
          Length = 289

 Score =  384 bits (986), Expect = e-104
 Identities = 194/287 (67%), Positives = 216/287 (75%), Gaps = 10/287 (3%)
 Frame = -3

Query: 1244 DDVSLLVVIIDTNPLFWTTLNSNFGFSEFLSHXXXXXXXXXXXXXXXXXXXIATGISWCD 1065
            DDVSL+VV++DTNP FWT   S+  FS+FLSH                   IA+G + CD
Sbjct: 2    DDVSLVVVLLDTNPFFWTP-PSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCD 60

Query: 1064 YVYDSSTCVSKRAE----------TLLDKLEEFVEKDESLSTEDSADGVAPSLLSGSLSM 915
            Y+YDSS+  S+              LL KLEEF+ KDE L  E S   +  SLLSGSLSM
Sbjct: 61   YIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSM 120

Query: 914  ALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVSVMNAIFSAQRSMVPIDSCVIGAQHS 735
            ALCYIQRVFRSG LHPQPRILCL GSPDGP QYV+VMNAIFSAQRSMVPIDSC +GA +S
Sbjct: 121  ALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNS 180

Query: 734  AFLQQASYITGGVYMKPEHFDGLFQYLSTVFATDLHSRSFLQLPKPVGVDFRASCFCHKN 555
            AFLQQASYITGGVY+KP+H DGLFQYL+TVFATDLHSRSF+QLP+P GVDFRASCFCHK 
Sbjct: 181  AFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKT 240

Query: 554  TINTGYICSVCLSIFCKHQKKCSTCGSIFGQAQLQDSSTPDKKRKTP 414
            TI+ GYICSVCLSIFC H KKCSTCGS+FGQAQ   SST D KRK P
Sbjct: 241  TIDMGYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRKAP 287


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
            lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
            ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  379 bits (973), Expect = e-103
 Identities = 199/302 (65%), Positives = 228/302 (75%), Gaps = 14/302 (4%)
 Frame = -3

Query: 1274 MTSVSSKLPTDDVSLLVVIIDTNPLFWTTLNSNFGFSEFLSHXXXXXXXXXXXXXXXXXX 1095
            M SV SK  +DDVSLLV+++DTNPLFW+T  ++  FS+FLSH                  
Sbjct: 1    MPSVVSKQYSDDVSLLVLLLDTNPLFWST--TSITFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 1094 XIATGISWCDYVYDSS------------TCVSKRAETLLDKLEEFVEKDESLSTEDSADG 951
             IATG S CDY+YDSS            T +     +LL KLE+FV KDE LS E+ ++ 
Sbjct: 59   VIATGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSED 118

Query: 950  VAPS-LLSGSLSMALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVSVMNAIFSAQRSM 774
              PS LLSGSLSMALCYIQRVFRSG LHPQPRILCL GSPDGP QYV+VMN+IFSAQR M
Sbjct: 119  RIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLM 178

Query: 773  VPIDSCVIGAQHSAFLQQASYITGGVYMKPEHFDGLFQYLSTVFATDLHSRSFLQLPKPV 594
            VPIDSC IG Q+SAFLQQASYITGGV+  P+  DGLFQYL+T+FATDLHSRSF+QLPKP+
Sbjct: 179  VPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPI 238

Query: 593  GVDFRASCFCHKNTINTGYICSVCLSIFCKHQKKCSTCGSIFGQAQLQD-SSTPDKKRKT 417
            GVDFRASCFCHK TI+ GYICSVCLSIFC+H KKCSTCGS+FGQ++L D SS  DKKRK 
Sbjct: 239  GVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRKA 298

Query: 416  PS 411
            PS
Sbjct: 299  PS 300


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
            thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis
            thaliana] gi|92856638|gb|ABE77412.1| At1g18340
            [Arabidopsis thaliana] gi|332191584|gb|AEE29705.1|
            transcription initiation factor TFIIH subunit H3
            [Arabidopsis thaliana]
          Length = 301

 Score =  378 bits (970), Expect = e-102
 Identities = 197/302 (65%), Positives = 228/302 (75%), Gaps = 14/302 (4%)
 Frame = -3

Query: 1274 MTSVSSKLPTDDVSLLVVIIDTNPLFWTTLNSNFGFSEFLSHXXXXXXXXXXXXXXXXXX 1095
            M +++SK  +DDVSLLV+++DTNPLFW+T  ++  FS+FLSH                  
Sbjct: 1    MPAIASKQYSDDVSLLVLLLDTNPLFWST--TSITFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 1094 XIATGISWCDYVYDSS------------TCVSKRAETLLDKLEEFVEKDESLSTEDSADG 951
             IATG S CDY+YDSS            T +     +LL KLEEFV KDE LS E+ ++ 
Sbjct: 59   VIATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSED 118

Query: 950  VAPS-LLSGSLSMALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVSVMNAIFSAQRSM 774
              PS LLSGSLSMALCYIQRVFRSG LHPQPRILCL GSPDGP QYV+VMN+IFSAQR M
Sbjct: 119  RIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLM 178

Query: 773  VPIDSCVIGAQHSAFLQQASYITGGVYMKPEHFDGLFQYLSTVFATDLHSRSFLQLPKPV 594
            VPIDSC IG Q+SAFLQQASYITGGV+  P+  DGLFQYL+T+FATDLHSR F+QLPKP+
Sbjct: 179  VPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPI 238

Query: 593  GVDFRASCFCHKNTINTGYICSVCLSIFCKHQKKCSTCGSIFGQAQLQD-SSTPDKKRKT 417
            GVDFRASCFCHK TI+ GYICSVCLSIFC+H KKCSTCGS+FGQ++L D SS  DKKRK 
Sbjct: 239  GVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKA 298

Query: 416  PS 411
            PS
Sbjct: 299  PS 300


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  368 bits (945), Expect = 2e-99
 Identities = 191/296 (64%), Positives = 214/296 (72%), Gaps = 9/296 (3%)
 Frame = -3

Query: 1274 MTSVSSKLPTDDVSLLVVIIDTNPLFWTTLNSNFGFSEFLSHXXXXXXXXXXXXXXXXXX 1095
            M S  SKL  DDVSLLVV++DTNP FW+T  S   FS+FLSH                  
Sbjct: 1    MASAPSKLYADDVSLLVVLLDTNPFFWST--SALPFSKFLSHVLAFLNSILVLNQLNEVV 58

Query: 1094 XIATGISWCDYVYDSSTCVSKRAET---------LLDKLEEFVEKDESLSTEDSADGVAP 942
             I TG + C Y+Y+SS+  +   E          LL  LEEFV  DE    ED   G   
Sbjct: 59   VIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMS 118

Query: 941  SLLSGSLSMALCYIQRVFRSGSLHPQPRILCLHGSPDGPGQYVSVMNAIFSAQRSMVPID 762
            SLLSGSLSMALCYIQ+VFRSGSLHPQPRILCL GSPDGP QYV++MNAIFSAQRSMVPID
Sbjct: 119  SLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178

Query: 761  SCVIGAQHSAFLQQASYITGGVYMKPEHFDGLFQYLSTVFATDLHSRSFLQLPKPVGVDF 582
            SC IG+ +SAFLQQASYITGGVY+KP+  DGLFQYLSTVF TDLHSR+FLQLPK VGVDF
Sbjct: 179  SCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDF 238

Query: 581  RASCFCHKNTINTGYICSVCLSIFCKHQKKCSTCGSIFGQAQLQDSSTPDKKRKTP 414
            RASCFCHK TI+ GY+CSVCLSIFCKH KKCSTCGS+FG+  ++  S    KRKTP
Sbjct: 239  RASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTP 294